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Team:LMU-Munich/Lab Notebook/Protocols
From 2012.igem.org
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3. [https://static.igem.org/mediawiki/2012/0/00/LMU-Munich_2012_Isolation_of_chromosomal_DNA_from_Bacillus_subtilis_for_transformation.pdf Isolation of chromosomal DNA from ''Bacillus subtilis'' for transformation] | 3. [https://static.igem.org/mediawiki/2012/0/00/LMU-Munich_2012_Isolation_of_chromosomal_DNA_from_Bacillus_subtilis_for_transformation.pdf Isolation of chromosomal DNA from ''Bacillus subtilis'' for transformation] | ||
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| + | A quick protocol for how to isolate genomic DNA from ''B. subtilis'' to transform it to a different strain. By this means, you can very easily combine different ''B. subtilis'' genotypes. Transformation of genomic DNA is much more efficient than plasmids. Isolated DNA with this protocol is not clean! | ||
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4. How to test integration of B. subtilis vectors | 4. How to test integration of B. subtilis vectors | ||
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| - | + | 5. [https://static.igem.org/mediawiki/2012/6/6b/LMU-Munich_2012_Isolation_of_genomic_DNA_from_Bacillus_%28for_PCR....%29.pdf Isolation of chromosomal DNA from ''Bacillus subtilis'' (for PCR....)] | |
Isolation of pure genomic DNA from ''B. subtilis''. | Isolation of pure genomic DNA from ''B. subtilis''. | ||
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| - | + | 6. [https://static.igem.org/mediawiki/2012/7/7a/LMU-Munich_2012_Long-Flanking_Homology_PCR.pdf Long Flanking Homology PCR] | |
PCR protocol for long flanking homology PCR. You might need those PCR products for interrupting genes with resistance cassettes. | PCR protocol for long flanking homology PCR. You might need those PCR products for interrupting genes with resistance cassettes. | ||
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| - | + | 7. [https://static.igem.org/mediawiki/2012/6/6d/LMU-Munich_2012_Clean_deletions_in_Bacillus_subtilis.pdf Clean deletion of genomic fragments in ''Bacillus subtilis''] | |
Protocol for the production of markerless gene deletions. You will need the [http://www.ncbi.nlm.nih.gov/pubmed/15528558 pMAD] plasmid. This method is more time consuming than inserting resistance cassettes but offers better cell perfomance. | Protocol for the production of markerless gene deletions. You will need the [http://www.ncbi.nlm.nih.gov/pubmed/15528558 pMAD] plasmid. This method is more time consuming than inserting resistance cassettes but offers better cell perfomance. | ||
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| - | + | 8. [https://static.igem.org/mediawiki/2012/6/66/LMU-Munich_2012_Spore_germination_assay.pdf Spore germination assay] | |
Protocol to count efficiency of sporulation and germination. | Protocol to count efficiency of sporulation and germination. | ||
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| - | + | 9. [https://static.igem.org/mediawiki/2012/7/70/LMU-Munich_2012_%C3%9F-Galactosidase_Assay_B._subtilis.pdf ß-Galactosidase Assay ''B. subtilis''] | |
Protocol how to measure ''lacZ'' gene activity in ''B. subtilis'' | Protocol how to measure ''lacZ'' gene activity in ''B. subtilis'' | ||
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===Other protocols we used=== | ===Other protocols we used=== | ||
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E. coli antibiotics concentrations | E. coli antibiotics concentrations | ||
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E.coli dreck-prep | E.coli dreck-prep | ||
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Kompetente E.colis | Kompetente E.colis | ||
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Ligation, Verdau | Ligation, Verdau | ||
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E.coli trafo | E.coli trafo | ||
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lacZ assay in E.coli | lacZ assay in E.coli | ||
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Plate reader assay | Plate reader assay | ||
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Mikroskopie der Sporen | Mikroskopie der Sporen | ||
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(Proteinase K) | (Proteinase K) | ||
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(Western Blot) | (Western Blot) | ||
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{{:Team:LMU-Munich/Templates/Page Footer}} | {{:Team:LMU-Munich/Templates/Page Footer}} | ||
Revision as of 10:27, 15 September 2012
The LMU-Munich team is exuberantly happy about the great success at the World Championship Jamboree in Boston. Our project Beadzillus finished 4th and won the prize for the "Best Wiki" (with Slovenia) and "Best New Application Project".
[ more news ]
Protocols
On this page, we offer our unique protocols to the public.
Because Bacillus subtilis is our choice organism, we have focused on protocols specifically for Bacillus.
However below, you will also find other standard protocols we use.
Protocols for the work with B. subtilis
1. Media and components for Bacillus subtilis
This protocol gives the recipes for various media and the antibiotic concentrations used for B. subtilis.
2. Transformation of Bacillus subtilis
Protocol for the transformation of B. subtilis.
3. Isolation of chromosomal DNA from Bacillus subtilis for transformation
A quick protocol for how to isolate genomic DNA from B. subtilis to transform it to a different strain. By this means, you can very easily combine different B. subtilis genotypes. Transformation of genomic DNA is much more efficient than plasmids. Isolated DNA with this protocol is not clean!
4. How to test integration of B. subtilis vectors
5. Isolation of chromosomal DNA from Bacillus subtilis (for PCR....)
Isolation of pure genomic DNA from B. subtilis.
PCR protocol for long flanking homology PCR. You might need those PCR products for interrupting genes with resistance cassettes.
7. Clean deletion of genomic fragments in Bacillus subtilis
Protocol for the production of markerless gene deletions. You will need the [http://www.ncbi.nlm.nih.gov/pubmed/15528558 pMAD] plasmid. This method is more time consuming than inserting resistance cassettes but offers better cell perfomance.
Protocol to count efficiency of sporulation and germination.
9. ß-Galactosidase Assay B. subtilis
Protocol how to measure lacZ gene activity in B. subtilis
Other protocols we used
E. coli antibiotics concentrations
E.coli dreck-prep
Kompetente E.colis
Ligation, Verdau
E.coli trafo
lacZ assay in E.coli
Plate reader assay
Mikroskopie der Sporen
(Proteinase K)
(Western Blot)
