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- | <html> | + | <html></div></div></div></div></div></div></div></div></div></div></div></div> |
| <link rel="stylesheet" href="https://2012.igem.org/Team:Johns_Hopkins-Software/Templates/cssindex?action=raw&ctype=text/css" type="text/css"/> | | <link rel="stylesheet" href="https://2012.igem.org/Team:Johns_Hopkins-Software/Templates/cssindex?action=raw&ctype=text/css" type="text/css"/> |
- | <div id="header_body">
| |
- | <div id="header_new">
| |
- | <div id="header_title">
| |
- | <a href="https://2012.igem.org/Team:Johns_Hopkins-Software"><img src="https://static.igem.org/mediawiki/2012/0/09/AutogeneHeader.png" width="74.1%" alt="Autogene" style="border:none; -moz-box-shadow: 0px 0px 0px #fff;
| |
- | -webkit-box-shadow: 0px 0px 0px #Fff;
| |
- | box-shadow: 0px 0px 0px #fff;
| |
- | /* For IE 8 */
| |
- | -ms-filter: "progid:DXImageTransform.Microsoft.Shadow(Strength=0, Direction=135, Color='#ffffff')";
| |
- | /* For IE 5.5 - 7 */
| |
- | filter: progid:DXImageTransform.Microsoft.Shadow(Strength=0, Direction=135, Color='#ffffff');"></a><a href="https://2012.igem.org/Main_Page"><img src="https://static.igem.org/mediawiki/2012/2/2e/Return1.png" width="25.9%" style="border:none; -moz-box-shadow: 0px 0px 0px #fff;
| |
- | -webkit-box-shadow: 0px 0px 0px #Fff;
| |
- | box-shadow: 0px 0px 0px #fff;
| |
- | /* For IE 8 */
| |
- | -ms-filter: "progid:DXImageTransform.Microsoft.Shadow(Strength=0, Direction=135, Color='#ffffff')";
| |
- | /* For IE 5.5 - 7 */
| |
- | filter: progid:DXImageTransform.Microsoft.Shadow(Strength=0, Direction=135, Color='#ffffff');"></a>
| |
- | </div>
| |
- | </div>
| |
- | <div id = "navigation_wrapper">
| |
- | <div id="navigation_low">
| |
- | <div id="mydroplinemenu" class="droplinebar">
| |
- | <ul>
| |
- | <li><a href="#">Team</a>
| |
- | <ul>
| |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Team">Members</a></li>
| |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Attributions">Attributions</a></li>
| |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Sponsors">Sponsors</a></li>
| |
- | </ul>
| |
- | </li>
| |
| | | |
- | <li><a href="#">Software</a>
| + | <div id="project_temp"> |
- | <ul>
| + | <div id="title"> |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/theSoftware_overview">Overview</a></li>
| + | Biobrick Annotations |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/AutoPlasmid">AutoPlasmid</a></li>
| + | </div> |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/AutoDesign">AutoDesign</a></li>
| + | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Cloud">Cloud</a></li>
| + | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Compatibility">Compatibility</a></li>
| + | |
- | <li><a href="http://www.ugrad.cs.jhu.edu/~eisinger/iGEM/Screencast.mov">Screencast</a></li>
| + | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/DownloadSoftware">Download</a></li>
| + | |
- | </ul>
| + | |
- | </li>
| + | |
| | | |
- | <li><a href="#">Requirements</a>
| + | <p> Using Autogene’s feature database and alignment algorithms, we also did some preliminary cross-analysis of our annotations with those provided by the Registry of Standard Biological Parts for 10 biobrick parts. We noticed that there were a few differences between our annotations, and the ones provided. </p> |
- | <ul>
| + | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/MedalFulfillment">Medals</a></li>
| + | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Safety">Safety</a></li>
| + | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/Collaboration">Collaboration</a></li>
| + | |
- | </ul>
| + | |
- | </li>
| + | |
| | | |
