Team:Dundee/References

Blondel, C.J., Jimenez, J.C., Contreras, I., and Santiviago, C.A. (2009) Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics 10:35

Cascales E, Cambillau C. (2012) Structural biology of type VI secretion systems. Philosophical Transactions of The Royal Society B- Biological Sciences: 367: pp 1102- 1111

Desvaux M., Parham N.J. and Henderson I.R. (2003) The autotransporter secretion system. Research in Microbiology: 155(2004): pp 53-60

Hueck C.J. (1998) Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiology and molecular biology reviews. 62(2): pp 379-433

Mayer M.J., Narbad A. and Gasson M.J. (2008) Molecular characterization of a Clostridium difficile bacteriophage and its cloned biologically active endolysin. Journal of Bacteriology 190(20) pp. 6734-6740

Na S.H., Miyanaga K., Unno H. and Tanji Y. (2006) The survival response of Escherichia coli K12 in a natural environment. Environmental Biotechnology 72. pp. 386-392

Reynolds, C.B, et al. (2011) The Clostridium difficile Cell wall protein CwpV is antigenically variable between strains, but exhibits conserved aggregation-promoting function. PLoS Pathog 7: e1002024. doi:10.1371/journal.ppat.1002024

Swords, E.W. Cannon, B.M. and Benjamin, Jr, W.H. (1997) A virulence of LT2 Strains of Salmonella typhimurium Results from a Defective rpoS Gene. American Society for Microbiology 65: 2451-2453

Sandkvist M. (2001) Biology of type II secretion. Molecular Microbiology: 40 (2): pp 271-283

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The University of Dundee iGem (2011) Safety and Security. [WWW] Available from: https://2011.igem.org/Team:Dundee/Safety [Accessed 21/08/2012]

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Biotium (2011) Safety Report of GelRed and GelGreen. [WWW] Nucleic Acid Detection Technologies. Available at: http://www.biotium.com/product/product_info/Safety_Report/GR%20&%20GG%20safety.pdf [Accessed 21/08/2012]

College of Life Sciences (2009) Basic Health & Safety Training Checklist. [WWW] Version 11, Available at: https://www.lifesci.dundee.ac.uk/services/healthandsafety/training/btc.pdf [Accessed 21/08/2012]

College of Life Sciences. ClS Risk Assessment (2011) Practical demonstration involving LB agar plates with school children at an external venue. [pdf] Available at: https://static.igem.org/mediawiki/igem.org/3/37/Dundee12Risk_assessment_agar_plates.pdf

College of Life Sciences. GM microorganism risk assessment (2012) Creating a new type of synthetic E. coli expressing a type VI secretion system incorporating a C. difficile specific endolysin. [pdf] Available at:
https://static.igem.org/mediawiki/igem.org/c/c6/Dundee122012_risk_assesment.pdf

College of Life Sciences. Safe operating procedure (2012) Containment level 1: General Laboratory. [pdf] Available at: https://static.igem.org/mediawiki/igem.org/f/fc/Dundee12Safe_op_level_1.pdf

College of Life Sciences. Safe operating procedure (2012) Containment level 2: General Laboratory. [pdf] Available at: https://static.igem.org/mediawiki/igem.org/a/ab/Dundee12Safe_operating_procedure.pdf

Health and Safety Executive. [WWW] Available at: http://www.hse.gov.uk/index.htm [Accessed 28/08/2012]

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U.S. Department of health and human services (2008) Toxicological profile for Phenol. [WWW] Agency for Toxic Substances and Disease Registry. Available at: http://www.atsdr.cdc.gov/toxprofiles/tp115.pdf [Accessed 21/08/2012]

U.S. Department of health and human services (2009) Draft Toxicological Profile for Acrylamide. [WWW] Available at: http://www.atsdr.cdc.gov/toxprofiles/tp203.pdf [Accessed 21/08/2012]

U.S. Environmental Protection Agency. Escherichia coli K12 Derivatives Final Risk Assessment (1997) [WWW] Available at: http://epa.gov/biotech_rule/pubs/fra/fra004.htm [Accessed 05/09/2012]

World Health Organisation (WHO) (2004) Laboratory biosafety manual. [WWW] Available at: http://www.who.int/csr/resources/publications/biosafety/Biosafety7.pdf [Accessed 27/08/2012]


Software references
[1] Cartoon Network. [online] Available at: www.cartoonnetwork.co.uk [Accessed 21/08/2012].

[2] Simple Directmedia Layer. [online] Available at: http://www.libsdl.org [Accessed 21/08/2012].

[3] Krasner, G. E., Pope, S. T., 1988. A Cookbook for Using the Model-View-Controller User Interface Paradigm in Smalltalk-80. Journal of Object Oriented Programming, Vol 1 (3), 26-49.

[4] Von Neumann, J. and Burks, A. W., 1966. Theory of Self-Reproducing Automata. Urbana: University of Illinois