Team:St Andrews

From 2012.igem.org

(Difference between revisions)
 
(368 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+
{{:Team:St_Andrews/Template:Header}}
<html>
<html>
-
 
<head>
<head>
-
<link rel="stylesheet" type="text/css" href="http://dl.dropbox.com/u/491730/st-andrews-igem.css" />
+
    <title>StA iGEM Wiki 2012 - Home</title>
-
<link rel="stylesheet" type="text/css" href="http://dl.dropbox.com/u/491730/bootstrap.min.css" />
+
   
-
<link rel="stylesheet" type="text/css" href="http://dl.dropbox.com/u/491730/bootstrap-responsive.min.css" />
+
    <link href='http://fonts.googleapis.com/css?family=PT+Serif:400,700italic,700&subset=latin,cyrillic' rel='stylesheet' type='text/css'>
 +
<style type="text/css">
 +
 
 +
#logo {
 +
        font-family: "PT Serif", Arial, serif; font-weight: 700;
 +
      }
 +
#font-bigger {
 +
        font-size: 100px;
 +
      }
 +
#font-thin {
 +
        font-family: "PT Sans", Arial, serif; font-weight: 300;
 +
      }
 +
.btn-group {line-height:2}
 +
</style>
 +
 
</head>
</head>
 +
<body id="body-pattern">
 +
<script type="text/javascript">//<![CDATA[
 +
$(function(){
 +
$(' #sameheight').css({
 +
    'height': $('#sameheight').height() + 30
 +
});
 +
});//]]> 
-
<body>
+
</script>
-
<div class="navbar navbar-fixed-top">
+
    <div class="container" id="content-container">
-
      <div class="navbar-inner">
+
-
        <div class="container">
+
-
          <a class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
+
-
            <span class="icon-bar"></span>
+
-
            <span class="icon-bar"></span>
+
-
            <span class="icon-bar"></span>
+
-
          </a>
+
-
          <a class="brand" href="#">Project name</a>
+
-
          <div class="nav-collapse">
+
-
            <ul class="nav">
+
-
              <li class="active"><a href="#">Home</a></li>
+
-
              <li><a href="#about">About</a></li>
+
-
              <li><a href="#contact">Contact</a></li>
+
-
            </ul>
+
-
          </div><!--/.nav-collapse -->
+
-
        </div>
+
-
      </div>
+
-
    </div>
+
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
 
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
 
 +
    <div class="hero-unit span10" style="background-color:#ffffff">
 +
        <div class="row">
 +
            <div class="span8">
 +
                <h1 id="font-bigger"><b><i id="logo">re</i><font size="4">    </font></b><span id="font-thin">source</span></h1>
 +
                <p>University of St Andrews' team for 2012 <em>International Genetically Engineered Machine competition</em></p>
 +
<p>Alternative omega-3 production and novel metal recovery methods</p>
 +
            </div>
-
This is a template page. READ THESE INSTRUCTIONS.
+
            <div class="span2"><img src="https://static.igem.org/mediawiki/2012/a/ad/Crest.gif" alt="University of St Andrews coat of arms" /></div>
 +
        </div><!--
 +
        <div class="jumbotron" id="jumbotron" align="center">
 +
           
 +
        </div>
 +
        -->
 +
    </div>
 +
    <div class="container-fluid">
 +
        <div class="row-fluid">
 +
            <div class="span6">
 +
<h1><a href="https://2012.igem.org/Team:St_Andrews/metal-binding">Metal binding protein</a></h1>
 +
<div class="btn-group">
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925002”><span class="badge">BBa_K925002</span></a>
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925004”><span class="badge">BBa_K925004</span></a>
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925005”><span class="badge">BBa_K925005</span></a>
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925006”><span class="badge">BBa_K925006</span></a></button>
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925007”><span class="badge">BBa_K925007</span></a></button>
</div>
</div>
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
<img src="https://static.igem.org/mediawiki/2012/9/9f/MetalBindingLogo_100.png" align="left" />              
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
+
<p></p>
-
</div>
+
<p>Precious and toxic metals from car catalysts frequently find their way into the
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
environment. By developing metal-binding proteins, we can reverse metal aggregation on our roads. This not only reduces the environmental impact of personal transportation, but will proffer a new man-made mine of precious metals.</p>
-
You <strong>MUST</strong> have all of the pages listed in the menu below with the names specified. PLEASE keep all of your pages within your teams namespace.
+
 
