Team:UT Dallas/notebook data

From 2012.igem.org

(Difference between revisions)
 
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     June 6
     June 6
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 27: Line 27:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     June 7
     June 7
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked and glycerol stocked made
     Colonies picked and glycerol stocked made
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 54: Line 54:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page3" class='notebook_page'>
<div id="page3" class='notebook_page'>
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     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     June 8
     June 8
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 95: Line 95:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page4" class='notebook_page'>
<div id="page4" class='notebook_page'>
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     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     June 11
     June 11
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 125: Line 125:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     June 12
     June 12
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 146: Line 146:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 161: Line 161:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page5" class='notebook_page'>
<div id="page5" class='notebook_page'>
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     June 13
     June 13
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Incubate constitutive promoter-RBS-GFP in LB carb broth overnight @ 37*C and 220 rpm
     Incubate constitutive promoter-RBS-GFP in LB carb broth overnight @ 37*C and 220 rpm
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 177: Line 177:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     June 14
     June 14
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stock and miniprep
     Glycerol stock and miniprep
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 206: Line 206:
     Test Digestion for each plasmid: correct results received
     Test Digestion for each plasmid: correct results received
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     June 15
     June 15
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         prom-RBS-GFP: Concentration: 127 ng/μl
+
         prom-RBS-GFP: Concentration: 127 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page6" class='notebook_page'>
<div id="page6" class='notebook_page'>
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     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 16
     July 16
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformations
     Transformations
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 255: Line 255:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 17
     July 17
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 301: Line 301:
<div id="page7" class='notebook_page'>
<div id="page7" class='notebook_page'>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 18
     July 18
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stocks made
     Glycerol stocks made
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 320: Line 320:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 236.2 ng/μl
+
             Concentration: 236.2 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 328: Line 328:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 92.9 ng/μl
+
             Concentration: 92.9 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 336: Line 336:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 60.6 ng/μl
+
             Concentration: 60.6 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 344: Line 344:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 110.9 ng/μl
+
             Concentration: 110.9 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 351: Line 351:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 366: Line 366:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page8" class='notebook_page'>
<div id="page8" class='notebook_page'>
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     Gel Extraction
     Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 380: Line 380:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 10.8 ng/μl
+
             Concentration: 10.8 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 388: Line 388:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 19.6 ng/μl
+
             Concentration: 19.6 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 396: Line 396:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration: 6.2 ng/μl
+
             Concentration: 6.2 ng/µl
         </li>
         </li>
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 413: Line 413:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 434: Line 434:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page9" class='notebook_page'>
<div id="page9" class='notebook_page'>
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     July 19
     July 19
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformations
     Transformations
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 470: Line 470:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     July 20
     July 20
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 508: Line 508:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     July 20
     July 20
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stocks &amp; plasmid isolation
     Glycerol stocks &amp; plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 527: Line 527:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 537: Line 537:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Gel Extraction
     Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLac-TetR: Concentration: 20.5 ng/μl
+
         pLac-TetR: Concentration: 20.5 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 550: Line 550:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 562: Line 562:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 580: Line 580:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 20
     July 20
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Repeat Transformation
     Repeat Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 609: Line 609:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 21
     July 21
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 636: Line 636:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 655: Line 655:
     Digestion &amp; Gel Extraction
     Digestion &amp; Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 661: Line 661:
     </li>
     </li>
     <li>
     <li>
-
         LuxR: Concentration: 11.1 ng/μl
+
         LuxR: Concentration: 11.1 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LuxI: Concentration: 7.1 ng/μl
+
         LuxI: Concentration: 7.1 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page13" class='notebook_page'>
<div id="page13" class='notebook_page'>
Line 674: Line 674:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
Line 680: Line 680:
     July 22
     July 22
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LuxS: Concentration: 75.2 ng/μl
+
         LuxS: Concentration: 75.2 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LasI: Concentration: 90.1 ng/μl
+
         LasI: Concentration: 90.1 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         RBS-YFP: Concentration: 76.4 ng/μl
+
         RBS-YFP: Concentration: 76.4 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 23
     July 23
</p>
</p>
-
<br/>
+
 
<p>
<p>
     DIgestion and gel extraction
     DIgestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 717: Line 717:
     </li>
     </li>
     <li>
     <li>
-
         LasI (E/S) Concentration: 20.3 ng/μl
+
         LasI (E/S) Concentration: 20.3 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         RBS-YFP (X/P) Concentration: 18.2 ng/μl
+
         RBS-YFP (X/P) Concentration: 18.2 ng/µl
     </li>
     </li>
     <li>
     <li>
Line 729: Line 729:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 741: Line 741:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 760: Line 760:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 772: Line 772:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     July 23
     July 23
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stock and plasmid isolation
     Glycerol stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 791: Line 791:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 803: Line 803:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 824: Line 824:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 24
     July 24
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LuxS: Concentration: 85.9 ng/μl
+
         LuxS: Concentration: 85.9 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LuxI: Concentration:85.7 ng/μl
+
         LuxI: Concentration:85.7 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LasI: Concentration: 224.1 ng/μl
+
         LasI: Concentration: 224.1 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 847: Line 847:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LuxI (S/P): Concentration: 25.5 ng/μl
+
         LuxI (S/P): Concentration: 25.5 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LasI (S/P): Concentration: 30.7 ng/μl
+
         LasI (S/P): Concentration: 30.7 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 859: Line 859:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 874: Line 874:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
Line 882: Line 882:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 24
     July 24
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 906: Line 906:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 25
     July 25
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 930: Line 930:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 945: Line 945:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLsrA (S/P): Concentration: 20.6 ng/μl
+
         pLsrA (S/P): Concentration: 20.6 ng/µl
     </li>
     </li>
Line 955: Line 955:
     <li>
     <li>
-
         pLuxR (S/P): Concentration: 18.7 ng/μl
+
         pLuxR (S/P): Concentration: 18.7 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 961: Line 961:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 973: Line 973:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 25
     July 25
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and plasmid isolation
     Glycerol Stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 992: Line 992:
     <ul>
     <ul>
         <li>
         <li>
-
             Concentration 1: 194.8 ng/μl
+
             Concentration 1: 194.8 ng/µl
         </li>
         </li>
         <li>
         <li>
-
             Concentartion 2: 117.2 ng/μl
+
             Concentartion 2: 117.2 ng/µl
         </li>
         </li>
     </ul>
     </ul>
Line 1,002: Line 1,002:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,015: Line 1,015:
</ul>
</ul>
<p>
<p>
-
     Tetracycle Stock: 50 ng/чl
+
     Tetracycle Stock: 50 ng/?l
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page18" class='notebook_page'>
<div id="page18" class='notebook_page'>
<p>
<p>
-
     IPTG stock: 50 ng/чl
+
     IPTG stock: 50 ng/?l
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 26
     July 26
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,052: Line 1,052:
     Glycerol stock and plasmid isolation
     Glycerol stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LuxI-RBS-YFP: Concentration: 70.8 ng/μl
+
         LuxI-RBS-YFP: Concentration: 70.8 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LasI-RBS-RFP: Concentration: 4.0 (to be repeated) ng/μl
+
         LasI-RBS-RFP: Concentration: 4.0 (to be repeated) ng/µl
     </li>
     </li>
</ul>
</ul>
Line 1,064: Line 1,064:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,070: Line 1,070:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 26
     July 26
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,095: Line 1,095:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 27
     July 27
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stock and plasmid isolation
     Glycerol stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pTetR: Concentration: 42.4 ng/μl
+
         pTetR: Concentration: 42.4 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         pLasR: Concentration: 62.2 ng/μl
+
         pLasR: Concentration: 62.2 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LuxI-RBS-YFP: Concentration: 120.9 ng/μl
+
         LuxI-RBS-YFP: Concentration: 120.9 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LasI-RBS-RFP: Concentration: 85 ng/μl
+
         LasI-RBS-RFP: Concentration: 85 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 1,129: Line 1,129:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pTetR (S/P): Concentration: 17.4 ng/μl
+
         pTetR (S/P): Concentration: 17.4 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         pLasR (S/P): Concentration: 23.8 ng/μl
+
         pLasR (S/P): Concentration: 23.8 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LuxI-RBS-YFP (X/P): Concentration: 13.8 ng/μl
+
         LuxI-RBS-YFP (X/P): Concentration: 13.8 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LasI-RBS-RFP (X/P): Concentration: 8.9 ng/μl
+
         LasI-RBS-RFP (X/P): Concentration: 8.9 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 1,150: Line 1,150:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,172: Line 1,172:
     Transformation:
     Transformation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,181: Line 1,181:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,187: Line 1,187:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 27
     July 27
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,213: Line 1,213:
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LasR: Concentration: 95.8 ng/μl
+
         LasR: Concentration: 95.8 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         Term-Term: Concentration: 120.1 ng/μl
+
         Term-Term: Concentration: 120.1 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 1,225: Line 1,225:
     Toggle switch test
     Toggle switch test
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,240: Line 1,240:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 28
     July 28
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,265: Line 1,265:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 28
     July 28
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stock and plasmid isolation
     Glycerol stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LacI: Concentration: 73.9 ng/μl
+
         LacI: Concentration: 73.9 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         LacI (2): Concentration: 109.8 ng/μl
+
         LacI (2): Concentration: 109.8 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page22" class='notebook_page'>
<div id="page22" class='notebook_page'>
Line 1,294: Line 1,294:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 29
     July 29
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stocks
     Glycerol Stocks
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/μl
+
         pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/μl
+
         pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         RBS-CFP: Concentration: 84.0 ng/μl
+
         RBS-CFP: Concentration: 84.0 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 30
     July 30
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/μl
+
         pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/μl
+
         pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         RBS-CFP: Concentration: 84.0 ng/μl
+
         RBS-CFP: Concentration: 84.0 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 1,341: Line 1,341:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,350: Line 1,350:
     </li>
     </li>
     <li>
     <li>
-
         RBS-CFP (X/P): Concentration: 10.4 ng/μl
+
         RBS-CFP (X/P): Concentration: 10.4 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         pLac-LuxR (S/P): Concentration: 21.0 ng/μl
+
         pLac-LuxR (S/P): Concentration: 21.0 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
</div>
</div>
Line 1,376: Line 1,376:
     Ligation and transformation:
     Ligation and transformation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,388: Line 1,388:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 30
     July 30
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Experiment 7
     Experiment 7
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         150 ng/чl Tet
+
         150 ng/?l Tet
     </li>
     </li>
     <li>
     <li>
-
         200 ng/чl Tet
+
         200 ng/?l Tet
     </li>
     </li>
     <li>
     <li>
-
         300 ng/чl Tet
+
         300 ng/?l Tet
     </li>
     </li>
     <li>
     <li>
Line 1,423: Line 1,423:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,432: Line 1,432:
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 31
     July 31
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LuxS: Concentration: 78.1 ng/μl
+
         LuxS: Concentration: 78.1 ng/µl
     </li>
     </li>
     <li>
     <li>
-
         pLuxR-LasI-RBS-RFP: Concentration: 48.7 ng/μl
+
         pLuxR-LasI-RBS-RFP: Concentration: 48.7 ng/µl
     </li>
     </li>
</ul>
</ul>
Line 1,456: Line 1,456:
     Digestion:
     Digestion:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,462: Line 1,462:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,468: Line 1,468:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Test Digestion:
     Test Digestion:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,478: Line 1,478:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,484: Line 1,484:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Colonies:
     Colonies:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,494: Line 1,494:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,500: Line 1,500:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page25" class='notebook_page'>
<div id="page25" class='notebook_page'>
Line 1,508: Line 1,508:
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     July 31
     July 31
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation:
     Plasmid Isolation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         GFP: 137.5 ng/μl
+
         GFP: 137.5 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     August 1, 2012:
     August 1, 2012:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation:
     Plasmid Isolation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLuxR-LasI-RBS-RFP: 61.2 ng/μl
+
         pLuxR-LasI-RBS-RFP: 61.2 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLasR-RBS-CFP: 49.2 ng/μl
+
         pLasR-RBS-CFP: 49.2 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion:
     Digestion:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,555: Line 1,555:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,561: Line 1,561:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,567: Line 1,567:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,573: Line 1,573:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Gel Exraction:
     Gel Exraction:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         GFP: 8.5 ng/μl
+
         GFP: 8.5 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LacI: 12.7 ng/μl
+
         LacI: 12.7 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
Line 1,596: Line 1,596:
     Colony:
     Colony:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,602: Line 1,602:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Transformation:
     Transformation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,612: Line 1,612:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,618: Line 1,618:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 1
     August 1
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation:
     Ligation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,638: Line 1,638:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,644: Line 1,644:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,650: Line 1,650:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Transformation:
     Transformation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,660: Line 1,660:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,666: Line 1,666:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,672: Line 1,672:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page27" class='notebook_page'>
<div id="page27" class='notebook_page'>
Line 1,681: Line 1,681:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 2, 2012:
     August 2, 2012:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies:
     Colonies:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,695: Line 1,695:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,701: Line 1,701:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation:
     Plasmid Isolation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LuxS: Concentration – 40.5 ng/μl
+
         LuxS: Concentration – 40.5 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLasR-CFP: 95.8 ng/μl
+
         pLasR-CFP: 95.8 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Digestion:
     Digestion:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,727: Line 1,727:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,733: Line 1,733:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,739: Line 1,739:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,745: Line 1,745:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Gel Extraction:
     Gel Extraction:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LasI: Concentration – 4.1 ng/μl
+
         LasI: Concentration – 4.1 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         LasR: Concentration – 5.3 ng/μl
+
         LasR: Concentration – 5.3 ng/µl
     </li>
     </li>
Line 1,764: Line 1,764:
<div id="page28" class='notebook_page'>
<div id="page28" class='notebook_page'>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLasR-RBS-CFP – 13.4 ng/μl
+
         pLasR-RBS-CFP – 13.4 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Ligation:
     Ligation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,780: Line 1,780:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,786: Line 1,786:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,792: Line 1,792:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 2
     August 2
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies:
     Colonies:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,812: Line 1,812:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,818: Line 1,818:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,824: Line 1,824:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 3, 2012:
     August 3, 2012:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stocks/Miniprep:
     Glycerol Stocks/Miniprep:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pTet-GFP: Concentration-142.2 ng/μl
+
         pTet-GFP: Concentration-142.2 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pTet-LacI: Concentration-67.2 ng/μl
+
         pTet-LacI: Concentration-67.2 ng/µl
     </li>
     </li>
</div>
</div>
Line 1,854: Line 1,854:
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLac-GFP: Concentration-50.5 ng/μl
+
         pLac-GFP: Concentration-50.5 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Digestion:
     Digestion:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,870: Line 1,870:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,876: Line 1,876:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,882: Line 1,882:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,888: Line 1,888:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 3
     August 3
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation:
     Ligation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,907: Line 1,907:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,913: Line 1,913:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,919: Line 1,919:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Ligation:
     Ligation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,929: Line 1,929:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,935: Line 1,935:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,941: Line 1,941:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page30" class='notebook_page'>
<div id="page30" class='notebook_page'>
Line 1,948: Line 1,948:
     Glycerol Stock:
     Glycerol Stock:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pLuxR-LasI-RBS-RFP: Concentration – 45.1 ng/μl
+
         pLuxR-LasI-RBS-RFP: Concentration – 45.1 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
-
         pTetR-LuxI: Concentration – 105.1 ng/μl
+
         pTetR-LuxI: Concentration – 105.1 ng/µl
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Digestion:
     Digestion:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,970: Line 1,970:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Ligation:
     Ligation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,986: Line 1,986:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 1,995: Line 1,995:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 4
     August 4
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,016: Line 2,016:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
Line 2,027: Line 2,027:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 5
     August 5
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,050: Line 2,050:
     Transformation (repeated)
     Transformation (repeated)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,056: Line 2,056:
     </li>
     </li>
     <li>
     <li>
-
         <br/>
+
          
