Team:SUSTC-Shenzhen-B

From 2012.igem.org

(Difference between revisions)
 
(23 intermediate revisions not shown)
Line 1: Line 1:
-
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" dir="ltr">
+
<html>
-
<head>
+
-
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+
-
<meta name="generator" content="MediaWiki 1.16.0" />
+
-
<link rel="alternate" type="application/x-wiki" title="Edit" href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=edit" />
+
-
<link rel="edit" title="Edit" href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=edit" />
+
-
<link rel="shortcut icon" href="/favicon.ico" />
+
-
<link rel="search" type="application/opensearchdescription+xml" href="/wiki/opensearch_desc.php" title="2012.igem.org (en)" />
+
-
<link title="Creative Commons" type="application/rdf+xml" href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=creativecommons" rel="meta" />
+
-
<link rel="copyright" href="http://creativecommons.org/licenses/by/3.0/" />
+
-
<link rel="alternate" type="application/atom+xml" title="2012.igem.org Atom feed" href="/wiki/index.php?title=Special:RecentChanges&amp;feed=atom" /> <title>Template:SUSTC-B1 - 2012.igem.org</title>
+
-
<style type="text/css" media="screen, projection">/*<![CDATA[*/
+
-
@import "/wiki/skins/common/shared.css?270";
+
-
@import "/wiki/skins/igem/main.css?270";
+
-
/*]]>*/</style>
+
-
<link rel="stylesheet" type="text/css" media="print" href="/wiki/skins/common/commonPrint.css?270" />
+
-
<!--[if lt IE 5.5000]><style type="text/css">@import "/wiki/skins/igem/IE50Fixes.css?270";</style><![endif]-->
+
-
<!--[if IE 5.5000]><style type="text/css">@import "/wiki/skins/igem/IE55Fixes.css?270";</style><![endif]-->
+
-
<!--[if IE 6]><style type="text/css">@import "/wiki/skins/igem/IE60Fixes.css?270";</style><![endif]-->
+
-
<!--[if IE 7]><style type="text/css">@import "/wiki/skins/igem/IE70Fixes.css?270";</style><![endif]-->
+
-
<!--[if lt IE 7]><script type="text/javascript" src="/wiki/skins/common/IEFixes.js?270"></script>
+
-
<meta http-equiv="imagetoolbar" content="no" /><![endif]-->
+
-
+
-
<script>
+
-
var skin="igem",
+
-
stylepath="/wiki/skins",
+
-
wgUrlProtocols="http\\:\\/\\/|https\\:\\/\\/|ftp\\:\\/\\/|irc\\:\\/\\/|gopher\\:\\/\\/|telnet\\:\\/\\/|nntp\\:\\/\\/|worldwind\\:\\/\\/|mailto\\:|news\\:|svn\\:\\/\\/",
+
-
wgArticlePath="/$1",
+
-
wgScriptPath="/wiki",
+
-
wgScriptExtension=".php",
+
-
wgScript="/wiki/index.php",
+
-
wgVariantArticlePath=false,
+
-
wgActionPaths={},
+
-
wgServer="https://2012.igem.org",
+
-
wgCanonicalNamespace="Template",
+
-
wgCanonicalSpecialPageName=false,
+
-
wgNamespaceNumber=10,
+
-
wgPageName="Template:SUSTC-B1",
+
-
wgTitle="SUSTC-B1",
+
-
wgAction="view",
+
-
wgArticleId=36371,
+
-
wgIsArticle=true,
+
-
wgUserName="Water",
+
-
wgUserGroups=["*", "user", "autoconfirmed"],
+
-
wgUserLanguage="en",
+
-
wgContentLanguage="en",
+
-
wgBreakFrames=false,
+
-
wgCurRevisionId=273676,
+
-
wgVersion="1.16.0",
+
-
wgEnableAPI=true,
+
-
wgEnableWriteAPI=true,
+
-
wgSeparatorTransformTable=["", ""],
+
-
wgDigitTransformTable=["", ""],
+
-
wgMainPageTitle="Main Page",
+
-
wgFormattedNamespaces={"-2": "Media", "-1": "Special", "0": "", "1": "Talk", "2": "User", "3": "User talk", "4": "2012.igem.org", "5": "2012.igem.org talk", "6": "File", "7": "File talk", "8": "MediaWiki", "9": "MediaWiki talk", "10": "Template", "11": "Template talk", "12": "Help", "13": "Help talk", "14": "Category", "15": "Category talk"},
+
-
wgNamespaceIds={"media": -2, "special": -1, "": 0, "talk": 1, "user": 2, "user_talk": 3, "2012.igem.org": 4, "2012.igem.org_talk": 5, "file": 6, "file_talk": 7, "mediawiki": 8, "mediawiki_talk": 9, "template": 10, "template_talk": 11, "help": 12, "help_talk": 13, "category": 14, "category_talk": 15, "image": 6, "image_talk": 7},
+
-
wgSiteName="2012.igem.org",
+
-
wgCategories=[],
+
-
wgMWSuggestTemplate="https://2012.igem.org/wiki/api.php?action=opensearch\x26search={searchTerms}\x26namespace={namespaces}\x26suggest",
+
-
wgDBname="2012_igem_org",
+
-
wgSearchNamespaces=[0],
+
-
wgMWSuggestMessages=["with suggestions", "no suggestions"],
+
-
wgRestrictionEdit=[],
+
-
wgRestrictionMove=[],
+
-
wgAjaxWatch={"watchMsg": "Watch", "unwatchMsg": "Unwatch", "watchingMsg": "Watching...", "unwatchingMsg": "Unwatching...", "tooltip-ca-watchMsg": "Add this page to your watchlist", "tooltip-ca-unwatchMsg": "Remove this page from your watchlist"};
+
-
</script>               
+
-
<script type="text/javascript" src="/wiki/skins/common/wikibits.js?270"><!-- wikibits js --></script>
+
-
<!-- Head Scripts -->
+
-
<script src="/wiki/skins/common/ajax.js?270"></script>
+
-
<script src="/wiki/skins/common/ajaxwatch.js?270"></script>
+
-
<script src="/wiki/skins/common/mwsuggest.js?270"></script>
+
-
<script type="text/javascript" src="/wiki/index.php?title=-&amp;action=raw&amp;smaxage=0&amp;gen=js&amp;useskin=igem"><!-- site js --></script>
+
-
<!-- jQuery Javascript -->
+
-
<script type='text/javascript'        src ='/common/jquery-latest.min.js'></script>
+
-
<script type='text/javascript'        src ='/common/tablesorter/jquery.tablesorter.min.js'></script>
+
-
        <link rel='stylesheet' type='text/css' href='/common/tablesorter/themes/groupparts/style.css' />
+
-
        <link rel='stylesheet' type='text/css' href='/common/table_styles.css' />
+
-
        <link rel='stylesheet' type='text/css' href='/forum/forum_styles.css' />
+
-
<script type='text/javascript'        src ='/forum/forum_scripts.js'></script>
+
-
</head>
+
-
 