</div>
</div>
 +
 +
   
 +
            <div class="span6" >
 +
                <h1></h1>
 +
<h1><a href="https://2012.igem.org/Team:St_Andrews/Omega-3-synthesis">ω−3 fatty acids synthesis</a></h1>
 +
<div class="btn-group">
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925000”><span class="badge">BBa_K925000</span></a>
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925001”><span class="badge">BBa_K925001</span></a>
 +
<a href=”http://partsregistry.org/wiki/index.php?title=Part:BBa_K925003”><span class="badge">BBa_K925003</span></a>
</div>
</div>
 +
<img src="https://static.igem.org/mediawiki/2012/5/57/OmegaThreeLogo_100.png" align="left" />               
 +
<p></p>
 +
          <p>ω-3 fatty acid is a key component of the healthy human diet. The nutrient is only synthesized naturally in a handful of organisms (algae and oil-rich plants). Our team partially recreated the pathway for ω-3 production in <i>E. coli</i> using genes from the cyanobacteria <i>Synechocystis</i>, despite the difficulty of working with membrane-bound proteins. Until now, synthetic ω-3 production has only been achieved in plants. 
 +
</p>
-
<div class="hero-unit">
+
 
-
  <h1>Heading</h1>
+
 
-
  <p>Tagline</p>
+
            </div>
-
  <p>
+
-
    <a class="btn btn-primary btn-large">
+
-
      Learn more
+
-
    </a>
+
-
  </p>
+
</div>
</div>
 +
        <div class="row-fluid">
-
</body>
+
            <div class="span6" >
 +
<br>
 +
<h1><a href="https://2012.igem.org/Team:St_Andrews/Human-practices">Scientific impact of iGEM</a></h1>
-
</html>
+
<img src="https://static.igem.org/mediawiki/2012/a/ac/ImpactLogo_100.png" align="left" />
 +
<p></p>
 +
                <p>We investigate the relationship between the iGEM competition and the rest of the scientific community. Is iGEM <em>really</em> having scientific impact? How often, how fairly and by whom are iGEM teams cited? Does the iGEM competition result in scholarly articles being published? What can guarantee continued recognition within the SynBio community?</p>
-
<!-- *** End of the alert box *** -->
+
            </div>
 +
<br>
 +
            <div class="span6" >
 +
<h1><a href="https://2012.igem.org/Team:St_Andrews/Modelling">The mathematics of ω-3</a></h1>
 +
<img src="https://static.igem.org/mediawiki/2012/f/f0/ModSquadLogo_100.png" align="left" />
 +
<p></p>
 +
                <p>We modelled fish population dynamics. Our result: if we continue fishing in the current manner, by 2100, only a fraction of present day biomass will remain.  Yet, there is hope.  Indeed, realizing Team St Andrews' alternative production of omega-3 could be the measure necessary to save our seas.  We investigated the effect that alternative production can have on future fish biomass, as well as the practicalities of preserving life in this manner.</p>
 +
            </div>
 +
        </div>
 +
    </div>
-
{|align="justify"
+
              <div class="marketing">
-
|You can write a background of your team here.  Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
+
                    <hr class="soften">
-
|[[Image:St_Andrews_logo.png|200px|right|frame]]
+
                </div>
-
|-
+
-
|
+
-
''Tell us more about your project.  Give us background.  Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
+
-
|[[Image:St_Andrews_team.png|right|frame|Your team picture]]
+
-
|-
+
-
|
+
-
|align="center"|[[Team:St_Andrews | Team St_Andrews]]
+
-
|}
+
-
<!--- The Mission, Experiments --->
+
    <div class="container-fluid">
 +
        <div class="row-fluid">
 +
            <div class="span9">
 +
 
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
-
!align="center"|[[Team:St_Andrews|Home]]
+
 