- | <li><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/PathogenDetection">Human Practices</a>
| + | <p> </p> |
- | <ul>
| + | |
- |
| + | |
- | </ul>
| + | |
- | </li>
| + | |
- | </div>
| + | |
- |
| + | |
- | <div style = "position: absolute; top: 5px; right: 7px;"><a href="https://www.facebook.com/AutogeneJHU"><img src="http://www.theinternetwalloffame.com/facebook-icon.jpg" height="40px" style="border: none;"></a></div>
| + | |
| | | |
- |
| |
- |
| |
- | </div>
| |
- | </div>
| |
| </div> | | </div> |
- | | + | <br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br> |
- | <script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4.1/jquery.min.js"></script> | + | |
- | | + | |
- | | + | |
- | | + | |
- | <script type='text/javascript' src='http://ajax.googleapis.com/ajax/libs/jquery/1.3.2/jquery.min.js?ver=1.3.2'></script>
| + | |
- | | + | |
- | | + | |
- | <script type="text/javascript"> | + | |
- | | + | |
- | /*********************
| + | |
- | //* jQuery Drop Line Menu- By Dynamic Drive: http://www.dynamicdrive.com/
| + | |
- | //* Last updated: May 9th, 11'
| + | |
- | //* Menu avaiable at DD CSS Library: http://www.dynamicdrive.com/style/
| + | |
- | *********************/
| + | |
- | | + | |
- | var droplinemenu={
| + | |
- | | + | |
- | /*arrowimage: {classname: 'downarrowclass', src: '', leftpadding: 5}, //customize down arrow image*/
| + | |
- | animateduration: {over: 80, out: 50}, //duration of slide in/ out animation, in milliseconds
| + | |
- | | + | |
- | buildmenu:function(menuid){
| + | |
- | jQuery(document).ready(function($){
| + | |
- | var $mainmenu=$("#"+menuid+">ul")
| + | |
- | var $headers=$mainmenu.find("ul").parent()
| + | |
- | $headers.each(function(i){
| + | |
- | var $curobj=$(this)
| + | |
- | var $subul=$(this).find('ul:eq(0)')
| + | |
- | this._dimensions={h:$curobj.find('a:eq(0)').outerHeight()}
| + | |
- | this.istopheader=$curobj.parents("ul").length==1? true : false
| + | |
- | if (!this.istopheader)
| + | |
- | $subul.css({left:0, top:this._dimensions.h})
| + | |
- | var $innerheader=$curobj.children('a').eq(0)
| + | |
- | $innerheader=($innerheader.children().eq(0).is('span'))? $innerheader.children().eq(0) : $innerheader //if header contains inner SPAN, use that
| + | |
- | /* $innerheader.append(
| + | |
- | '<img src="'+ droplinemenu.arrowimage.src
| + | |
- | +'" class="' + droplinemenu.arrowimage.classname
| + | |
- | + '" style="border:0; padding-left: '+droplinemenu.arrowimage.leftpadding+'px" />'
| + | |
- | )*/
| + | |
- | $curobj.hoverIntent(
| + | |
- | function(e){
| + | |
- | var $targetul=$(this).children("ul:eq(0)")
| + | |
- | if ($targetul.queue().length<=1) //if 1 or less queued animations
| + | |
- | if (this.istopheader)
| + | |
- | $targetul.css({left: $mainmenu.position().left, top: $mainmenu.position().top+this._dimensions.h})
| + | |
- | if (document.all && !window.XMLHttpRequest) //detect IE6 or less, fix issue with overflow
| + | |
- | $mainmenu.find('ul').css({overflow: (this.istopheader)? 'hidden' : 'visible'})
| + | |
- | $targetul.dequeue().slideDown(droplinemenu.animateduration.over)
| + | |
- | },
| + | |
- | function(e){
| + | |
- | var $targetul=$(this).children("ul:eq(0)")
| + | |
- | $targetul.dequeue().slideUp(droplinemenu.animateduration.out)
| + | |
- | }
| + | |
- | ) //end hover
| + | |
- | }) //end $headers.each()
| + | |
- | $mainmenu.find("ul").css({display:'none', visibility:'visible', width:$mainmenu.width()})
| + | |
- | }) //end document.ready
| + | |
- | }
| + | |
- | }
| + | |
- | | + | |
- | </text> | + | |
- | | + | |
- | | + | |
- | <script type="text/javascript"> | + | |
- | | + | |
- | | + | |
- | var DDSPEED = 10;