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 6
     August 6
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,080: Line 2,080:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,090: Line 2,090:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,109: Line 2,109:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Digestion and gel extraction (improperly prepared for gel)
     Digestion and gel extraction (improperly prepared for gel)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,125: Line 2,125:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,141: Line 2,141:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 6, 2012:
     August 6, 2012:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     PCR:
     PCR:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA created
     RFP-LVA created
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Experiments:
     Experiments:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Test mechanism shows TetR and LacI are medium strength repressors.
     Test mechanism shows TetR and LacI are medium strength repressors.
Line 2,171: Line 2,171:
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     Toggle Experiment fails to show significant changes in fluorescence protein after 2 or 6 hours.
     Toggle Experiment fails to show significant changes in fluorescence protein after 2 or 6 hours.
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 7
     August 7
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,197: Line 2,197:
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,218: Line 2,218:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,239: Line 2,239:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,254: Line 2,254:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,267: Line 2,267:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 7, 2012
     August 7, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Miniprep
     Glycerol Stock/Miniprep
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-GFP
     pLac-GFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion &amp; Gel Extraction
     Digestion &amp; Gel Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI: XbaI and PstI
     pTet-LacI: XbaI and PstI
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page35" class='notebook_page'>
<div id="page35" class='notebook_page'>
Line 2,305: Line 2,305:
     pLac-GFP: SpeI and PstI
     pLac-GFP: SpeI and PstI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation/Transformation
     Ligation/Transformation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Vector: pLac-GFP
     Vector: pLac-GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Insert: pTet-LacI
     Insert: pTet-LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 8
     August 8
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,347: Line 2,347:
     Repeat transformations from ligation
     Repeat transformations from ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,356: Line 2,356:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 8, 2012
     August 8, 2012
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Transformations:
     Transformations:
Line 2,374: Line 2,374:
<div id="page36" class='notebook_page'>
<div id="page36" class='notebook_page'>
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Negative control had ~20 colonies
     Negative control had ~20 colonies
</p>
</p>
-
<br/>
+
 
<p>
<p>
     2:1 sample had ~ 40 colonies, we picked 2
     2:1 sample had ~ 40 colonies, we picked 2
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Positive had too many colonies to count
     Positive had too many colonies to count
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     PCR Reaction (Gradient)
     PCR Reaction (Gradient)
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     -55, 60, and 65 degrees
     -55, 60, and 65 degrees
Line 2,398: Line 2,398:
     -55 degrees found to be most ideal
     -55 degrees found to be most ideal
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Gel Extraction (of PCR)
     Gel Extraction (of PCR)
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     Poor results, no DNA extracted
     Poor results, no DNA extracted
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plate test for toggle switch:
     Plate test for toggle switch:
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     1 tube inoculated with IPTG 10 microliters of .2mM solution
     1 tube inoculated with IPTG 10 microliters of .2mM solution
Line 2,417: Line 2,417:
     1 tube inoculated with ATC 10 microliters of 20ng/microliter
     1 tube inoculated with ATC 10 microliters of 20ng/microliter
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 9
     August 9
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stocks
     Glycerol stocks
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,447: Line 2,447:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,459: Line 2,459:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,465: Line 2,465:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,477: Line 2,477:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,483: Line 2,483:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,489: Line 2,489:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,501: Line 2,501:
     Gel Extraction
     Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,507: Line 2,507:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,516: Line 2,516:
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,528: Line 2,528:
     Innoculation: pLac-LuxR-pLuxR-LasI-RBS-RFP
     Innoculation: pLac-LuxR-pLuxR-LasI-RBS-RFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 9, 2012
     August 9, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol stock/miniprep:
     Glycerol stock/miniprep:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-GFP-ST-pTet-LacI
     pLac-GFP-ST-pTet-LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     PCR Reaction
     PCR Reaction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Experiment: Repressor Test Mechanism (LacI)
     Experiment: Repressor Test Mechanism (LacI)
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 - Induced 10microliters of 10mM IPTG
     1 - Induced 10microliters of 10mM IPTG
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 - No induction
     1 - No induction
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion and Gel Extraction:
     Digestion and Gel Extraction:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA: XbaI and PstI
     RFP-LVA: XbaI and PstI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ampicillin Backbone: SpeI and PstI
     Ampicillin Backbone: SpeI and PstI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
Line 2,590: Line 2,590:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 10
     August 10
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,607: Line 2,607:
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,616: Line 2,616:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,625: Line 2,625:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,643: Line 2,643:
     Transformation:
     Transformation:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,655: Line 2,655:
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 10, 2012
     August 10, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation/Transformation
     Ligation/Transformation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA into Ampicillin backbone
     RFP-LVA into Ampicillin backbone
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations:
     Inoculations:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle
     Toggle
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas
     pLas
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI
     LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR
     LuxR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet
     pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLux
     pLux
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxI
     LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     August 11, 2012
     August 11, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid isolation
     Plasmid isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle
     Toggle
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas
     pLas
Line 2,724: Line 2,724:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI
     LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR
     LuxR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet
     pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLux
     pLux
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxI
     LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR: X and P
     LuxR: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLux: S and P
     pLux: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxI: S and P
     LuxI: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasR: X and P
     LasR: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Double Terminators (DT): X and P
     Double Terminators (DT): X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI: X and P
     LasI: X and P
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 11
     August 11
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,797: Line 2,797:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
Line 2,804: Line 2,804:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 12
     August 12
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid isolation
     Glycerol Stock and Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,824: Line 2,824:
     Transformation repeat
     Transformation repeat
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,833: Line 2,833:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,845: Line 2,845:
     Gel Extraction
     Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,857: Line 2,857:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,876: Line 2,876:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 13
     August 13
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,897: Line 2,897:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 13, 2012
     August 13, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Miniprep/Glycerol Stock
     Miniprep/Glycerol Stock
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestions/Extraction
     Digestions/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas: S and P
     pLas: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI: X and P
     LacI: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA: E and P
     RFP-LVA: E and P
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
Line 2,939: Line 2,939:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone
     Chlorabackbone
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
<p>
<p>
     DT
     DT
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 14
     August 14
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid isolation
     Glycerol Stock and Plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,976: Line 2,976:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 2,985: Line 2,985:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Parts Recieved
     Parts Recieved
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,010: Line 3,010:
     Streaking
     Streaking
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,019: Line 3,019:
     Ligation repeat
     Ligation repeat
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,034: Line 3,034:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 14, 2012
     August 14, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Miniprep/Glycerol Stock
     Miniprep/Glycerol Stock
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone
     Chlorabackbone
</p>
</p>
-
<br/>
+
 
<p>
<p>
     DT
     DT
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction:
     Digestion/Extraction:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     DT: X and P
     DT: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone: E and P
     Chlorabackbone: E and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle: E and P
     Toggle: E and P
Line 3,075: Line 3,075:
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation/Transformation:
     Ligation/Transformation:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     DT into LuxR
     DT into LuxR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     TetR into pLux
     TetR into pLux
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI into pTet
     LasI into pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasR into DT
     LasR into DT
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas into LacI
     pLas into LacI
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pLac into LuxI
     pLac into LuxI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 15
     August 15
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,125: Line 3,125:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,137: Line 3,137:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,150: Line 3,150:
     Testing
     Testing
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,184: Line 3,184:
     Streaking
     Streaking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     BBa_K091109
     BBa_K091109
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,197: Line 3,197:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 15, 2012
     August 15, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page47" class='notebook_page'>
<div id="page47" class='notebook_page'>
Line 3,215: Line 3,215:
     LuxR-DT: 15 colonies, picked 1 colony
     LuxR-DT: 15 colonies, picked 1 colony
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLux-TetR: 35 colonies, picked 1
     pLux-TetR: 35 colonies, picked 1
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasI: Negative control growth; unsuccessful
     pTet-LasI: Negative control growth; unsuccessful
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasR-DT: 25 colonies, picked 1
     LasR-DT: 25 colonies, picked 1
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI: 0 growth
     pLas-LacI: 0 growth
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxI: 15 colonies, picked 1
     pLac-LuxI: 15 colonies, picked 1
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI into pTet
     LasI into pTet
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasI
     pTet-LasI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI
     pLas-LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone
     Chlorabackbone
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 16
     August 16
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies
     Colonies
Line 3,282: Line 3,282:
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,291: Line 3,291:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,309: Line 3,309:
     Glycerol Stock and plasmid isolation
     Glycerol Stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,324: Line 3,324:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,345: Line 3,345:
     Testing
     Testing
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,414: Line 3,414:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,435: Line 3,435:
     Gel Extraction
     Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,447: Line 3,447:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,453: Line 3,453:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
Line 3,460: Line 3,460:
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 16, 2012
     August 16, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Miniprep/Glycerol Stock
     Miniprep/Glycerol Stock
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT
     LuxR-DT
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLux-TetR
     pLux-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasR-DT
     LasR-DT
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacI
     pLac-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone
     Chlorabackbone
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Transformation Results
     Transformation Results
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Negative controls had too much growth; results thrown out
     Negative controls had too much growth; results thrown out
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT: S and P
     LuxR-DT: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLux-TetR: X and P
     pLux-TetR: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone: E and P
     Chlorabackbone: E and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligations/Transformation
     Ligations/Transformation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT and pLux-TetR
     LuxR-DT and pLux-TetR
Line 3,524: Line 3,524:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone with Toggle Switch
     Chlorabackbone with Toggle Switch
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 17
     August 17
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,556: Line 3,556:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,574: Line 3,574:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,595: Line 3,595:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,631: Line 3,631:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,646: Line 3,646:
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 17, 2012
     August 17, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas with LacI
     pLas with LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet with LasI
     pTet with LasI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas
     pLas
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI
     LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet
     pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac
     pLac
</p>
</p>
-
<br/>
+
 
