Team:UIUC-Illinois

From 2012.igem.org

(Difference between revisions)
 
(190 intermediate revisions not shown)
Line 8: Line 8:
<title>Main</title>
<title>Main</title>
<link href="CSS/css.css" rel="stylesheet" type="text/css" />
<link href="CSS/css.css" rel="stylesheet" type="text/css" />
 +
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js"></script>
 +
<script src="http://illinoisigem.googlecode.com/files/galleria-1.2.7.min.js"></script>
</head>
</head>
 +
 +
 +
 +
 +
 +
 +
<script>
 +
 +
$(document).ready(function(){
 +
    $('a').click(function () {
 +
        var divname= this.name;
 +
        $("#"+divname)
 +
.fadeIn(300)
 +
.siblings()
 +
.hide(0);
 +
    });
 +
});
 +
 +
</script>
<body>
<body>
Line 14: Line 35:
<!--Content Start-->
<!--Content Start-->
-
    <div id="content1-topcenter">
+
<div id=intro>
-
<center>Mission Statement / Welcome / Introduction</center>
+
<center><h1>Mission Statement</h1></center>
-
<object width='1000' height='500'><param name='movie' value='http://www.slideflickr.com/slide/Otxp5xCv'></param><param name='wmode' value='transparent'></param><embed src='http://www.slideflickr.com/slide/Otxp5xCv' type='application/x-shockwave-flash' wmode='transparent' width='1000' height='500'></embed></object>
+
<p>The ultimate goal of the University of Illinois 2012 iGEM team is to construct an RNA-based PUF protein toolkit which can be utilized for the manipulation of gene expression. Customizable manipulation will involve gene silencing by specific RNA scission. Also, the PUF protein's properties are suited for optimizing multi-step enzymatic pathways. In this way, we aim to improve the versatility and cost efficiency of biological production systems. With a protein-based RNA-binding toolkit, researchers will be able to transmute the biobricked PUF for use in their scientific endeavors. In addition, we seek to standardize and characterize the nature of PUF. <br/><center><font size="5"><a href="https://2012.igem.org/Team:UIUC-Illinois/Project"> Click here to read our project abstract.</a></font></center></p><br/>
-
    </div>  
+
</div>
-
<div id="content-containertop">
+
<div id="ancillaryIntro">
-
    <div id="content-topleft">
+
<center><h2>Our Research Outside of PUF Itself</h2></center><br/>
-
<h1>PROJECT PUF</h1>
+
<p>Aside from researching the RNA specific affinity of PUF and its endonuclease fusion protein variants, we have also explored and tested other potential applications for PUF. Mainly, our ancillary projects directly related to PUF include our RNA scaffold and an <a href="https://2012.igem.org/Team:UIUC-Illinois/Project/Future/AssemblyLine">enzymatic assembly line</a> based on such a scaffold. Additionally, <a href="https://2012.igem.org/Team:UIUC-Illinois/Project/Future/Petrobrick">we have characterized</a> the 2011 University of Washington iGEM team's Petrobrick <a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K590025">(BBa_K590025)</a>.<br/><br/>
-
        <p>This project is focused on creating and optimizing a construct for the production and customization of the PUM protein. In doing so, our team is looking to standardize the method in which the RNA binding protein can be used as a toolkit in Biobrick format. With a toolkit we hope to produce utility with biological parts while following the philosophies of engineering. This toolkit will then be used in various ways to further control distinct aspects of anything involving RNA.</p>
+
 
-
        </div>
+
Outside the dry and wet labs, we have invested ourselves in a human practices project and public awareness and education about synthetic biology and science in general. To learn more, please visit <a href="https://2012.igem.org/Team:UIUC-Illinois/Outreach">our Outreach section</a>.
-
    <div id="content-topright">
+
</div>
-
<h1>PROJECT PHAT</h1>
+
<div id="content-containertop">
-
        <p>The project dubbed "PHAT" has its focus on a metabolite of the widely studied chemical, Resveratrol. The metabolite of Resveratrol, Piceatannol has recently been discovered to have unique properties which can be heavily utilized in pharmaceutical industries. Our team seeks to integrate the disciplines of synthetic biology with aspects of chemical engineering to find efficient ways to produce and improve upon Piceatannol production.</p>
+
</div>
-
    </div>
+
 
-
    </div>
+
<div id="maincontentnav">
 +
 
 +
<div id="maincontentselection">
 +
                    <li><a name="main1"><img src="https://static.igem.org/mediawiki/2012/e/e2/Cascadeuiuc.png" /></a></li>
 +
                    <li><a name="main2"><img src="https://static.igem.org/mediawiki/2012/6/66/Pufuiuc.png" /></a></li>
 +
</div>
 +
<div id="maincontentselection3">
 +
                    <li><a name="main4"><img src="https://static.igem.org/mediawiki/2012/2/29/Stemloops2uiuc.png"  /></a></li>
 +
</div>
 +
 
 +
<div id="maincontentselection2">
 +
                    <li><a name="main3"><img src="https://static.igem.org/mediawiki/2012/a/ae/Scissoruiuc.png" /></a></li>
 +
</div>
 +
 
 +
</div>
 +
 
 +
<div id="maincontentdesc">
 +
 
 +
<font size="5">
 +
<center><p>Click above on a part of our project that you want to read about.</p></center></font>
 +
 
