Team:ETH Zurich/UVR8/Results

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However, high inductions of UVR8 are toxic for cells and impair cell growth (fig.3). Nevertheless, for our purposes we do not need high overexpression of the protein thus we tested repression dependency on protein induction.  
However, high inductions of UVR8 are toxic for cells and impair cell growth (fig.3). Nevertheless, for our purposes we do not need high overexpression of the protein thus we tested repression dependency on protein induction.  
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Since the expression of UVR8 is induced by IPTG, we varied IPTG concentrations. The results show that even small amounts, 0.01-0.025 mM, of inducer results in GFP repression which does not impair cell growth (fig.4).   
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Since the expression of UVR8 is induced by IPTG, we varied IPTG concentrations. The results show that even small amounts, 0.01-0.025 mM, of inducer results in GFP repression which does not impair cell growth (fig.4 and fig.5).   

Revision as of 23:46, 26 September 2012

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Navigate through Overview, Design and Results


Contents

Repression studies

Figure 1: Fluorescence normalized to the OD for wt, reporter only, TetR and TetRDBD.

In order to test whether a UVR8 fusion with the TetR DNA binding domain (TetRDBD) is reasonable, we first had to test, if our used TetRDBD is not able to repress the expression of GFP that is controlled by a Ptet promoter. For this purpose we measured the fluorescence from three different cultures: reporter only, reporter co-transfected with full length TetR or TetRDBD. Cells without any plasmid termed WT were used as a background fluorescence control.

As expected, cells with reporter only showed high GFP fluorescence, whereas cells containing full length tetR have a tightly repressed GFP production. In addition, cells expressing TetRDBD also express GFP at similar levels to those with just the reporter plasmid (see figure 1). These results can be explained in two ways: dimerizing domain is required for proper TetRDBD folding. Another explanation would be that TetR can bind Ptet more efficiently due to cooperativity. If the latter is true, fusion of the TetRDBD with proteins, that are able to dimerize, would restore its activity to repress the Ptet promoter.



Thus we fused TetRDBD with three versions of UVR8 proteins each varying in linker length. Again, fluorescence from cells having fusion proteins containing plasmid together with a reporter plasmid was compared with reporter only and wildtype. Fig.2 shows that we are able to repress GFP production by fusing TetRDBD with UVR8. We limit our further studies to the best performing chimera – TetRDBD-dUVR8.


Figure 2: Comparison of different TetRDBD-dUVR8 fusions with TetR and reporter only


Figure 3: Cell growth dependent on UVR8 expression


However, high inductions of UVR8 are toxic for cells and impair cell growth (fig.3). Nevertheless, for our purposes we do not need high overexpression of the protein thus we tested repression dependency on protein induction. Since the expression of UVR8 is induced by IPTG, we varied IPTG concentrations. The results show that even small amounts, 0.01-0.025 mM, of inducer results in GFP repression which does not impair cell growth (fig.4 and fig.5).


Figure 4: Repression dependent on UVR8 concentration
Figure 5: Cells expressing TetRDBD-UVR8 grow at low inducer IPTG concentrations


New part TetRDBD

We showed that the TetR monomer is unable to repress the Ptet promoter. This phenomenon makes our new part [http://partsregistry.org/Part:BBa_K909007 BBa_K909007] a powerful tool. Any protein can be fused in case the coding DNA contains a BamHI restriction site. By that fusion, any protein able to dimerize acts as a transcriptional repressor. By combining the Ptet promoter and any reporter gene, one can test whether certain proteins are able to dimerize in a cell or not.


Achievements so far

  • TetRDBD only binds to DNA as a dimer
    • enables to use TetRDBD in a two-hybrid screening or as a switch
  • TetRDBD-UVR8 fusion is able to act as a repressor


Plans

In a next step we plan to measure also the derepression of the UVR8-TetRDBD fusion by screening its UV response with the plate reader and carry out single cell analysis by FACS and finally join UVR8 and PABA systems/RecA and show increased E.coli UV-B tolerance (sun cream properties).

  • UVR8 fusion purification: In vitro studies
  • Find constants for dimerization, monomerization DNA binding etc.


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