| + | |
- | var DDTIMER = 15;
| + | |
- | | + | |
- | // main function to handle the mouse events //
| + | |
- | function ddMenu(id,d){
| + | |
- | var h = document.getElementById(id + '-ddheader');
| + | |
- | var c = document.getElementById(id + '-ddcontent');
| + | |
- | clearInterval(c.timer);
| + | |
- | if(d == 1){
| + | |
- | clearTimeout(h.timer);
| + | |
- | if(c.maxh && c.maxh <= c.offsetHeight){return}
| + | |
- | else if(!c.maxh){
| + | |
- | c.style.display = 'block';
| + | |
- | c.style.height = 'auto';
| + | |
- | c.maxh = c.offsetHeight;
| + | |
- | c.style.height = '0px';
| + | |
- | }
| + | |
- | c.timer = setInterval(function(){ddSlide(c,1)},DDTIMER);
| + | |
- | }else{
| + | |
- | h.timer = setTimeout(function(){ddCollapse(c)},50);
| + | |
- | }
| + | |
- | }
| + | |
- | | + | |
- | // collapse the menu //
| + | |
- | function ddCollapse(c){
| + | |
- | c.timer = setInterval(function(){ddSlide(c,-1)},DDTIMER);
| + | |
- | }
| + | |
- | | + | |
- | // cancel the collapse if a user rolls over the dropdown //
| + | |
- | function cancelHide(id){
| + | |
- | var h = document.getElementById(id + '-ddheader');
| + | |
- | var c = document.getElementById(id + '-ddcontent');
| + | |
- | clearTimeout(h.timer);
| + | |
- | clearInterval(c.timer);
| + | |
- | if(c.offsetHeight < c.maxh){
| + | |
- | c.timer = setInterval(function(){ddSlide(c,1)},DDTIMER);
| + | |
- | }
| + | |
- | }
| + | |
- | | + | |
- | // incrementally expand/contract the dropdown and change the opacity //
| + | |
- | function ddSlide(c,d){
| + | |
- | var currh = c.offsetHeight;
| + | |
- | var dist;
| + | |
- | if(d == 1){
| + | |
- | dist = (Math.round((c.maxh - currh) / DDSPEED));
| + | |
- | }else{
| + | |
- | dist = (Math.round(currh / DDSPEED));
| + | |
- | }
| + | |
- | if(dist <= 1 && d == 1){
| + | |
- | dist = 1;
| + | |
- | }
| + | |
- | c.style.height = currh + (dist * d) + 'px';
| + | |
- | c.style.opacity = currh / c.maxh;
| + | |
- | c.style.filter = 'alpha(opacity=' + (currh * 100 / c.maxh) + ')';
| + | |
- | if((currh < 2 && d != 1) || (currh > (c.maxh - 2) && d == 1)){
| + | |
- | clearInterval(c.timer);
| + | |
- | }
| + | |
- | }
| + | |
- | | + | |
- | </script> | + | |
- | | + | |
- | | + | |
- | <script type="text/javascript"> | + | |
- | /**
| + | |
- | * jQuery Opacity Rollover plugin
| + | |
- | *
| + | |
- | * Copyright (c) 2009 Trent Foley (http://trentacular.com)
| + | |
- | * Licensed under the MIT License:
| + | |
- | * http://www.opensource.org/licenses/mit-license.php
| + | |
- | */
| + | |
- | ;(function($) {
| + | |
- | var defaults = {
| + | |
- | mouseOutOpacity: 0.67,
| + | |
- | mouseOverOpacity: 1.0,
| + | |
- | fadeSpeed: 'fast',
| + | |
- | exemptionSelector: '.selected'
| + | |
- | };
| + | |
- | | + | |
- | $.fn.opacityrollover = function(settings) {
| + | |
- | // Initialize the effect
| + | |
- | $.extend(this, defaults, settings);
| + | |
- | | + | |
- | var config = this;
| + | |
- | | + | |
- | function fadeTo(element, opacity) {
| + | |
- | var $target = $(element);
| + | |
- |
| + | |
- | if (config.exemptionSelector)
| + | |
- | $target = $target.not(config.exemptionSelector);
| + | |
- |
| + | |
- | $target.fadeTo(config.fadeSpeed, opacity);
| + | |
- | }
| + | |
- | | + | |
- | this.css('opacity', this.mouseOutOpacity)
| + | |
- | .hover(
| + | |
- | function () {
| + | |
- | fadeTo(this, config.mouseOverOpacity);
| + | |
- | },
| + | |
- | function () {
| + | |
- | fadeTo(this, config.mouseOutOpacity);
| + | |
- | });
| + | |
- | | + | |
- | return this;
| + | |
- | };
| + | |
- | })(jQuery);
| + | |
- | | + | |
- | </script> | + | |
- | | + | |
- | | + | |