 +
<div id="main1" style="display:none">
 +
<center><h2><a href="https://2012.igem.org/Team:UIUC-Illinois/Project/Future/AssemblyLine">Enzymatic Assembly Line</a></h2><br/><center>
 +
<center>
 +
<p>In utilizing the versatility of the PUF based toolkit we are developing, our current research involves an engineered metabolic pathway. The characterization and standardization of these genes in biobrick format is underway. Future goals involving the PUF toolkit will focus on tethering enzymes of productive artificial or natural pathways for kinetic favorability.</p>
 +
</center>
 +
</div>
 +
 
 +
<div id="main2" style="display:none">
 +
<center><h2><a href="https://2012.igem.org/Team:UIUC-Illinois/Project">PUF</a></h2><br/></center>
 +
<center>
 +
<p>This is the PUF protein found on the PUM1 gene in humans. Our main focus and cause of interest in this protein is its ability to recognize single stranded RNA with specificity. The ability to modify PUF with tethered or fused proteins allows for the development of a customizable RNA binding toolkit. Depending on what fusion or tether is used, the functionality of the PUF protein is modified as well.</p>
 +
</center>
 +
</div>
 +
 
 +
<div id="main3" style="display:none">
 +
<center><h2><a href="https://2012.igem.org/Team:UIUC-Illinois/Project">RNA scission</a></h2><br/></center>
 +
<center>
 +
<p>In fusion the PUF protein to a restriction endonuclease, the fusion protein demonstrates the ability to cleave single stranded RNA molecules with customizable specificity up to eight base pairs. Considering this ability, we believe PUF can prove itself as a promising new tool in researching and developing new types of gene therapy as it can silence genes with seqeunces specific to a reseachers interest.></p>
 +
</center>
 +
</div>
 +
 
 +
<div id="main4" style="display:none">
 +
<center><h2><a href="https://2012.igem.org/Team:UIUC-Illinois/Project/Future/Scaffold">RNA scaffold utilization</a></h2><br/></center>
 +
<center>
 +
<p>Since PUF has affinity towards RNA molecules, it is possible to synthesize or utilize existing stemloop structures in RNA in order to provide a kinetically favorable platform for tethered proteins to interact. </p>
 +
</center>
 +
</div>
 +
</div>
 +
 
 +
</div>
<div id="sponsorbox">
<div id="sponsorbox">
-
<center>Sponsors</center>
+
<center><h2><font size="5"> Sponsors</font></h2></center>
 +
 
 +
<br/>
 +
 
 +
<div id="row1logos">
 +
<center>
 +
<a href="https://www.goldbio.com/">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/1/15/Goldbio_logo.jpg" Hspace="30" Vspace="5" alt="goldbiologo" />
 +
</a>
 +
<a href="http://www.genscript.com/">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/e/e4/Genscriptlogo.gif" height=25% width=30% Hspace="30" Vspace="5" alt="genscriptlogo" />
 +
</a>
 +
<a href="http://www.octochem.com/">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/5/56/Octochem_logo.png" Hspace="30" Vspace="5" alt="octochemlogo" />
 +
</a>
 +
</center>
 +
</div>
 +
 
 +
<br/>
 +
 
 +
<div id="row2logos">
 +
<center>
 +
<a href="http://www.biotech.uiuc.edu/">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/9/9a/Royj.png" Hspace="10" Vspace="5" alt="royjlogo" />
 +
</a>
 +
 
 +
<a href="http://www.las.illinois.edu/">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/1/1c/LasUIUC.png" Hspace="10" Vspace="5" alt="laslogo" />
 +
</a>
 +
 
 +
 
 +
</center>
 +
</div>
 +
 
 +
<br/>
 +
 
 +
<div id="igblogo">
 +
<center>
 +
<a href="http://www.igb.uiuc.edu">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/e/e7/Igb_logo.png" Hspace="30" Vspace="5" alt="igblogo" />
 +
</a>
 +
 
 +
<a href="http://www.sarstedt.com/php/main.php">
 +
<img border="0" src="https://static.igem.org/mediawiki/2012/5/56/Sras.png" Hspace="10" Vspace="5" alt="sarstlogo" />
 +
</a>
 +
 
 +
 
 +
</center>
 +
</div>
 +
 
</div>
</div>
      
      

Latest revision as of 08:17, 15 February 2013

Header

Main

Mission Statement

The ultimate goal of the University of Illinois 2012 iGEM team is to construct an RNA-based PUF protein toolkit which can be utilized for the manipulation of gene expression. Customizable manipulation will involve gene silencing by specific RNA scission. Also, the PUF protein's properties are suited for optimizing multi-step enzymatic pathways. In this way, we aim to improve the versatility and cost efficiency of biological production systems. With a protein-based RNA-binding toolkit, researchers will be able to transmute the biobricked PUF for use in their scientific endeavors. In addition, we seek to standardize and characterize the nature of PUF.

Click here to read our project abstract.


Our Research Outside of PUF Itself


Aside from researching the RNA specific affinity of PUF and its endonuclease fusion protein variants, we have also explored and tested other potential applications for PUF. Mainly, our ancillary projects directly related to PUF include our RNA scaffold and an enzymatic assembly line based on such a scaffold. Additionally, we have characterized the 2011 University of Washington iGEM team's Petrobrick (BBa_K590025).

Outside the dry and wet labs, we have invested ourselves in a human practices project and public awareness and education about synthetic biology and science in general. To learn more, please visit our Outreach section.

    • Click above on a part of our project that you want to read about.

    Sponsors


    goldbiologo genscriptlogo octochemlogo

    royjlogo laslogo

    Retrieved from "http://2012.igem.org/Team:UIUC-Illinois"