+
-
<body              class="mediawiki  ltr ns-10 ns-subject page-Template_SUSTC-B1">
+
-
  <div id="globalWrapper">
+
-
 
+
-
    <div id="top-section">
+
-
<div id="p-logo">
+
-
    <a href="/Main_Page"
+
-
      title="Main Page">
+
-
    <img src='/wiki/skins/common/images/wiki.png'>"
+
-
    </a>
+
-
</div>  <!-- end p-logo -->
+
-
<script type="text/javascript"> if (window.isMSIE55) fixalpha(); </script>
+
-
 
+
-
 
+
-
 
+
-
<div id="menubar" class='left-menu noprint'>
+
-
  <ul>
+
-
                  <li
+
-
                class='selected'       ><a href="/Template:SUSTC-B1">Template              </a></li>
+
-
              <li
+
-
                class='new'       ><a href="/wiki/index.php?title=Template_talk:SUSTC-B1&amp;action=edit&amp;redlink=1">Discussion              </a></li>
+
-
              <li
+
-
                    ><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=edit">Edit              </a></li>
+
-
              <li
+
-
                    ><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=history">History              </a></li>
+
-
              <li
+
-
                    ><a href="/Special:MovePage/Template:SUSTC-B1">Move              </a></li>
+
-
              <li
+
-
                    ><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=watch">Watch              </a></li>
+
-
              <li style='color:#808080;cursor:default'>teams</li>
+
-
  </ul>
+
-
</div> <!-- end menubar (left) -->
+
-
 