<p>
<p>
     GFP
     GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI
     LasI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Bba_K081014 Kit Plate 3 Well 12O Resistance AK; RFP
     Bba_K081014 Kit Plate 3 Well 12O Resistance AK; RFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page55" class='notebook_page'>
<div id="page55" class='notebook_page'>
Line 3,718: Line 3,718:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 18
     August 18
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Innoculations
     Innoculations
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,741: Line 3,741:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 18, 2012
     August 18, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colony Picking
     Colony Picking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT-pLux-TetR: 30 colonies, 1 picked
     LuxR-DT-pLux-TetR: 30 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle Switch in Chlorabackbone: 4 colonies, 1 picked
     Toggle Switch in Chlorabackbone: 4 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas with LacI: negative control growth; results thrown out
     pLas with LacI: negative control growth; results thrown out
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet with LasI: negative control growth; results thrown out
     pTet with LasI: negative control growth; results thrown out
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     RFP: 20 colonies, 1 picked
     RFP: 20 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page56" class='notebook_page'>
<div id="page56" class='notebook_page'>
Line 3,784: Line 3,784:
     LuxR-DT-pLux-TetR
     LuxR-DT-pLux-TetR
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Minipreps
     Minipreps
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT-pLux-TetR
     LuxR-DT-pLux-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas
     pLas
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI
     LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet
     pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac
     pLac
</p>
</p>
-
<br/>
+
 
<p>
<p>
     GFP
     GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI
     LasI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page57" class='notebook_page'>
<div id="page57" class='notebook_page'>
Line 3,829: Line 3,829:
     August 19
     August 19
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stocks
     Glycerol Stocks
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,863: Line 3,863:
     Oscillator Population Tests (population with induction plasmid)
     Oscillator Population Tests (population with induction plasmid)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,890: Line 3,890:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,920: Line 3,920:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 3,956: Line 3,956:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,004: Line 4,004:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 19, 2012
     August 19, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Plasmid Isolation
     Glycerol Stock/Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP
     RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle Switch in Chlorabackbone
     Toggle Switch in Chlorabackbone
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculation
     Inoculation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac: S and P
     pLac: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT-pLux-TetR: X and P
     LuxR-DT-pLux-TetR: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet: S and P
     pTet: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI: X and P
     LasI: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasR-DT: X and P
     LasR-DT: X and P
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page61" class='notebook_page'>
<div id="page61" class='notebook_page'>
Line 4,065: Line 4,065:
     LacI: S and P
     LacI: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP: X and P
     RFP: X and P
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 20
     August 20
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,109: Line 4,109:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,134: Line 4,134:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 20, 2012
     August 20, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligations/Transformations
     Ligations/Transformations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LuxR-DT-pLux-TetR into pLac
     LuxR-DT-pLux-TetR into pLac
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasI into pTet
     LasI into pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LasR-DT into pTet
     LasR-DT into pTet
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP into LacI
     RFP into LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 21
     August 21
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and plasmid isolation
     Glycerol Stock and plasmid isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,206: Line 4,206:
     Digestion and gel extraction
     Digestion and gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,236: Line 4,236:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,245: Line 4,245:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,263: Line 4,263:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 21, 2012
     August 21, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colony Pickings
     Colony Pickings
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxR-DT-pLux-TetR: 24 colonies, 1 picked
     pLac-LuxR-DT-pLux-TetR: 24 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasI: 30 colonies, 3 picked
     pTet-LasI: 30 colonies, 3 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT: 100 colonies, 2 picked
     pTet-LasR-DT: 100 colonies, 2 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP: 24 colonies, 2 picked
     LacI-RFP: 24 colonies, 2 picked
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 22
     August 22
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Digestion (test)
     Digestion (test)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,339: Line 4,339:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,348: Line 4,348:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,363: Line 4,363:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,372: Line 4,372:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,385: Line 4,385:
     Population Testing Prep (pop2, pop3, pop2+pop3)
     Population Testing Prep (pop2, pop3, pop2+pop3)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,408: Line 4,408:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 22, 2012
     August 22, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Miniprep
     Glycerol Stock/Miniprep
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxR-DT-pLux-TetR
     pLac-LuxR-DT-pLux-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasI
     pTet-LasI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT
     pTet-LasR-DT
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP
     LacI-RFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction:
     Digestion/Extraction:
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxR-DT-pLux-TetR: S and P
     pLac-LuxR-DT-pLux-TetR: S and P
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page67" class='notebook_page'>
<div id="page67" class='notebook_page'>
Line 4,452: Line 4,452:
     GFP: X and P
     GFP: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP: S and P
     LacI-RFP: S and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxI: X and P
     pLac-LuxI: X and P
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Test Digestions
     Test Digestions
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-LasI: E and P
     pTet-LasI: E and P
Line 4,471: Line 4,471:
     pTet-LasR-DT: E and P
     pTet-LasR-DT: E and P
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligations/Transformations
     Ligations/Transformations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     GFP into pLac-LuxR-DT-pLux-TetR
     GFP into pLac-LuxR-DT-pLux-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxI into LacI-RFP
     pLac-LuxI into LacI-RFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-GFP
     pTet-GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RBS-YFP
     RBS-YFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     August 22
     August 22
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Digestion (test)
     Digestion (test)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,545: Line 4,545:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,554: Line 4,554:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,569: Line 4,569:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,578: Line 4,578:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page69" class='notebook_page'>
<div id="page69" class='notebook_page'>
Line 4,590: Line 4,590:
     Population Testing Prep (pop2, pop3, pop2+pop3)
     Population Testing Prep (pop2, pop3, pop2+pop3)
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,613: Line 4,613:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 23, 2012
     August 23, 2012
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Colony Picking
     Colony Picking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP-ST-pLac-LuxI; 40 colonies, 1 picked
     LacI-RFP-ST-pLac-LuxI; 40 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP-ST-pLac-LuxI; 30 colonies, 1 picked
     LacI-RFP-ST-pLac-LuxI; 30 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 23
     August 23
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
</div>
</div>
Line 4,667: Line 4,667:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,676: Line 4,676:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,691: Line 4,691:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,700: Line 4,700:
     Population Testing from 8/22 prep after 24 hours
     Population Testing from 8/22 prep after 24 hours
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,706: Line 4,706:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <ul>
     <ul>
Line 4,765: Line 4,765:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,803: Line 4,803:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,833: Line 4,833:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,842: Line 4,842:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 24, 2012
     August 24, 2012
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP-ST-pLac-LuxI
     LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT
     pTet-LasR-DT
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasI
     pTet-LasI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP-ST-pLac-LuxI
     LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas
     pLas
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasI into pLac-LuxR-DT-pLux-TetR-GFP-ST
     pTet-LasI into pLac-LuxR-DT-pLux-TetR-GFP-ST
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page74" class='notebook_page'>
<div id="page74" class='notebook_page'>
Line 4,897: Line 4,897:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
</div>
</div>
     August 24
     August 24
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,914: Line 4,914:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,926: Line 4,926:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 4,938: Line 4,938:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 25, 2012
     August 25, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Plasmid Isolation
     Glycerol Stock/Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP-ST-pLac-LuxI
     LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page75" class='notebook_page'>
<div id="page75" class='notebook_page'>
Line 4,968: Line 4,968:
     LacI-RFP-ST-pLac-LuxI
     LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     LacI-RFP-ST-pLac-LuxI into pLas
     LacI-RFP-ST-pLac-LuxI into pLas
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 25
     August 25
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,008: Line 5,008:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,026: Line 5,026:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page76" class='notebook_page'>
<div id="page76" class='notebook_page'>
Line 5,048: Line 5,048:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,072: Line 5,072:
     Primer Dilution
     Primer Dilution
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,087: Line 5,087:
     Colony PCR
     Colony PCR
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page77" class='notebook_page'>
<div id="page77" class='notebook_page'>
Line 5,110: Line 5,110:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,141: Line 5,141:
     August 26, 2012
     August 26, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colony Picking
     Colony Picking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked
     pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculation
     Inoculation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI-RFP-ST-pLac-LuxI
     pLas-LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 26
     August 26
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies Picked
     Colonies Picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,184: Line 5,184:
     Population testing
     Population testing
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,204: Line 5,204:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 27, 2012
     August 27, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Plasmid Isolation
     Glycerol Stock/Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI-RFP-ST-pLac-LuxI
     pLas-LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     PCR
     PCR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Add second LacO site to pLac
     Add second LacO site to pLac
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI-RFP-ST-pLac-LuxI
     pLas-LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 27
     August 27
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,269: Line 5,269:
     Digestion and Gel extraction
     Digestion and Gel extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,281: Line 5,281:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,308: Line 5,308:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,341: Line 5,341:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 28, 2012
     August 28, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Primer Dilutions
     Primer Dilutions
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 28
     August 28
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colony PCR
     Colony PCR
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,375: Line 5,375:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,387: Line 5,387:
     Population Testing
     Population Testing
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,393: Line 5,393:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,419: Line 5,419:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,442: Line 5,442:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,451: Line 5,451:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,471: Line 5,471:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 29, 2012
     August 29, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLas-LacI-RFP-ST-pLac-LuxI into pTet-LasR-DT
     pLas-LacI-RFP-ST-pLac-LuxI into pTet-LasR-DT
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 29
     August 29
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Population Test Prep
     Population Test Prep
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,529: Line 5,529:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 30
     August 30
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,560: Line 5,560:
     Colony PCR
     Colony PCR
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,566: Line 5,566:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,578: Line 5,578:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,584: Line 5,584:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page85" class='notebook_page'>
<div id="page85" class='notebook_page'>
Line 5,590: Line 5,590:
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 31, 2012
     August 31, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colony picking
     Colony picking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     PCR Reaction
     PCR Reaction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Add LacO binding site to pLac; 65.2 degrees found to be optimal temperature for elongation
     Add LacO binding site to pLac; 65.2 degrees found to be optimal temperature for elongation
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO
     pLac-LacO
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     August 31
     August 31
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid Isolation
     Glycerol Stock and Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,645: Line 5,645:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,659: Line 5,659:
     Colony PCR
     Colony PCR
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,665: Line 5,665:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,677: Line 5,677:
     Population Test Results
     Population Test Results
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,702: Line 5,702:
     </ul>
     </ul>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 1, 2012
     September 1, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Plasmid Isolation
     Glycerol Stock/Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
Line 5,720: Line 5,720:
</div>
</div>
<div id="page87" class='notebook_page'>
<div id="page87" class='notebook_page'>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Colony Picking
     Colony Picking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO
     pLac-LacO
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR
     pLac-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR-RBS-RFP
     pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-RBS-GFP-T
     pTet-RBS-GFP-T
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 1
     September 1
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligations
     Ligations
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,798: Line 5,798:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,810: Line 5,810:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,816: Line 5,816:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page89" class='notebook_page'>
<div id="page89" class='notebook_page'>
Line 5,823: Line 5,823:
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 2, 2012
     September 2, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Plasmid Isolation
     Glycerol Stock/Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO
     pLac-LacO
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 3, 2012
     September 3, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR
     pLac-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR-RBS-RFP
     pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-RBS-GFP-T
     pTet-RBS-GFP-T
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pLac-TetR
     pLac-TetR
Line 5,876: Line 5,876:
     pLac-TetR-RBS-RFP
     pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-RBS-GFP-T
     pTet-RBS-GFP-T
</p>
</p>
-
<br/>
+
 
</div>
</div>
<div id="page90" class='notebook_page'>
<div id="page90" class='notebook_page'>
Line 5,890: Line 5,890:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 3
     September 3
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock
     Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,910: Line 5,910:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,925: Line 5,925:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,940: Line 5,940:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,964: Line 5,964:
     Colony PCR for I3-98-2 and I4-1-2-
     Colony PCR for I3-98-2 and I4-1-2-
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 5,977: Line 5,977:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 4, 2012
     September 4, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI (Atc 10 microliters)
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI (Atc 10 microliters)
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI (IPTG 10 microliters)
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI (IPTG 10 microliters)
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 4
     September 4
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,021: Line 6,021:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,030: Line 6,030:
     Colonies picked from I4-1-2
     Colonies picked from I4-1-2
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 5, 2012
     September 5, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
Line 6,051: Line 6,051:
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 with Atc
     1 with Atc
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 with IPTG
     1 with IPTG
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 with No induction
     1 with No induction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 5
     September 5
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid Isolation
     Glycerol Stock and Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,101: Line 6,101:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,125: Line 6,125:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,134: Line 6,134:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page94" class='notebook_page'>
<div id="page94" class='notebook_page'>
Line 6,140: Line 6,140:
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 6, 2012
     September 6, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Sequencing
     Sequencing
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO
     pLac-LacO
</p>
</p>
-
<br/>
+
 
<p>
<p>
     RFP-LVA
     RFP-LVA
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Inoculations
     Inoculations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone
     Chlorabackbone
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
     pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
Line 6,181: Line 6,181:
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
     pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 with Atc
     1 with Atc
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 with IPTG
     1 with IPTG
</p>
</p>
-
<br/>
+
 
