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Team:UT Dallas/pop3 o design
From 2012.igem.org
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Latest revision as of 02:41, 4 October 2012
Three Population Cascade Design
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For our three population signal propagation mechanism, we created three different strains using E.coli bacteria. These strains used three different quorum sensing molecules acyl homoserine-lactone (AHL), (autoinducer-1) Ai-1, and (autoinducer-2) Ai-2 coupled with yellow, red, and cyan fluorescent proteins to create a visual oscillating effect.
Population 1:
The sequence begins with the synthesis of LsrK. When LsrK binds with Ai-2 produced by the third population, it creates a phosphorylated dimer, referred to as “Ai-2 +P”, that binds to the PLsrA promoter. This promotes the transcription of both Luxl and the yellow fluorescence protein, YFP. Also, LuxI, when bound with S-adenosylmethionine (SAM), produces AHL.
Population 2:
The second population in the sequence is induced by the AHL produced by Population 1. When AHL is in the presence of the bacteria, it creates a dimer with LuxR that binds to PLuxR. PLuxR then promotes LasI which when bound with SAM produces Ai-1. RFP is attached to the end of the LasI gene, so that when LasI is produced, the bacterium also fluoresces red.
Population 3:
The third population in the sequence is induced by the Ai-1 molecules produced by Population 2. When Ai-1 is in the presence of the bacteria, it creates a dimer with LasR and binds to PLasR. PLasR then promotes LuxS which when bound with SAM produces Ai-2. CFP is attached to the end of the LuxS gene, so that when LuxS is produced, the bacterium fluoresces cyan.
Pseudo-population 3
This population consists of only a Constitutive promoter and LuxS. LuxS is the gene in Population 2 that produces the quorum sensing molecule Ai-2. This pseudo-population is used in testing whether the output of Population 3 will successfully promoter the production of Ai-2 and the yellow flourescence protein expression level in Population 1.