+
-
<div class="right-menu noprint" id="menubar">
+
-
    <ul>
+
-
                <li id="pt-userpage"><a href="/User:Water" title="Your user page [.]" accesskey=".">Water</a></li>                              <li id='pt-preferences'><a href='https://igem.org/User_Information' title='My account'>My account</a></li>
+
-
                          <li id="pt-logout"><a href="/wiki/index.php?title=Special:UserLogout&amp;returnto=Template:SUSTC-B1" title="Log out">Log out</a></li>     </ul>
+
-
</div><!-- end right menubar -->
+
-
 
+
-
<div id="search-controls" class="noprint">
+
-
<form action="/Special:Search" id="searchform">
+
-
<input id="searchInput" name="search" type="text" title="Search 2012.igem.org [f]" accesskey="f" value="" />
+
-
<input type='submit' name="go" class="searchButton" id="searchGoButton" value="Go" title="Go to a page with this exact name if exists" />&nbsp;
+
-
      <input type='submit' name="fulltext" class="searchButton" id="mw-searchButton" value="Search" title="Search the pages for this text" />
+
-
</form>
+
-
</div> <!-- close search controls -->
+
-
    </div> <!-- close top-section-->
+
-
    <div id="content">
+
-
<a name="top" id="top"></a>
+
-
<h1 class="firstHeading">Template:SUSTC-B1</h1>
+
-
<div id="bodyContent">
+
-
<h3 id="siteSub" class='noprint'>From 2012.igem.org</h3>
+
-
<div id="contentSub"></div>
+
-
<!--
+
-
<div id="jump-to-nav">Jump to:                        <a href="#column-one">navigation</a>, <a href="#searchInput">search</a></div>-->
+
-
<!-- start content -->
+
-
<p>
+
<head>
<head>
<meta charset="utf-8" />
<meta charset="utf-8" />
Line 200: Line 64:
  */
  */
-
;(function($){
+
(function($){
$.fn.superfish = function(op){
$.fn.superfish = function(op){
Line 494: Line 358:
     img.src = pngurl;
     img.src = pngurl;
 +
}
}
Line 531: Line 396:
                         <ul id="topnav" class="sf-menu">
                         <ul id="topnav" class="sf-menu">
                             <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B">Home</a></li>
                             <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B">Home</a></li>
 +
                            <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/project.overview">project Overview</a></li>
                             <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Software</a>
                             <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Software</a>
                             <ul>
                             <ul>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Overview</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Overview</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/algorithm">Algorithm</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/algorithm">Algorithm</a></li>
-
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/achievements">Achievements</a></li>
+
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/achievements">Results</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Download">Download</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Download">Download</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/comment">Comment</a></li>
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/comment">Comment</a></li>
Line 560: Line 426:
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Contributions">Contributions</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Contributions">Contributions</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Acknowledgement">Acknowledgement</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Acknowledgement">Acknowledgement</a></li>
-
                                   <li><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=edit">Edit</a></li>
+
                                   <li><a href="/wiki/index.php?title=Team:SUSTC-Shenzhen-B&action=edit">Edit</a></li>
-
                                   <li><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=history">History</a></li>
+
                                   <li><a href="/wiki/index.php?title=Team:SUSTC-Shenzhen-B&action=history">History</a></li>
                               </ul>
                               </ul>
                             </li>
                             </li>
Line 570: Line 436:
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/august">August</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/august">August</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/September">September</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/September">September</a></li>
-
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/October">October</a></li>
+
                                    
                               </ul>
                               </ul>
                             </li>
                             </li>
Line 579: Line 445:
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/high.school.visits">High School Visits</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/high.school.visits">High School Visits</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/SynBio.intro">SynBio Intro</a></li>
                                   <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/SynBio.intro">SynBio Intro</a></li>
-
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/October">October</a></li>
 
                               </ul>
                               </ul>
                             </li>
                             </li>
Line 585: Line 450:
                     </nav><!-- nav -->
                     </nav><!-- nav -->
                      