<p>
<p>
     1 with No induction
     1 with No induction
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Chlorabackbone
     Chlorabackbone
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page95" class='notebook_page'>
<div id="page95" class='notebook_page'>
Line 6,209: Line 6,209:
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 6
     September 6
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation and Glycerol Stock
     Plasmid Isolation and Glycerol Stock
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,232: Line 6,232:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,247: Line 6,247:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,276: Line 6,276:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 7, 2012
     September 7, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Inoculation
     Inoculation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-RBS-GFP-T
     pLac-RBS-GFP-T
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-RBS-GFP-T-pLac-TetR
     pTet-RBS-GFP-T-pLac-TetR
Line 6,359: Line 6,359:
     RBS-GFP-ST
     RBS-GFP-ST
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 7
     September 7
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Test Digestions
     Test Digestions
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,388: Line 6,388:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,394: Line 6,394:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 8, 2012
     September 8, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Time-Lapse Experiment to observe toggle switch
     Time-Lapse Experiment to observe toggle switch
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
Line 6,417: Line 6,417:
     pLac-RBS-GFP-T
     pLac-RBS-GFP-T
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-RBS-GFP-T-pLac-TetR
     pTet-RBS-GFP-T-pLac-TetR
Line 6,477: Line 6,477:
     GFP
     GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligations
     Ligations
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR into Chlora
     pLac-TetR into Chlora
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-RBS-GFP-T into Chlora
     pLac-RBS-GFP-T into Chlora
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-RBS-GFP-T into Chlora
     pTet-RBS-GFP-T into Chlora
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI into Chlora
     pTet-LacI into Chlora
</p>
</p>
-
<br/>
+
 
-
<br/>]
+
]
</div>
</div>
<div id="page100" class='notebook_page'>
<div id="page100" class='notebook_page'>
Line 6,504: Line 6,504:
     Digestion/Extraction
     Digestion/Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     GFP
     GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO
     pLac-LacO
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
Line 6,519: Line 6,519:
     pLac-RBS-GFP-T
     pLac-RBS-GFP-T
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-RBS-GFP-T-pLac-TetR
     pTet-RBS-GFP-T-pLac-TetR
Line 6,567: Line 6,567:
     pLac-LuxI
     pLac-LuxI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 8
     September 8
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies Picked
     Colonies Picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,591: Line 6,591:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
</div>
</div>
<div id="page102" class='notebook_page'>
<div id="page102" class='notebook_page'>
Line 6,598: Line 6,598:
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 9, 2012
     September 9, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colony Picking
     Colony Picking
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR, 1 colony picked
     pLac-TetR, 1 colony picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-RBS-GFP-T, 1 colony picked
     pLac-RBS-GFP-T, 1 colony picked
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI, 1 colony picked
     pTet-LacI, 1 colony picked
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO-GFP
     pLac-LacO-GFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 9
     September 9
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid Isolation
     Glycerol Stock and Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,654: Line 6,654:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,671: Line 6,671:
     Ligations
     Ligations
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,698: Line 6,698:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 10, 2012
     September 10, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Miniprep
     Glycerol Stock/Miniprep
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-TetR
     pLac-TetR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-RBS-GFP-T
     pLac-RBS-GFP-T
Line 6,724: Line 6,724:
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Gel Extraction
     Gel Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO-GFP
     pLac-LacO-GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI into pLac-LacO-RBS-GFP-ST
     pTet-LacI into pLac-LacO-RBS-GFP-ST
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-RBS-GFP-T-pTet-LacI into chlora backbone
     pLac-RBS-GFP-T-pTet-LacI into chlora backbone
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate Projects
     Triple Population and AND Gate Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 10
     September 10
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Colonies Picked
     Colonies Picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,795: Line 6,795:
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,804: Line 6,804:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 11, 2012
     September 11, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     PCR
     PCR
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO
     pLac-LacO
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO x2
     pLac-LacO x2
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 12, 2012
     September 12, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Digestion/Gel Extraction
     Digestion/Gel Extraction
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI-pLac-LacO-RBS-GFP-ST
     pTet-LacI-pLac-LacO-RBS-GFP-ST
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page106" class='notebook_page'>
<div id="page106" class='notebook_page'>
Line 6,848: Line 6,848:
     Experiments
     Experiments
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle with 20 micro liters IPTG
     Toggle with 20 micro liters IPTG
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Toggle with 40 micro liters ATc
     Toggle with 40 micro liters ATc
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Strain 1 of dual population toggle with inducer strain
     Strain 1 of dual population toggle with inducer strain
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Strain 2 of dual population toggle with inducer strain
     Strain 2 of dual population toggle with inducer strain
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO-RBS-GFP-ST-pTet-LacI into chlora backbone
     pLac-LacO-RBS-GFP-ST-pTet-LacI into chlora backbone
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate
     Triple Population and AND Gate
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 13
     September 13
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid Isolation
     Glycerol Stock and Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,925: Line 6,925:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,949: Line 6,949:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 6,987: Line 6,987:
     Ligations for Chlora
     Ligations for Chlora
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,002: Line 7,002:
     Transformation
     Transformation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,020: Line 7,020:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,037: Line 7,037:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Single and Double Population Projects
     Single and Double Population Projects
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 14, 2012
     September 14, 2012
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP into Chlora backbone
     pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP into Chlora backbone
Line 7,056: Line 7,056:
     pLac-RBS-GFP-T into Chlora backbone
     pLac-RBS-GFP-T into Chlora backbone
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pTet-RBS-GFP-T-pLac-TetR into Chlora backbone
     pTet-RBS-GFP-T-pLac-TetR into Chlora backbone
Line 7,108: Line 7,108:
     pLac-LacO x2-RBS-GFP-ST-pTet-LacI
     pLac-LacO x2-RBS-GFP-ST-pTet-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock/Plasmid Isolation
     Glycerol Stock/Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO-GFP
     pLac-LacO-GFP
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
<p>
<p>
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-LacO-GFP
     pLac-LacO-GFP
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pTet-LacI
     pTet-LacI
</p>
</p>
-
<br/>
+
 
<p dir="ltr">
<p dir="ltr">
     pLac-LacO x2-RBS-GFP-ST-pTet-LacI
     pLac-LacO x2-RBS-GFP-ST-pTet-LacI
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Inoculation
     Inoculation
</p>
</p>
-
<br/>
+
 
<p>
<p>
     pLac-GFP-pTet-LacI
     pLac-GFP-pTet-LacI
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page111" class='notebook_page'>
<div id="page111" class='notebook_page'>
Line 7,148: Line 7,148:
     Triple Population and AND Gate
     Triple Population and AND Gate
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 15
     September 15
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plasmid Isolation
     Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,180: Line 7,180:
     Colonies picked
     Colonies picked
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,198: Line 7,198:
     Digestion
     Digestion
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,224: Line 7,224:
     Ligations
     Ligations
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,248: Line 7,248:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,271: Line 7,271:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page114" class='notebook_page'>
<div id="page114" class='notebook_page'>
Line 7,279: Line 7,279:
     Triple Population and AND Gate
     Triple Population and AND Gate
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 18
     September 18
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Glycerol Stock and Plasmid Isolation
     Glycerol Stock and Plasmid Isolation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,302: Line 7,302:
     Digestion and Gel Extraction
     Digestion and Gel Extraction
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,320: Line 7,320:
     Ligation
     Ligation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,355: Line 7,355:
     Innoculation
     Innoculation
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,370: Line 7,370:
     Testing AND Gate
     Testing AND Gate
</p>
</p>
-
<br/>
+
 
<ul>
<ul>
     <li>
     <li>
Line 7,382: Line 7,382:
     </li>
     </li>
</ul>
</ul>
-
<br/>
+
 
<p>
<p>
     Triple Population and AND Gate
     Triple Population and AND Gate
</p>
</p>
-
<br/>
+
 
<p>
<p>
     September 19
     September 19
</p>
</p>
-
<br/>
+
 
<p>
<p>
     Plate Experiments for AND Gate
     Plate Experiments for AND Gate
</p>
</p>
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
-
<br/>
+
 
</div>
</div>
<div id="page116" class='notebook_page'>
<div id="page116" class='notebook_page'>
Line 7,405: Line 7,405:
     Triple Population and AND Gate
     Triple Population and AND Gate
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     September 20
     September 20
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     Glycerol Stock and Plasmid Isolation
     Glycerol Stock and Plasmid Isolation
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     Digestions (repeated 3X)
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     September 22
     September 22
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     Ligations (Repeated)
     Ligations (Repeated)
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     Single and Double Population Projects
     Single and Double Population Projects
</p>
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<p>
<p>
     September 22, 2012
     September 22, 2012
</p>
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<p>
<p>
     Single toggle experiment - No induction at start, check every 6 hours, induce with IPTG after first 6 hours, and induce with ATc in new tube after 12 Hours
     Single toggle experiment - No induction at start, check every 6 hours, induce with IPTG after first 6 hours, and induce with ATc in new tube after 12 Hours
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     September 22
     September 22
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     Ligations (Repeated)
     Ligations (Repeated)
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     September 23
     September 23
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     Digestions
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     September 23
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     Plasmid Isolation
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Latest revision as of 01:28, 4 October 2012

Cover page

June 6

Single and Double Population Projects

Transformation

  • BBa_J61002: “RFP” promoter
  • BBa_K081012: GFP protein generator (RBS-GFP)
  • BBa_J23103: constitutive family member
  • Bba_J04450: RFP Coding Device (pLas-RBS-RFP-Term)

Single and Double Population Projects

June 7

Colonies picked and glycerol stocked made

  • RFP promoter: 5 colonies seen: 1 colony picked
  • RBS-GFP: 2 colonies seen: 1 colony picked
  • constitutive family promoter: 2 colonies seen: 1 colony picked
  • pLas-RBS-RFP-Term: 6 colonies seen: 1 colony picked

Single and Double Population Projects

June 8

Plasmid isolation

  • RBS-GFP
    • Concentration:111.2 ng/ul
  • constututive family member
    • Concentration: 109.8 ng/ul
  • pLasI-RBS-RFP-Term
    • Concentration: 113.9 ng/ul

Single and Double Population Projects

June 11

Digestion

  • RBS-GFP (E/S)---(wrong enzymes used)
  • constitutive promoter (E/X)---(wrong enzymes used)
  • constitutive promoter (S/P)
  • pLasI-RBS-RFP-Term (X/P)

Single and Double Population Projects

June 12

Digestion

  • RBS-GFP (X/P)

Ligation

  • Vector: constitutive promoter
  • Insert: RBS-GFP
  • 0:1--- 0 colonies counted
  • 2:1--- 7 colonies counted

June 13

Incubate constitutive promoter-RBS-GFP in LB carb broth overnight @ 37*C and 220 rpm

  • 2:1--- 2 colonies picked

Single and Double Population Projects

June 14

Glycerol stock and miniprep

  • constitutive promoter-RBS-GFP
    • colony 1 picked: 91 ng/ul
    • colony 2 picked: 97 ng/ul

Test Digestion for each plasmid: correct results received

Single and Double Population Projects

June 15

Plasmid isolation

  • prom-RBS-GFP: Concentration: 127 ng/µl

Single and Double Population Projects

July 16

Transformations

  • Bba_I763035 pTetR-RBS-LacI-RBS-GFP-Term-Term
  • Bba_K093005 RBS-RFP
  • Bba_R0010 pLacI
  • Bba_C0040 TetR

Single and Double Population Projects

July 17

  • Bba_I763035 pTetR-RBS-LacI-RBS-GFP-Term-Term
    • 2 colonies picked
  • Bba_K093005 RBS-RFP
    • 2 colonies picked
  • Bba_R0010 pLacI
    • 2 colonies picked
  • Bba_C0040 TetR
    • 2 colonies picked

Single and Double Population Projects

July 18

Glycerol stocks made

  • pTetR-RBS-LacI-RBS-GFP-Term-Term
    • Concentration: 236.2 ng/µl
  • RBS-RFP
    • Concentration: 92.9 ng/µl
  • pLacI
    • Concentration: 60.6 ng/µl
  • TetR
    • Concentration: 110.9 ng/µl

Digestion

  • pTetR-RBS-LacI-RBS-GFP-Term-Term (E/P)
  • RBS-RFP (X/P)
  • pLacI (S/P)
  • TetR (X/P)

Gel Extraction

  • RBS-RFP
    • Concentration: 10.8 ng/µl
  • pLac
    • Concentration: 19.6 ng/µl
  • TetR
    • Concentration: 6.2 ng/µl

Ligation

  • Vector: pLac
  • Insert: TetR

Transformation

  • pLac-TetR
    • 0:1, 0 colonies seen
    • 2:1, 20 colonies seen, 1 picked
    • 4:1, 20 colonies seen, 1 picked

