Team:Uppsala University/Modelling
From 2012.igem.org
(Added both YFP-matching sequences plus some text) |
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Also our predictions data from CLC shows that the hybridizing area have a strong secondary structure, with small hairpin loops. | Also our predictions data from CLC shows that the hybridizing area have a strong secondary structure, with small hairpin loops. | ||
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<b>sRNA UU17</b> | <b>sRNA UU17</b> | ||
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<b>sRNA UU37</b> | <b>sRNA UU37</b> | ||
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<b>sRNA UU46</b> | <b>sRNA UU46</b> | ||
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<b>sRNA UU55</b> | <b>sRNA UU55</b> | ||
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+ | Below are two examples of structures that were found to match regions in the coding sequence of the SYFP2. It is apparent that false positives will appear when using a reporter system that itself can be repressed, but by modelling interactions with the target mRNA, we save much time knowing which sRNAs are not of direct interest. | ||
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+ | <b>sRNA UU52</b> | ||
<table id="ptable"> | <table id="ptable"> | ||
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<b>sRNA UU53</b> | <b>sRNA UU53</b> | ||
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Revision as of 13:20, 26 September 2012
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sRNA UU46 sRNA UU55
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