                      
-
                    <ul id="sn">
 
-
                    <li><a href="http://twitter.com" title="Twitter"><span class="icon-img" style="background:url(/wiki/images/1/1a/Sustc-b1-social-twitter.png)"></span></a></li>
 
-
                        <li><a href="http://plus.google.com" title="Google+"><span class="icon-img" style="background:url(/wiki/images/7/70/Sustc-b1-social-google.png)"></span></a></li>
 
-
                        <li><a href="http://facebook.com" title="Facebook"><span class="icon-img" style="background:url(/wiki/images/a/a7/Sustc-b1-social-facebook.png)"></span></a></li>
 
-
                        <li><a href="http://pinterest.com" title="pinterest"><span class="icon-img" style="background:url(/wiki/images/b/bb/Sustc-b1-social-pinterest.png)"></span></a></li>
 
-
                    </ul>
 
                     <div class="clear"></div>
                     <div class="clear"></div>
                 </section>
                 </section>
 +
<div class="nav-shadow"></div>
 +
<div id="logo" class="frontpage"><a href="#"><img src="https://static.igem.org/mediawiki/2012/3/3a/Tihuan.JPG" alt=""</a></div>
 +
<div class="clear"></div>
             </header>
             </header>
         </div>
         </div>
         <!-- END HEADER -->
         <!-- END HEADER -->
-
      <br><br> 
 
         <!-- SLIDER -->
         <!-- SLIDER -->
         <div id="outerslider">
         <div id="outerslider">
Line 616: Line 477:
                           </div>
                           </div>
                           <div class="bigimg">
                           <div class="bigimg">
-
                               <img src="https://static.igem.org/mediawiki/2012/0/05/Slider.4.JPG" alt="" class="change" />
+
                               <img src="https://static.igem.org/mediawiki/2012/a/a3/Sustc-lab.JPG" alt="" class="change" />
                               <div class="slidedesc">Lab Work.</div>
                               <div class="slidedesc">Lab Work.</div>
                           </div>
                           </div>
                           <div class="bigimg">
                           <div class="bigimg">
-
                               <img src="https://static.igem.org/mediawiki/2012/1/17/Slider.5.JPG" alt="" class="change" />
+
                               <img src="https://static.igem.org/mediawiki/2012/a/ab/Hupra-3.JPG" alt="" class="change" />
                               <div class="slidedesc">Human Practice.</div>  
                               <div class="slidedesc">Human Practice.</div>  
                           </div>
                           </div>
Line 644: Line 505:
<article>
<article>
                                 <h1>Transcriptional Terminator Efficiency Calculator (TTEC)</h1>
                                 <h1>Transcriptional Terminator Efficiency Calculator (TTEC)</h1>
-
<p>We studied the rho-independent transcription terminators which regulate gene expression using both theoretical model and experiment method.</p>
+
<p><b>Welcome!!</b></p>
-
<p> We first developed a theoretical model. This model calculated the free energy of RNA folding and could predict the secondary structure of terminators. From the secondary structure, we proposed an algorithm that can predict terminator efficiency.</p>
+
<p>We are sophomores at SUSTC. During this summer, we studied the efficiency of rho-independent  
-
<p> To validate our theoretical prediction, we also perform wetlab experiments. We construct 100 terminators. We measure the the terminator efficiency by measuring the GFP and RFP which are placed before and after terminators.</p>
+
transcription terminators using both  
-
<p> We also developed a software and a web server for people to calculate their terminators and built a database of terminator efficiency which we believe to be the largest database of such kind. Our work is by far the most comprehensive study on terminator efficiency.</p>
+
theoretical modeling
 +
and  
 +
experimental methods.  
 +
Here is the
 +
<a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/project.overview">overview </a>
 +
of our project.
 +
</p>
 +
 
 +
 
                 </article>
                 </article>

Latest revision as of 03:19, 27 October 2012

Title

Transcriptional Terminator Efficiency Calculator (TTEC)

Welcome!!

We are sophomores at SUSTC. During this summer, we studied the efficiency of rho-independent transcription terminators using both theoretical modeling and experimental methods. Here is the overview of our project.

South University of Science and Technology of China

Retrieved from "https://2012.igem.org/Template:SUSTC-B1"

Retrieved from "http://2012.igem.org/Team:SUSTC-Shenzhen-B"