July 19

Triple Population and AND Gate Projects

Transformations

  • BBa_I721001: lead promoter
  • BBa_K091109: LuxS
  • BBa_C0078: LasI
  • BBa_C0062: LuxR
  • BBa_C0061: LuxI
  • BBa_E0432: RBS-YFP

July 20

Triple Population and AND Gate Projects

Colonies picked

  • LuxS: 20 colonies seen: 1 colony picked
  • LuxR: 5 colonies seen: 1 colony picked
  • LuxI: 5 colonies seen: 1 colony picked
  • RBS-YFP: no colonies seen
  • LasI: no colonies seen
  • lead promoter: no colonies seen
  • July 20

    Single and Double Population Projects

    Glycerol stocks & plasmid isolation

    • pLas-TetR: Concentrations: (2:1) 67.4 and (4:1) 68.0

    Digestion

    • (2:1) pLac-TetR

    Gel Extraction

    • pLac-TetR: Concentration: 20.5 ng/µl

    Ligation

    • Vector: pLac-TetR
    • Insert: RBS-YFP

    Transformation

    • pLac-TetR-RBS-YFP
      • (0:1) no colonies seen
  • (2:1) 1 colony picked
  • Single and Double Population Projects

    Triple Population and AND Gate Projects

    July 20

    Repeat Transformation

    • lead promoter
    • LasI
    • RBS-YFP

    Triple Population and AND Gate Projects

    July 21

    Glycerol Stock

    • LuxS
    • LuxR
    • LuxI

    Colonies picked

    • RBS-YFP: 1 colony picked
  • LasI: 1 colony picked
  • lead promoter: no colones seen
  • Digestion & Gel Extraction

    • LuxS (wrong enzymes used)
    • LuxR: Concentration: 11.1 ng/µl
    • LuxI: Concentration: 7.1 ng/µl

    Triple Population and AND Gate Projects

    July 22

    Plasmid Isolation

    • LuxS: Concentration: 75.2 ng/µl
    • LasI: Concentration: 90.1 ng/µl
    • RBS-YFP: Concentration: 76.4 ng/µl

    Triple Population and AND Gate Projects

    July 23

    DIgestion and gel extraction

    • LuxS (X/P) Concentration: not right size to be repeated
    • LasI (E/S) Concentration: 20.3 ng/µl
    • RBS-YFP (X/P) Concentration: 18.2 ng/µl
    • (wrong enzymes used in digestions - plasmid isolation repeated)

    Ligation

    • Vector: pLac
    • Insert: LuxR

    Transformation

    • BBa_ K117002: pLsrA
  • BBa_R0062: pLuxR
  • BBa_I721001: lead promoter
  • Colonies picked

    • pLac-LuxR: 15 colonies seen: 1 colony picked
    • pLsrA: 20 colonies seen: colony picked
    • pLuxR: 3 colonies seen: 1 colony picked

    July 23

    Glycerol stock and plasmid isolation

    • pLac-TetR-RBS-YFP: Concetration: 138.4

    Digestion

    • pLac-TetR-RBS-YFP (X/P)
    • pTetR-LacI-RBS-GFP (S/P)

    Ligation

    • Vector: pTetR-LacI-RBS-GFP
    • Insert: pLac-TetR-RBS-YFP
      • 2 colonies picked after plating and incubation

    Triple Population and AND Gate Projects

    July 24

    Plasmid Isolation

    • LuxS: Concentration: 85.9 ng/µl
    • LuxI: Concentration:85.7 ng/µl
    • LasI: Concentration: 224.1 ng/µl

    Digestion and gel extraction

    • LuxI (S/P): Concentration: 25.5 ng/µl
    • LasI (S/P): Concentration: 30.7 ng/µl

    Ligation

    • Vector 1: LuxI
    • Insert 1: RBS-YFP
    • Vector 2: LasI
    • Insert 2: RBS-RFP

    Triple Population and AND Gate Projects

    July 24

    Transformation

    • BBa_C0079: LasR
    • BBa_B0015: Term-Term
    • BBa_I14016: pLac
    • BBa_C0012: LacI

    Triple Population and AND Gate Projects

    July 25

    Colonies picked

    • LuxI-RBS-YFP: 100 colonies seen: 1 picked
    • LasI-RBS-RFP: 50 colonies seen: 1 picked

    Plasmid Isolation

    • pLac-LuxR: Concentration: 107.5
    • pLsrA: Concentration: 44.3
    • pLuxR: Concentration: 35.9

    Digestion and gel extraction

    • pLsrA (S/P): Concentration: 20.6 ng/µl
  • pLuxR (S/P): Concentration: 18.7 ng/µl
  • Transformation

    • BBa_R0040: pTetR
    • BBa_R0079: pLasR
    • BBa_K17036: RBS-CFP

    Single and Double Population Projects

    July 25

    Glycerol Stock and plasmid isolation

    • pTetR-LacI-RBS-GFP-pLac-TetR-RBS-YFP (full toggle switch) from both colines picked
      • Concentration 1: 194.8 ng/µl
      • Concentartion 2: 117.2 ng/µl

    Transformation

    • BBa_C0079: LasR
    • BBa_I14016: pLas
    • BBa_C0012: LacI

    Tetracycle Stock: 50 ng/?l

    IPTG stock: 50 ng/?l

    Triple Population and AND Gate Projects

    July 26

    Colonies picked

    • pTetR: 10 colonies seen: 1 colony picked
    • pLasR: 10 colonies seen: 1 colony picked
    • RBS-CFP: no colonies seen

    Glycerol stock and plasmid isolation

    • LuxI-RBS-YFP: Concentration: 70.8 ng/µl
    • LasI-RBS-RFP: Concentration: 4.0 (to be repeated) ng/µl

    Digestion and gel extraction

    • LuxI-RBS-YFP (X/P): Concentration: 2.8 (to be repeated)

    Single and Double Population Projects

    July 26

    Transformation

    • BBa_C0012: LacI
  • BBa_I732100: LacI (2)
  • Triple Population and AND Gate Projects

    July 27

    Glycerol stock and plasmid isolation

    • pTetR: Concentration: 42.4 ng/µl
    • pLasR: Concentration: 62.2 ng/µl
    • LuxI-RBS-YFP: Concentration: 120.9 ng/µl
    • LasI-RBS-RFP: Concentration: 85 ng/µl

    Digestion and gel extraction

    • pTetR (S/P): Concentration: 17.4 ng/µl
    • pLasR (S/P): Concentration: 23.8 ng/µl
    • LuxI-RBS-YFP (X/P): Concentration: 13.8 ng/µl
    • LasI-RBS-RFP (X/P): Concentration: 8.9 ng/µl

    Ligation

    • Vector 1: pLsrA
    • Insert 1:LuxI-RBS-YFP
  • Vector 2: pLuxR
  • Insert 2:LasI-RBS-RFP
  • Transformation:

    • pLsrA-LuxI-RBS-YFP
    • pLuxR-LasI-RBS-RFP
    • BBa_B0422: RBS-CFP

    Single and Double Population Projects

    July 27

    Colonies picked

    • LacI: 8 colonies seen: 1 colony picked
    • LacI (2): 2 colonies seen: 1 colony picked

    Plasmid isolation

    • LasR: Concentration: 95.8 ng/µl
    • Term-Term: Concentration: 120.1 ng/µl

    Toggle switch test

    • IPTG innoculation
  • TET innoculation
  • No innoculation
  • Triple Population and AND Gate Projects

    July 28

    Colonies picked

    • pLsrA-LuxI-RBS-YFP: 20 colonies seen: 1 colony picked
    • pLuxR-LasI-RBS-RFP: 2 colonies seen: 1 colony picked
    • RBS-CFP: 10 colonies seen: 1 colony picked

    Single and Double Population Projects

    July 28

    Glycerol stock and plasmid isolation

    • LacI: Concentration: 73.9 ng/µl
    • LacI (2): Concentration: 109.8 ng/µl

    Triple Population and AND Gate Projects

    July 29

    Glycerol Stocks

    • pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl
    • pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl
    • RBS-CFP: Concentration: 84.0 ng/µl

    Triple Population and AND Gate Projects

    July 30

    Plasmid Isolation

    • pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl
    • pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl
    • RBS-CFP: Concentration: 84.0 ng/µl

    Digestion and gel extraction

    • LuxS (X/P): Gel extraction failed
    • pLuxR-LasI-RBS-RFP (X/P): Gel extraction failed
    • RBS-CFP (X/P): Concentration: 10.4 ng/µl
    • pLac-LuxR (S/P): Concentration: 21.0 ng/µl

    Innoculation

    • pLuxR-LasI-RBS-RFP
    • LuxS

    Ligation and transformation:

    • Vector: pLasR
    • Insert: RBS-CFP
    • 2 colonies shown: 1 colony picked

    Single and Double Population Projects

    July 30

    Experiment 7

    • 150 ng/?l Tet
    • 200 ng/?l Tet
    • 300 ng/?l Tet
    • 1mM IPTG
    • No Induction

    Innoculation

    • RBS-GFP

    Triple Population and AND Gate Projects

    July 31

    Plasmid isolation

    • LuxS: Concentration: 78.1 ng/µl
    • pLuxR-LasI-RBS-RFP: Concentration: 48.7 ng/µl

    Digestion:

    • LuxS: (X/P); 516 bp
    • pLuxR+LasI-RBS-RFP: Digested at XbaI and PstI; 1421 bp

    Test Digestion:

    • LuxS: digested at EcoRI and PstI
    • pLuxR-lasI-RBS-RFP: digested at EcoRI and PstI

    Colonies:

    • pLuxR-lasI-RBS-RFP: 1 additional colony picked
    • LuxS: 1 additional colony picked

    Single and Double Population Projects

    July 31

    Plasmid Isolation:

    • GFP: 137.5 ng/µl

    August 1, 2012:

    Plasmid Isolation:

    • pLuxR-LasI-RBS-RFP: 61.2 ng/µl
    • pLasR-RBS-CFP: 49.2 ng/µl

    Digestion:

    • GFP: Digested XbaI and PstI
    • LacI: Digested XbaI and PstI
    • pLuxR-LasI-RBS-RFP: Digested XbaI and PstI
    • pLusR-RBS-CFP: Digested XbaI and PstI

    Gel Exraction:

    • GFP: 8.5 ng/µl
    • LacI: 12.7 ng/µl

    Colony:

    • pLasR-RBS-CFP: 1 additional colony picked

    Transformation:

    • pLuxR-lasI-RBS-RFP
    • BBa_J2309: pTetR-luxI

    Single and Double Population Projects

    August 1

    Ligation:

    • Vector: pTet; Insert: GFP
    • Vector: pTet; Insert: LacI
    • Vector: pLac; Insert: GFP

    Transformation:

    • pTet-GFP
    • pTet-LacI
    • pLac-GFP

    Triple Population and AND Gate Projects

    August 2, 2012:

    Colonies:

    • pLuxR-LasI-RBS-RFP: about 5 colonies; 1 picked
    • pTetR-LuxI: about 2 colonies; 1 picked

    Plasmid Isolation:

    • LuxS: Concentration – 40.5 ng/µl
    • pLasR-CFP: 95.8 ng/µl

    Digestion:

    • LasI: Digested at XbaI and PstI
    • LasR: Digested at XbaI and PstI
    • LuxS: Digested at XbaI and PstI
    • pLasR-RBS-CFP: Digested at XbaI and PstI

    Gel Extraction:

    • LasI: Concentration – 4.1 ng/µl
    • LasR: Concentration – 5.3 ng/µl
    • pLasR-RBS-CFP – 13.4 ng/µl

    Ligation:

    • Vector: pLac
    • Insert: LasI
    • Transformation 2:1 – 3 colonies; 1 picked

    Single and Double Population Projects

    August 2

    Colonies:

    • pTet-GFP: 7 colonies; 1 picked
    • pTet-LacI: 20 colonies; 1 picked
    • pLac-GFP: 20 colonies; 1 picked

    Single and Double Population Projects

    August 3, 2012:

    Glycerol Stocks/Miniprep:

    • pTet-GFP: Concentration-142.2 ng/µl
    • pTet-LacI: Concentration-67.2 ng/µl
    • pLac-GFP: Concentration-50.5 ng/µl

    Digestion:

    • pTet-GFP: Digested at SpeI and PstI
    • pTet-LacI: Digested at SpeI and PstI
    • pLac-GFP: Digested at XbaI and PstI
    • pLac-TetR: Digested at XbaI and PstI

    Triple Population and AND Gate Projects

    August 3

    Ligation:

    • Vector: pTetR
    • Insert: LasR
    • Transformation 2:1 – 1 colony; 1 picked

    Ligation:

    • Vector: pLasR
    • Insert: RBS-CFP
    • Transformation: 2:1

    Glycerol Stock:

    • pLuxR-LasI-RBS-RFP: Concentration – 45.1 ng/µl
    • pTetR-LuxI: Concentration – 105.1 ng/µl

    Digestion:

    • pLuxR-LasI-RBS-RFP: Digested at XbaI and PstI

    Ligation:

    • Vector: pLac-luxR
    • Insert: pLuxR-LasI-RBS-RFP

    Transformation

    • BBa_K091109 (2010) LuxS
    • BBa_K091109 (2011) LuxS

    Triple Population and AND Gate Projects

    August 4

    Colonies picked

    • BBa_K091109 (2010) LuxS: 70 colonies seen: 1 picked
    • BBa_K091109 (2011) LuxS: 100 colonies seen: 1 picked

    Triple Population and AND Gate Projects

    August 5

    Glycerol Stock

    • LuxS
    • LuxS
    • pTetR-RBS-CFP

    Transformation (repeated)

    • pLasR-RBS-CFP

    Triple Population and AND Gate Projects

    August 6

    Colonies picked

    • pLasR-RBS-CFP: 10 colonies seen: 1 colony picked

    Innoculation

    • pTetR-LuxI

    Plasmid isolation

    • LuxS: Concentration: 57.6
  • LuxS: Concentration: 76.4
  • pTetR-RBS-CFP: Concentration: 122.3
  • Digestion and gel extraction (improperly prepared for gel)

    • LuxS: Concentration: N/A
    • LuxS: Concentration: N/A
    • pTetR-RBS-CFP: Concentration: 21.9

    Innoculation

    • LuxS
    • LuxS
    • pTetR-RBS-CFP

    Single and Double Population Projects

    August 6, 2012:

    PCR:

    RFP-LVA created

    Experiments:

    Test mechanism shows TetR and LacI are medium strength repressors.