- | <script type="text/javascript"> | + | |
- | $(function() {
| + | |
- | | + | |
- | var offset = $("#navigation_low").offset();
| + | |
- | var topPadding = 0;
| + | |
- | | + | |
- | $(window).scroll(function() {
| + | |
- |
| + | |
- | if ($(window).scrollTop() > offset.top) {
| + | |
- |
| + | |
- | $("#navigation_low").stop().animate({
| + | |
- |
| + | |
- | marginTop: $(window).scrollTop() - offset.top + topPadding
| + | |
- |
| + | |
- | });
| + | |
- |
| + | |
- | } else {
| + | |
- |
| + | |
- | $("#navigation_low").stop().animate({
| + | |
- |
| + | |
- | marginTop: 0
| + | |
- |
| + | |
- | });
| + | |
- |
| + | |
- | }
| + | |
- |
| + | |
- |
| + | |
- | });
| + | |
- | | + | |
- | });
| + | |
- | | + | |
- | | + | |
- | </script> | + | |
- | | + | |
- | | + | |
- | <script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4/jquery.min.js"></script> | + | |
- | <script type="text/javascript"> | + | |
- | //build menu with DIV ID="myslidemenu" on page:
| + | |
- | droplinemenu.buildmenu("mydroplinemenu")
| + | |
- | | + | |
- | //Nivoslider
| + | |
- | $(window).load(function() {
| + | |
- | $('#slider').nivoSlider({
| + | |
- | effect:'fade',
| + | |
- | pauseOnHover:true
| + | |
- | });
| + | |
- | });
| + | |
- | | + | |
- | //Profile script from http://www.willmaster.com/library/web-development/replace-div-content.php
| + | |
- | function ReplaceContentInContainer(id,content) {
| + | |
- | var container = document.getElementById(id);
| + | |
- | container.innerHTML = content;
| + | |
- | }
| + | |
- | | + | |
- | </script> | + | |
- | | + | |
- | | + | |
- | | + | |
- | <script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4/jquery.min.js"></script> | + | |
- | <script src="https://2011.igem.org/Team:Johns_Hopkins/Templates/droplinemenu?action=raw&ctype=text/javascript" type="text/javascript"></script> | + | |
- | <script type="text/javascript" src="https://2011.igem.org/Team:Johns_Hopkins/Templates/nivosliderpack?action=raw&ctype=text/javascript"></script> | + | |
- | <script type="text/javascript" src="https://2011.igem.org/Team:Johns_Hopkins/Templates/hoverintent?action=raw&ctype=text/javascript"></script> | + | |
- | <script type="text/javascript" src="https://2011.igem.org/Team:Johns_Hopkins/Templates/galleriffic?action=raw&ctype=text/javascript"></script> | + | |
- | <script type="text/javascript" src="https://2011.igem.org/Team:Johns_Hopkins/Templates/js/opacityrollover?action=raw&ctype=text/javascript"></script> | + | |
- | <script type="text/javascript" src="https://2011.igem.org/Team:Johns_Hopkins/Templates/js/jqueryhistory?action=raw&ctype=text/javascript"></script> | + | |
- | <script type="text/javascript" src="https://2011.igem.org/Team:Johns_Hopkins/Templates/js/profile?action=raw&ctype=text/javascript"></script> | + | |
- | <script type="text/javascript" | + | |
- | src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
| + | |
- | </script> | + | |
- | <script type="text/javascript"> | + | |
- | //build menu with DIV ID="myslidemenu" on page:
| + | |
- | droplinemenu.buildmenu("mydroplinemenu")
| + | |
- | | + | |
- | //Nivoslider
| + | |
- | $(window).load(function() {
| + | |
- | $('#slider').nivoSlider({
| + | |
- | effect:'fade',
| + | |
- | pauseOnHover:true
| + | |
- | });
| + | |
- | });
| + | |
- | | + | |
- | //Profile script from http://www.willmaster.com/library/web-development/replace-div-content.php
| + | |
- | function ReplaceContentInContainer(id,content) {
| + | |
- | var container = document.getElementById(id);
| + | |
- | container.innerHTML = content;
| + | |
- | }
| + | |
- | | + | |
- | </script> | + | |
| </html> | | </html> |
| + | {{:Team:Johns_Hopkins-Software/header}} |