-
!align="center"|[[Team:St_Andrews/Team|Team]]
+
                <div class="row">
-
!align="center"|[https://igem.org/Team.cgi?year=2012&team_name=St_Andrews Official Team Profile]
+
                    <h1>Sponsors</h1>
-
!align="center"|[[Team:St_Andrews/Project|Project]]
+
 
-
!align="center"|[[Team:St_Andrews/Parts|Parts Submitted to the Registry]]
+
                    <ul class="thumbnails">
-
!align="center"|[[Team:St_Andrews/Modeling|Modeling]]
+
                        <li class="span3"><a href="http://www.wellcome.ac.uk/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/wellcomeTrust.jpg" alt=""></a></li>
-
!align="center"|[[Team:St_Andrews/Notebook|Notebook]]
+
 
-
!align="center"|[[Team:St_Andrews/Safety|Safety]]
+
                        <li class="span3"><a href="http://www.genscript.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/GenScript_LOGO.jpg" alt=""></a></li>
-
!align="center"|[[Team:St_Andrews/Attributions|Attributions]]
+
 
-
|}
+
                        <li class="span3"><a href="http://www.geneious.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/Geneious%20Logo.gif" alt=""></a></li>
 +
 
 +
                        <li class="span3"><a href="http://www.clcbio.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/clcbio%2Bslogan_white.png" alt=""></a></li>
 +
                    </ul>
 +
 
 +
                    <ul class="thumbnails">
 +
                        <li class="span3"><a href="http://www.biosilta.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/Biosilta.jpg" alt=""></a></li>
 +
 
 +
                        <li class="span3"><a href="http://www.clontech.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/Clontech_solo.png" alt=""></a></li>
 +
 
 +
                        <li class="span3"><a href="http://www.epochlifescience.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/epochLifeSciences.png" alt=""></a></li>
 +
 
 +
                        <li class="span3"><a href="http://www.thermofisher.com/global/en/home.asp" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/ThermoFisherScientific.jpg" alt=""></a></li>
 +
                    </ul>
 +
 
 +
                    <ul class="thumbnails">
 +
                        <li class="span3"><a href="http://eu.idtdna.com/site" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/IDT-Logo.jpg" alt=""></a></li>
 +
                       
 +
                        <li class="span3"><a href="http://www.delphigenetics.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/Delphi%20Genetics.jpg" alt=""></a></li>
 +
 
 +
                        <li class="span3"><a href="http://www.lgcstandards.com/" class="thumbnail"><img src="http://dl.dropbox.com/u/491730/iGEm/images/sponsors/LGC.jpg" alt=""></a></li>
 +
 
 +
                        <li class="span3"><a href="http://www.msd-uk.com/" class="thumbnail"><img src="https://static.igem.org/mediawiki/2012/b/b7/Msd.png" alt=""></a></li>
 +
 
 +
                    </ul>
 +
                </div>
 +
 
 +
                <div class="container">
 +
 
 +
                    <h1>iGEM</h1>
 +
 
 +
                    <p>The International Genetically Engineered Machine competition (iGEM) is the premier undergraduate synthetic biology competition. Student teams are given a kit of biological parts at the beginning of the summer from the Registry of Standard Biological Parts. Working at their own schools over the summer, they use these parts and new parts of their own design to build biological systems and operate them in living cells. This project design and competition format is an exceptionally motivating and effective teaching method.</p>
 +
                </div>
 +
            </div>
 +
 
 +
            <div class="span3">
 +
 
 +
<div class="alert alert-info">
 +
<a class="close" data-dismiss="alert" href="#">×</a>
 +
<h4 class="alert-heading">Offline project summaries</h4>
 +
These are the downloadable versions of our project summaries:
 +
<br>
 +
<br>
 +
<form action="http://dl.dropbox.com/u/491730/St%20Andrews%20iGEM%202012-%20Offline%20summaries.zip">
 +
<button type="submit" class="btn btn-info" href="http://dl.dropbox.com/u/491730/St%20Andrews%20iGEM%202012-%20Offline%20summaries.zip"></img>Download</button></form><!-- Wikitext kills our usual buttons, so here's a terrible hack with a form button -->
 +
 