    Toggle Experiment fails to show significant changes in fluorescence protein after 2 or 6 hours.

    Triple Population and AND Gate Projects

    August 7

    Glycerol Stock

    • pLasR-RBS-CFP

    Plasmid isolation

    • LuxS: Concentration: 120.3
    • LuxS: Concentration:101.7
    • pTetR-LasR: Concentration: 65.3
    • pLasR-RBS-CFP: Concentration: 77.1
    • pLac-luxR-pLuxR-LasI-RBS-RFP: Concentration: 103.6

    Digestion and gel extraction

    • LuxS (X/P): Concentration: 1.5
    • LuxS (X/P): Concentration: 1.1
    • pTetR-LasR (S/P): Concentration: 20.4
  • pLasR-RBS-CFP (X/P): Concentration: 13.8
  • Ligation

    • Vector 1: pTetR-lasR
    • Insert 1: pLasR-RBS-CFP
    • Vector 2: pyear
    • Insert 2: LuxS

    Transformation

    • pSBIC3 chlora backbone
    • pLac-luxR-pLuxR-LasI-RBS-RFP

    Single and Double Population Projects

    August 7, 2012

    Glycerol Stock/Miniprep

    pTet-LacI

    pLac-GFP

    Digestion & Gel Extraction

    pTet-LacI: XbaI and PstI

    pLac-GFP: SpeI and PstI

    Ligation/Transformation

    Vector: pLac-GFP

    Insert: pTet-LacI

    Triple Population and AND Gate Projects

    August 8

    Colonies picked

    • chlora bb: 100 colonies seen: 1 picked
    • pLac-luxR-pLuxR-LasI-RBS-RFP: 300 colonies seen: 1 picked
    • pTetR-lasR-pLasR-RBS-CFP: 1 colony seen: 1 picked

    Repeat transformations from ligation

    • pyear-LuxS
    • pTetR-lasR-pLasR-RBS-CFP

    Single and Double Population Projects

    August 8, 2012

    Transformations:

    Negative control had ~20 colonies

    2:1 sample had ~ 40 colonies, we picked 2

    Positive had too many colonies to count

    PCR Reaction (Gradient)

    -55, 60, and 65 degrees

    -55 degrees found to be most ideal

    Gel Extraction (of PCR)

    Poor results, no DNA extracted

    Plate test for toggle switch:

    1 tube inoculated with IPTG 10 microliters of .2mM solution

    1 tube inoculated with ATC 10 microliters of 20ng/microliter

    Triple Population and AND Gate Projects

    August 9

    Glycerol stocks

    • chlora backbone
    • pLac-LuxR-pLuxR-LasI-RBS-RFP
  • pTetR-LasR-pLasR-RBS-CFP
  • Innoculation

    • pLac-Las-I
    • pTetR-LuxI

    Plasmid Isolation

    • chlora backbone
    • pLac-LuxR-pLuxR-LasI-RBS-RFP
    • pTetR-LasR-pLasR-RBS-CFP

    Digestion

    • Term-Term (S/P)
    • chlora backbone (E/P)
    • pLac-LuxR-pLuxR-LasI-RBS-RFP (E/P)
    • pTetR-LasR-pLasR-RBS-CFP (E/P)

    Gel Extraction

    • Term-Term: Concentration: 44.3
    • chlora backbone: Concentration: 332.9
    • pLac-LuxR-pLuxR-LasI-RBS-RFP: bad results
    • pTetR-LasR-pLasR-RBS-CFP: bad results

    Innoculation: pLac-LuxR-pLuxR-LasI-RBS-RFP

    Single and Double Population Projects

    August 9, 2012

    Glycerol stock/miniprep:

    pLac-GFP-ST-pTet-LacI

    PCR Reaction

    RFP-LVA

    Experiment: Repressor Test Mechanism (LacI)

    1 - Induced 10microliters of 10mM IPTG

    1 - No induction

    Digestion and Gel Extraction:

    RFP-LVA: XbaI and PstI

    Ampicillin Backbone: SpeI and PstI

    Triple Population and AND Gate Projects

    August 10

    Glycerol Stock

    • pLac-LuxR-pLuxR-LasI-RBS-RFP

    Plasmid isolation

    • pLac-LuxR-pLuxR-LasI-RBS-RFP: Concentration: 125.1

    Digestion

    • pLac-LuxR-pLuxR-LasI-RBS-RFP (E/P)

    Ligation

    • Vector1: Term-Term
    • Insert1: pLasR-RBS-CFP
    • Vector2: Term-Term
    • Insert2: pLuxR-LasI-RBS-RFP

    Transformation:

    • Term-Term-pLasR-RBS-CFP
    • Term-Term-pLuxR-LasI-RBS-RFP

    Single and Double Population Projects

    August 10, 2012

    Ligation/Transformation

    RFP-LVA into Ampicillin backbone

    Inoculations:

    Toggle

    pLas

    LacI

    LuxR

    pTet

    pLux

    LuxI

    August 11, 2012

    Plasmid isolation

    Toggle

    pLas

    LacI

    LuxR

    pTet

    pLux

    LuxI

    Digestion/Extraction

    LuxR: X and P

    pLux: S and P

    LuxI: S and P

    LasR: X and P

    Double Terminators (DT): X and P

    LasI: X and P

    Triple Population and AND Gate Projects

    August 11

    Colonies picked

    • Term-Term-pLasR-RBS-CFP: 200 colonies seen: 1 picked
    • Term-Term-pLuxR-LasI-RBS-RFP: 100 colonies seen: 1 picked

    Triple Population and AND Gate Projects

    August 12

    Glycerol Stock and Plasmid isolation

    • Term-Term-pLasR-RBS-CFP: Concentration: 219.1
    • Term-Term-pLuxR-LasI-RBS-RFP: Concentration: 107.5

    Transformation repeat

    • pyear-LuxS

    Digestion

    • Term-Term-pLasR-RBS-CFP (X/P)
    • Term-Term-pLuxR-LasI-RBS-RFP (X/P)

    Gel Extraction

    • Term-Term-pLasR-RBS-CFP: Concentration: 10.2
    • Term-Term-pLuxR-LasI-RBS-RFP: Concentration: 15.0

    Ligation

    • Vector1: pTetR-LasR
    • Insert1: Term-Term-pLasR-RBS-CFP
  • Vector2: pLac-LuxR
  • Insert 2: Term-Term-pLuxR-LasI-RBS-RFP
  • Triple Population and AND Gate Projects

    August 13

    Innoculation

    • pLac-LasI
    • pTetR-LuxI

    Single and Double Population Projects

    August 13, 2012

    Miniprep/Glycerol Stock

    RFP-LVA

    Digestions/Extraction

    pLas: S and P

    LacI: X and P

    RFP-LVA: E and P

    Inoculations

    Chlorabackbone

    RFP-LVA

    DT

    Triple Population and AND Gate Projects

    August 14

    Glycerol Stock and Plasmid isolation

    • pTetR-LasR-Term-Term-pLasR-RBS-CFP: Concentration: 95.4
    • pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: Concentration: 108.3

    Digestion

    • pTetR-LasR-Term-Term-pLasR-RBS-CFP: bad results
    • pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: bad results

    Parts Recieved

    • BBa_K091159
    • BBa_K091002
    • BBa_I13453
    • BBa_B0034

    Streaking

    • BBa_K091159 pBad-LsrA

    Ligation repeat

    • Vector1: pTetR-LasR
    • Insert1: Term-Term-pLasR-RBS-CFP
    • Vector2: pLac-LuxR
    • Insert 2: Term-Term-pLuxR-LasI-RBS-RFP

    Single and Double Population Projects

    August 14, 2012

    Miniprep/Glycerol Stock

    Chlorabackbone

    DT

    Digestion/Extraction:

    DT: X and P

    Chlorabackbone: E and P

    Toggle: E and P

    Ligation/Transformation:

    DT into LuxR

    TetR into pLux

    LasI into pTet

    LasR into DT

    pLas into LacI

    pLac into LuxI

    Triple Population and AND Gate Projects

    August 15

    Innoculation

    • pTetR-LuxI
    • pLac-LasI
    • pTetR-LasR-Term-Term-pLasR-RBS-CFP
    • pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP

    Colonies picked

    • pBad-LsrA: 30 colonies seen: 1 picked

    Testing

    • Pop2 (w/o TT) / pTetR-LuxI (48 hours of incubation)
      • 100/0 no results
      • 100/100 no results
      • 100/200 slight RFP detected no increase of RFP from 100/0
    • Pop3 (w/o TT) / pLac-LasI (48 hours of incubation)
      • 100/0 no results
      • 100/100 no results
      • 100/200 slight RFP detected no increase of CFP from 100/0

    Streaking

    BBa_K091109

    • SP3011>1D LuxS
    • SP4011>1D LuxS

    Single and Double Population Projects

    August 15, 2012

    Transformation

    LuxR-DT: 15 colonies, picked 1 colony

    pLux-TetR: 35 colonies, picked 1

    pTet-LasI: Negative control growth; unsuccessful

    LasR-DT: 25 colonies, picked 1

    pLas-LacI: 0 growth

    pLac-LuxI: 15 colonies, picked 1

    Ligation

    LasI into pTet

    Transformation

    pTet-LasI

    pLas-LacI

    Inoculations

    Chlorabackbone

    Triple Population and AND Gate Projects

    August 16

    Colonies

    • pTetR-LuxI:
    • pLac-LasI
    • pTetR-LasR-Term-Term-pLasR-RBS-CFP: 2 colonies seen: 1 colony picked
    • pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: 0 colonies seen
    • LuxS: 200 colonies seen: 1 colony picked
    • LuxS: 100 colonies seen: 1 colony picked

    Glycerol Stock and plasmid isolation

    • pBad-LsrK: Concentration: 64.2
    • pTetR-LasR-Term-Term-pLasR-RBS-CFP: Concentration:
    • pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: Concentration:

    Digestion

    • pTetR-LasR-Term-Term-pLasR-RBS-CFP (E/P)
    • pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP (E/P)
    • pBad-LsrA (S/P) 1749
    • pLsrA-LuxI-RBS-YFP (X/P)

    Testing

    • Pop2 (w/ TT) / pTetR-LuxI (6 hours of incubation)
      • 100/0
      • 100/200
      • 100/400
      • 100/600
      • Results: After 6 and 24 hours: no considerable difference
    • Pop3 (w/ TT) / pLac-LasI (6 hours of incubation)
      • 100/0
      • 100/200
      • 100/400
      • 100/600
      • Results: After 6 and 24 hours: no considerable difference
    • Pop3 (w/ TT) / Pop2 (w/ TT) / pTetR-LuxI (6 hours of incubation)
      • 100/0
      • 100/200
  • 100/400
  • 100/600
  • Results: After 6 and 24 hours: no considerable difference
  • Digestion

    • population 3 (oscillator)
    • population 2 (oscillator)
    • pBad->lsrK
    • pLsrA-LuxI-RBS-YFP
    • Term-Term (test)

    Gel Extraction

    • pBad-lsrK: Concentration: 53.8
    • pLsrA-LuxI-RBS-YFP: Concentration: 20.0

    Innoculation

    • Term-term

    Single and Double Population Projects

    August 16, 2012

    Miniprep/Glycerol Stock

    LuxR-DT

    pLux-TetR

    LasR-DT

    pLac-LacI

    Chlorabackbone

    Transformation Results

    Negative controls had too much growth; results thrown out

    Digestion/Extraction

    LuxR-DT: S and P

    pLux-TetR: X and P

    Chlorabackbone: E and P

    Ligations/Transformation

    LuxR-DT and pLux-TetR

    Chlorabackbone with Toggle Switch

    Triple Population and AND Gate Projects

    August 17

    Glycerol Stock

    • Population 3 w/ Term-Term
    • LuxS
    • LuxS

    Plasmid Isolation

    • Population 3 w/ Term-Term: Concentration: 126.7
    • LuxS: Concentration: 40.2
    • LuxS: Concentration: 52.4
    • Term-Term: Concentration: 100.8

    Digestion and Gel Extraction

    • Population 3 w/ Term-Term: Concentration: gel not used
    • LuxS: Concentration: gel not used
    • LuxS: Concentration: gel not used
  • Term-Term: Concentration: gel not used
  • Ligation

    • Vector 1: pLac
    • Insert 1: lasI-RBS-RFP
    • Vector 2: pLasR
    • Insert 2: LuxI-RBS-YFP
    • Vector 3: pbad-LsrK
    • Insert 3: pLsrA->YFP
    • Vector 4: pLac->LuxR
    • Insert 4: pLuxR-RFP
    • Vector 5: pTetR-LasR
    • Insert 5: pLasR->CFP

    Transformation

    • BBa_C0080: araC
    • BBa_J24674: pBad-TetR
    • BBa_I14015: pLas-TetO

    Single and Double Population Projects

    August 17, 2012

    Ligation

    pLas with LacI

    pTet with LasI

    Inoculations

    pLas

    LacI

    pTet

    pLac

    GFP

    RFP-LVA

    LasI

    Transformation

    Bba_K081014 Kit Plate 3 Well 12O Resistance AK; RFP

    Triple Population and AND Gate Projects

    August 18

    Innoculations

    • pTetR-LuxI
    • pLac-lasI
    • pop 2 w/TT (oscillator)
    • pop 3 w/TT (oscillator)

    Single and Double Population Projects

    August 18, 2012

    Colony Picking

    LuxR-DT-pLux-TetR: 30 colonies, 1 picked

    Toggle Switch in Chlorabackbone: 4 colonies, 1 picked

    pLas with LacI: negative control growth; results thrown out

    pTet with LasI: negative control growth; results thrown out

    RFP: 20 colonies, 1 picked

    Glycerol Stock

    LuxR-DT-pLux-TetR

    Minipreps

    LuxR-DT-pLux-TetR

    pLas

    LacI

    pTet

    pLac

    GFP

    LasI

    Triple Population and AND Gate Projects

    August 19

    Glycerol Stocks

    • pLac-lasI-RBS-RFP
    • pLasR-LuxI-RBS-YFP
    • pBad-LsrK-plsrA-LuxI-RBS-YFP
    • plac-LuxR-pLuxR-LasI-RBS-RFP
    • pTetR-lasR-pLasR-RBS-CFP
    • araC
    • pBad-TetR
    • pLas-TetO

    Oscillator Population Tests (population with induction plasmid)

    • pop2 0:1 - some fluorescence
    • pop2 75:1 - no visual difference
    • pop3 0:1 - some fluorescence
    • pop3 75:1 - no visual difference
    • pop2 and pop3 0:1 - little fluorescence
  • pop2 and pop3 75:1 - a visual increase of both RFP and CFP
  • Plasmid Isolation

    • pLac-lasI-RBS-RFP: Concentration: 115.8
    • pLasR-LuxI-RBS-YFP: Concentration: 93.1
    • pBad-LsrK-plsrA-LuxI-RBS-YFP: Concentration: 128.6
    • plac-LuxR-pLuxR-LasI-RBS-RFP: Concentration: 105.9
    • pTetR-lasR-pLasR-RBS-CFP: Concentration: 122.3
    • araC: Concentration: 114.0
    • pBad-TetR: Concentration: 315.1
    • pLas-TetO: Concentration: 102.3

    Digestion and gel extraction

    • ad-LsrK-plsrA-LuxI-RBS-YFP: Concentration:
    • plac-LuxR-pLuxR-LasI-RBS-RFP: Concentration:
    • pTetR-lasR-pLasR-RBS-CFP: Concentration:
    • araC: Concentration:
    • pBad-TetR: Concentration:
  • pLas-TetO: Concentration:
  • LasR-TT: Concentration: 10.0
  • LuxS: Concentration: 3.1
  • LuxS: Concentration: 5.5
  • Ligation

    • Vector 1: pyear
    • Insert 1: LuxS
    • Vector 2: pyear
    • Insert 2: LuxS
    • Vector 3: pTetR
    • Insert 3:lasR-TT
    • Vector 4: pLac-LuxR
    • Insert 4: TT
    • Vector 5: pLuxR
    • Insert 5: arac
    • Vector 6: pBad-TetR
  • Insert 6: TT
  • Vector 7: plasR-TetO
  • Insert 7: RBS-CFP
  • Single and Double Population Projects

    August 19, 2012

    Glycerol Stock/Plasmid Isolation

    RFP

    Toggle Switch in Chlorabackbone

    Inoculation

    RFP-LVA

    Digestion/Extraction

    pLac: S and P

    LuxR-DT-pLux-TetR: X and P

    pTet: S and P

    LasI: X and P

    LasR-DT: X and P

    LacI: S and P

    RFP: X and P

    Triple Population and AND Gate Projects

    August 20

    Colonies picked

    • pyear-LuxR: 1 picked
    • pyear-LuxR: 1 picked
    • pTet-lasR-TT: 1 picked
    • pLac-LuxR-TT: 1 picked
    • pBad-TetR-TT: 1 picked
    • pLuxR-arac: 1 picked
    • pLasR-TetO-RBS-CFP: 1 picked after being repeated

    Innoculation

    • pTetR-LuxI
    • pLac-lasI
    • pop3 w/TT
  • pop2 w/TT
  • pop3 w/o TT
  • pop2 w/o TT
  • Single and Double Population Projects

    August 20, 2012

    Ligations/Transformations

    LuxR-DT-pLux-TetR into pLac

    LasI into pTet

    LasR-DT into pTet

    RFP into LacI

    Triple Population and AND Gate Projects

    August 21

    Glycerol Stock and plasmid isolation

    • pyear-LuxR: Concentration: 40.0
    • pyear-LuxR: Concentration: 75.0
    • pTet-lasR-T: Concentration: 127.6
  • pLac-LuxR-TT: Concentration: 123.5
  • pBad-TetR-TT: Concentration: 141.0
  • pLuxR-arac: Concentration: 84.0
  • Digestion and gel extraction

    • pLasR-LuxI-YFP: gel not used
    • pTetR-lasR-TT: gel not used
    • pLuxR-araC: gel not used
    • pyear-LuxS: gel not used
    • pyear-LuxS: gel not used
    • pop1 (test)
    • pop2 (test)
    • pop3 (test)

    Innoculation

    • pyear-LuxS

    Ligation

    • Vector 1: pTet-LasR-TT
  • Insert 1: pLasR-LuxI-RBS-YFP
  • Vector 2: pLuxR-araC
  • Insert 2: lasR-TT
  • Single and Double Population Projects

    August 21, 2012

    Colony Pickings

    pLac-LuxR-DT-pLux-TetR: 24 colonies, 1 picked

    pTet-LasI: 30 colonies, 3 picked

    pTet-LasR-DT: 100 colonies, 2 picked

    LacI-RFP: 24 colonies, 2 picked

    Triple Population and AND Gate Projects

    August 22

    Digestion (test)

    • population 2 (oscillator)
      • undigested
      • EcoRI
  • XbaI
  • Spe1
  • Pst1
  • E/P
  • X/S
  • Innoculation

    • population 1 (oscillator)

    Colonies picked

    • pTetR-lasR-TT-pLasR-LuxI-RBS-YFP
    • pLuxR-araC-LasR-TT
    • pLasR-TetO-RBS-CFP (2 colonies picked)

    Transformation

    • pLac-LuxR

    Innoculation

    • pLuxR-LasI-RBS-RFP

    Population Testing Prep (pop2, pop3, pop2+pop3)

    • 2 ml of medium added to each test tube
    • 100 microliters of each population added as necessary
    • .75mL of inducing population added as necessary
      • pop2 w/ w/o inducer
      • pop3 w/ w/o inducer
      • pop2+pop3 w/ w/o inducer

    Single and Double Population Projects

    August 22, 2012

    Glycerol Stock/Miniprep

    pLac-LuxR-DT-pLux-TetR

    pTet-LasI

    pTet-LasR-DT

    LacI-RFP

    Digestion/Extraction:

    pLac-LuxR-DT-pLux-TetR: S and P

    GFP: X and P

    LacI-RFP: S and P

    pLac-LuxI: X and P

    Test Digestions

    pTet-LasI: E and P

    pTet-LasR-DT: E and P

    Ligations/Transformations

    GFP into pLac-LuxR-DT-pLux-TetR

    pLac-LuxI into LacI-RFP

    Inoculations

    RFP-LVA

    pTet-GFP

    RBS-YFP

    August 22

    Digestion (test)

    • population 2 (oscillator)
    • undigested
    • EcoRI
    • XbaI
    • Spe1
    • Pst1
    • E/P
    • X/S

    Innoculation

    • population 1 (oscillator)

    Colonies picked

    • pTetR-lasR-TT-pLasR-LuxI-RBS-YFP
    • pLuxR-araC-LasR-TT
    • pLasR-TetO-RBS-CFP (2 colonies picked)

    Transformation

    • pLac-LuxR

    Innoculation

    • pLuxR-LasI-RBS-RFP

    Population Testing Prep (pop2, pop3, pop2+pop3)

    • 2 ml of medium added to each test tube
    • 100 microliters of each population added as necessary
    • .75mL of inducing population added as necessary
      • pop2 w/ w/o inducer
      • pop3 w/ w/o inducer
      • pop2+pop3 w/ w/o inducer

    Single and Double Population Projects

    August 23, 2012

    Colony Picking

    LacI-RFP-ST-pLac-LuxI; 40 colonies, 1 picked

    LacI-RFP-ST-pLac-LuxI; 30 colonies, 1 picked

    Triple Population and AND Gate Projects

    August 23

    Glycerol Stock

    • pLasR-TetO-RBS-CFP (X2)
    • pTetR-lasR-TT-pLasR-LuxI-RBS-YFP
    • pLuxR-araC-LasR-TT

    Plasmid Isolation

    • pLasR-TetO-RBS-CFP: Concentration: 113.7
    • pLasR-TetO-RBS-CFP: Concentration: 112.0
    • pTetR-lasR-TT-pLasR-LuxI-RBS-YFP: Concentration: 167.0
    • pLuxR-araC-LasR-TT: Concentration: 104.2
    • pLac-lasI-RBS-RFP: Concentration: 37.0

    Colonies picked

    • pLac-LuxR

    Population Testing from 8/22 prep after 24 hours

    • 500 microliters from test tube of populations put in microcentrifuge tubes
      • pop2 w/: slight increase of RFP
      • pop2 w/o: some RFP
      • pop3 w/: no significant increase of CFP
  • pop3 w/o: some CFP
  • pop2+pop3 w/: no significant increase of RFP/CFP
  • pop2+pop3 w/o: some RFP/CFP
  • Results:
    • test tubes were checked after 24 hours
      • pop2 showed a slight increase in RFP production when it was induced in comparison to its uninduced control
      • both pop3 and pop2+pop3 showed no significant differences between its positive and negative controls
    • after 48 hours
      • pop2 showed increase in RFP production
      • pop3 showed no significant increase in CFP production
      • pop2+pop3 showed a sig increase in RFP production but no CFP when it was induced compared to its negative control

    Digestion

    • plac-LuxR(S/P): Concentration: 19.7
  • pTetR-LasR (E/P): Concentration: gel not used
  • pLasR-RBS-CFP (X/P): Concentration: gel not used
  • pLac-LuxR-TT (S/P): Concentration: 24.0
  • pBad-TetR-TT (S/P): Concentration: 15.4
  • pTetR-LasR-TT-pLasR-LuxI-RBS-YFP (E/P): Concentration: 12.2
  • pLuxR-araC-lasR-TT (X/P): Concentration: gel not used
  • pLasR-TetO-RBS-CFP (X/P): Concentration: 5.2
  • pLasR-TetO-RBS-CFP (X/P): Concentration: 5.2
  • pLuxR-LasI-RBS-RFP (X/P): Concentration: gel not used
  • Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
    • pLac-lasI
    • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
  • pLuxR-lasI-RBS-RFP
  • Ligation