 +
</div>
 +
 
 +
                <div>
 +
                    <h1>Twitter</h1><br>
 +
                </div>
 +
 
 +
                <div>
 +
                    <script charset="utf-8" src="http://widgets.twimg.com/j/2/widget.js" type="text/javascript">
 +
</script> <script type="text/javascript">
 +
new TWTR.Widget({
 +
                    version: 2,
 +
                    type: 'profile',
 +
                    rpp: 3,
 +
                    interval: 30000,
 +
                    width: 'auto',
 +
                    height: 300,
 +
                    theme: {
 +
                    shell: {
 +
                    background: '#ffffff',
 +
                    color: '#4f61bf'
 +
                    },
 +
                    tweets: {
 +
                    background: '#ffffff',
 +
                    color: '#000000',
 +
                    links: '#4f61bf'
 +
                    }
 +
                    },
 +
                    features: {
 +
                    scrollbar: false,
 +
                    loop: false,
 +
                    live: false,
 +
                    behavior: 'all'
 +
                    }
 +
                    }).render().setUser('StAndrewsiGEM12').start();
 +
                    </script>
 +
                </div>
 +
            </div>
 +
        </div>
 +
    </div>
 +
 
 +
 
 +
 
 +
 
 +
    </div>
 +
</body>
 +
</html>
 +
{{:Team:St_Andrews/Template:Footer}}

Latest revision as of 02:02, 23 October 2012

St Andrews iGEM '12

StA iGEM Wiki 2012 - Home

source

University of St Andrews' team for 2012 International Genetically Engineered Machine competition

Alternative omega-3 production and novel metal recovery methods

University of St Andrews coat of arms

Metal binding protein

BBa_K925002 BBa_K925004 BBa_K925005 BBa_K925006 BBa_K925007

Precious and toxic metals from car catalysts frequently find their way into the environment. By developing metal-binding proteins, we can reverse metal aggregation on our roads. This not only reduces the environmental impact of personal transportation, but will proffer a new man-made mine of precious metals.

ω−3 fatty acids synthesis

BBa_K925000 BBa_K925001 BBa_K925003

ω-3 fatty acid is a key component of the healthy human diet. The nutrient is only synthesized naturally in a handful of organisms (algae and oil-rich plants). Our team partially recreated the pathway for ω-3 production in E. coli using genes from the cyanobacteria Synechocystis, despite the difficulty of working with membrane-bound proteins. Until now, synthetic ω-3 production has only been achieved in plants.


Scientific impact of iGEM

We investigate the relationship between the iGEM competition and the rest of the scientific community. Is iGEM really having scientific impact? How often, how fairly and by whom are iGEM teams cited? Does the iGEM competition result in scholarly articles being published? What can guarantee continued recognition within the SynBio community?


The mathematics of ω-3

We modelled fish population dynamics. Our result: if we continue fishing in the current manner, by 2100, only a fraction of present day biomass will remain. Yet, there is hope. Indeed, realizing Team St Andrews' alternative production of omega-3 could be the measure necessary to save our seas. We investigated the effect that alternative production can have on future fish biomass, as well as the practicalities of preserving life in this manner.

Sponsors

iGEM

The International Genetically Engineered Machine competition (iGEM) is the premier undergraduate synthetic biology competition. Student teams are given a kit of biological parts at the beginning of the summer from the Registry of Standard Biological Parts. Working at their own schools over the summer, they use these parts and new parts of their own design to build biological systems and operate them in living cells. This project design and competition format is an exceptionally motivating and effective teaching method.

×

Offline project summaries

These are the downloadable versions of our project summaries:

Twitter


Back to top

University of St Andrews, 2012.

Contact us: igem2012@st-andrews.ac.uk, Twitter, Facebook

This iGEM team has been funded by the MSD Scottish Life Sciences Fund. The opinions expressed by this iGEM team are those of the team members and do not necessarily represent those of Merck Sharp & Dohme Limited, nor its Affiliates.

Retrieved from "http://2012.igem.org/Team:St_Andrews"