    • Vector: pBad-TetR-TT
    • Insert: plasR-TetO-RBS-CFP

    Single and Double Population Projects

    August 24, 2012

    Plasmid Isolation

    LacI-RFP-ST-pLac-LuxI

    Digestion/Extraction

    pTet-LasR-DT

    pTet-LasI

    LacI-RFP-ST-pLac-LuxI

    pLas

    Ligation

    pTet-LasI into pLac-LuxR-DT-pLux-TetR-GFP-ST

    Triple Population and AND Gate Projects

    August 24

    Plasmid Isolation

    • pluxR-LasI-RBS-RFP: Concentration: 42.6

    Digestion

    • pLuxR-LasI-RBS-RFP (X/P)
    • pLuxR-araC-lasR-TT (X/P)

    Innoculation

    • pLuxR-LasI-RBS-RFP
    • pLuxR-araC-LasR-TT
    • pLsrA-LuxI-YFP

    Single and Double Population Projects

    August 25, 2012

    Glycerol Stock/Plasmid Isolation

    LacI-RFP-ST-pLac-LuxI

    Digestion/Extraction

    LacI-RFP-ST-pLac-LuxI

    Ligation

    LacI-RFP-ST-pLac-LuxI into pLas

    Triple Population and AND Gate Projects

    August 25

    Glycerol Stock

    • plac-LuxR
    • pBad-TetR-TT-plasR-TetO-RBS-CFP
    • pBad-TetR-TT-plasR-TetO-RBS-CFP
    • pLuxR-araC-lasR-TT

    Plasmid Isolation

    • pLuxR-LasI-RBS-RFP: Concentration: 89.1
    • pLuxR-araC-LasR-TT: Concentration: 152.9
    • pBad-TetR-TT-plasR-TetO-RBS-CFP: Concentration: 200.0
    • pBad-TetR-TT-plasR-TetO-RBS-CFP: Concentration: 156.0

    Digestion and Gel Extraction

    • pLuxR-LasI-RBS-RFP: (X/P): Concentration: 9.5
    • pLuxR-araC-LasR-TT: (X/P): gel not used
    • pBad-TetR-TT-plasR-TetO-RBS-CFP: (X/P): gel not used
    • pBad-TetR-TT-plasR-TetO-RBS-CFP: (X/P): gel not used

    Ligation

    • Vector1: pLac-LuxR-TT
    • Insert1: pLuxR-LasI-RBS-RFP
    • Vector2: pTetR-LasR
    • Insert2: pLasR-CFP
    • Vector3: pLac-LuxR-TT
    • Insert3: pLuxR-LasI-RBS-RFP

    Primer Dilution

    • I3.PsB1A2.R +661ul NFH2O -> 1:10 Dulition
    • I3.DT.F +634ul NFH2O -> 1:10 Dulition
    • I3.FT.M +700ul NFH2O -> 1:10 Dulition

    Colony PCR

    • pBad-TetR-TT-plasR-TetO-RBS-CFP
    • pLuxR-araC-LasR-TT
      • Primer 1: I3.24.SP1
      • Primer 2: I3.PSB1A2.R

    Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
    • pLac-lasI
    • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
    • pLuxR-lasI-RBS-RFP

    Triple Population and AND Gate Projects

    August 26, 2012

    Colony Picking

    pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked

    Inoculation

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP

    pLas-LacI-RFP-ST-pLac-LuxI

    Triple Population and AND Gate Projects

    August 26

    Colonies Picked

    • pLuxR-araC-LasR-TT: 1 colony picked

    Population testing

    • 2ml broth, 1ml induction, 100ul population, 30 hour incubation
      • pop1+2 (+/-): no fluorescence seen
      • pop2+3 (+/-): no fluorescence seen
      • pop1+2+3 (+/-): no fluorescence seen

    Single and Double Population Projects

    August 27, 2012

    Glycerol Stock/Plasmid Isolation

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP

    pLas-LacI-RFP-ST-pLac-LuxI

    PCR

    Add second LacO site to pLac

    Digestion/Extraction

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP

    pLas-LacI-RFP-ST-pLac-LuxI

    Triple Population and AND Gate Projects

    August 27

    Plasmid Isolation

    • pLuxR-araC-LaR-TT: Concentration: 164.3

    Digestion and Gel extraction

    • pLuxR-araC-LaR-TT (X/P): Concentration: 55.1

    Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
    • pLac-lasI
    • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
    • pLuxR-lasI-RBS-RFP

    Ligation

    • Vector1: pBad-tetR-TT
    • Insert1: pLasR-TetO-RBS-CFP
      • 0:1 20 colonies seen
      • 2:1 50 colonies seen
    • Vector2:pLac-LuxR-TT
    • Insert2: pLuXR-araC-lasR-TT
    • 0:1 5 colonies seen
    • 2:1 25 colonies seen

    Single and Double Population Projects

    August 28, 2012

    Primer Dilutions

    Triple Population and AND Gate Projects

    August 28

    Colony PCR

    • pBad-tetR-TT-pLasR-TetO-RBS-CFP
    • pLac-LuxR-TT- pLuXR-araC-lasR-TT
    • Primer 1: I3.24.SP1
    • Primer 2: I3.PSB1A2.R

    Population Testing

    • 200ul medium, 200ul induction, 4ul population, 24 hour incubation
    • pop1+2 (-): no fluorescence seen
    • pop1+2 (+): some sign of RFP/YFP
  • pop2+3 (-): no fluorescence seen
  • pop2+3 (+): no fluorescence seen
  • pop1+2+3 (-): no fluorescence seen
  • pop1+2+3 (+): no fluorescence seen
  • Ligation

    • Vector:pLac-LuxR-TT
    • Insert: pLuXR-araC-lasR-TT
      • 0:1 0 colonies seen
      • 2:1 30 colonies seen
      • 4:1 15 colonies seen

    Digestion and Gel Extraction

    • pBad-TetR-TT (S/P): Concentration: 88.3

    Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
  • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
  • Single and Double Population Projects

    August 29, 2012

    Ligation

    pLas-LacI-RFP-ST-pLac-LuxI into pTet-LasR-DT

    Triple Population and AND Gate Projects

    August 29

    Population Test Prep

    • 2ml medium, 400ul populations, 1500ul induction
      • pop1+2 (+/-)
      • pop2+3 (+/-)
      • pop1+2+3 (+/-)
    • 1ml medium, 200ul populations, 750ul induction
      • pop2+3 (+/-)

    Triple Population and AND Gate Projects

    August 30

    Ligation

    • Vector: pBad-TetR-TT
    • Insert: plasR-TetO-CFP
      • 0:1 100 Colonies seen
      • 1:1 200 Colonies seen
      • 4:1 200 Colonies seen

    Colony PCR

    • pLac-LuxR-TT-pLuXR-araC-lasR-TT (X2)
    • Primer 1: I3.24.SP1
    • Primer 2: I3.PSB1A2.R

    Colonies picked

    • pLac-LuxR-TT-pLuXR-araC-lasR-TT (X2)

    Single and Double Population Projects

    August 31, 2012

    Colony picking

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked

    PCR Reaction

    Add LacO binding site to pLac; 65.2 degrees found to be optimal temperature for elongation

    Transformation

    pLac-LacO

    Triple Population and AND Gate Projects

    August 31

    Glycerol Stock and Plasmid Isolation

    • pLac-LuxR-TT-pLuXR-araC-lasR-TT: Concentration: 115.2
    • pLac-LuxR-TT-pLuXR-araC-lasR-TT: Concentration: 77.7

    Digestion and Gel Extraction

    • pLac-LuxR-TT-pLuXR-araC-lasR-TT (S/P)
  • pLac-LuxR-TT-pLuXR-araC-lasR-TT (S/P)
  • Colony PCR

    • pBad-TetR-TT-pLasR-TetO-CFP (X2)
    • Primer 1: I3.24.SP1
    • Primer 2: I3.PSB1A2.R

    Population Test Results

    • 2ml medium, 400ul populations, 1500ul induction
      • pop1+2 (+/-)
      • pop2+3 (+/-)
      • pop1+2+3 (+/-)
    • 1ml medium, 200ul populations, 750ul induction
      • pop2+3 (+/-)

    Single and Double Population Projects

    September 1, 2012

    Glycerol Stock/Plasmid Isolation

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    Colony Picking

    pLac-LacO

    Inoculations

    pLac-TetR

    pLac-TetR-RBS-RFP

    pTet-LacI

    pTet-RBS-GFP-T

    Triple Population and AND Gate Projects

    September 1

    Ligations

    • Vector1: pLac-LuxR-TT
    • Insert1: pLuxR-araC-LasR-TT
    • Vector2: pLasR
    • Insert2.1: LuxS
    • Insert2.2 araC
    • Vector3: TT
  • Insert3: pLsrA-LuxI-RBS-YFP
  • Vector4: pLuxR
  • Insert4: TetR
  • Transformation

    • BBa_C0012: LacI
    • BBa_K091002: LsrK

    Innoculation

    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)

    Single and Double Population Projects

    September 2, 2012

    Glycerol Stock/Plasmid Isolation

    pLac-LacO

    Single and Double Population Projects

    September 3, 2012

    Plasmid Isolation

    pLac-TetR

    pLac-TetR-RBS-RFP

    pTet-LacI

    pTet-RBS-GFP-T

    Digestion/Extraction

    pLac-TetR

    pLac-TetR-RBS-RFP

    pTet-LacI

    pTet-RBS-GFP-T

    Triple Population and AND Gate Projects

    September 3

    Glycerol Stock

    • pLac-LuxR-TT-pLuxR-araC-LasR-TT
    • pBad-TetR-TT-pLas-TetO-CFP

    Plasmid Isolation

    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
    • pLac-LuxR-TT-pLuxR-araC-lasR-TT
    • pBad-TetR-TT-pLas-TetO-CFP

    Digestion

    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator) (X/P)
    • pBad-TetR-TT-pLas-TetO-CFP (X/P)
    • pLac-LuxR-TT-pLuxR-araC-lasR-TT (S/P)

    Innoculation

    • pyear-luxS (Inducer pop1)
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
  • pTetR-LuxI (Inducer pop2)
  • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
  • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
  • Colony PCR for I3-98-2 and I4-1-2-

    Digestion

    • TT-pLuxR-LasI-RFP (X/P)
    • pLac-LuxR (S/P)

    Single and Double Population Projects

    September 4, 2012

    Inoculations

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI (Atc 10 microliters)

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI (IPTG 10 microliters)

    Triple Population and AND Gate Projects

    September 4

    Plasmid Isolation

    • pBad-TetR-TT-pLasR-TetO-CFP: Concentration: 190.4

    Digestion

    • pBad-TetR-TT-pLasR-TetO-CFP (X/P): Concentration: 20.5

    Colonies picked from I4-1-2

    Single and Double Population Projects

    September 5, 2012

    Inoculations

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    1 with Atc

    1 with IPTG

    1 with No induction

    Triple Population and AND Gate Projects

    September 5

    Glycerol Stock and Plasmid Isolation

    • pLasR-LuxS
    • pLasR-araC
    • TT-pLsrA-LuxI-RBS-YFP
  • pLuxR-TetR
  • LacI
  • LsrK
  • Digestion and Gel Extraction

    • pLasR-LuxS
    • pLasR-araC
    • TT-pLsrA-LuxI-RBS-YFP
    • pLuxR-TetR
    • LacI
    • LsrK

    Innoculation

    • pLac
    • LasI-RFP

    Single and Double Population Projects

    September 6, 2012

    Sequencing

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    pLac-LacO

    RFP-LVA

    Inoculations

    Chlorabackbone

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    1 with Atc

    1 with IPTG

    1 with No induction

    Digestion/Extraction

    Chlorabackbone

    Triple Population and AND Gate Projects

    September 6

    Plasmid Isolation and Glycerol Stock

    • pLac
    • LasI-RFP
    • pLac-LuxR-TT-pLuxR-araC-LasR-TT

    Digestion and Gel Extraction

    • pLac
    • LasI-RFP
    • pLac-LuxR-TT-pLuxR-araC-LasR-TT

    Ligation

    • Vector1:pLac-LuxR-TT-pLuxR-araC-LasR-TT
    • Insert1: pBad->>CFP
    • Vector2: pLsrA
    • Insert2: LacI
    • Vector3: pLasR-LuxS
  • Insert3: RBS-CFP
  • Vector4: Term-Term
  • Insert4: pLuxR-TetR
  • Single and Double Population Projects

    September 7, 2012

    Inoculation

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP

    pLac-RBS-GFP-T

    pTet-RBS-GFP-T-pLac-TetR

    pLac-RBS-GFP-T-pTet-LacI

    RFP-LVA

    pLac-LacO

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI

    pTet-LasI

    pLac-LuxR-DT-pLux-TetR

    LuxR-DT-pLux-TetR

    LuxR-DT

    pLux-TetR

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    pLas-LacI-RFP-ST-pLac-LuxI

    LacI-RFP-ST-pLac-LuxI

    LacI-RFP-ST

    pLac-LuxI

    pTet-LasR-DT

    LasR-DT

    pLac-LacO

    pTet-LacI

    RBS-GFP-ST

    Triple Population and AND Gate Projects

    September 7

    Test Digestions

    • pLac
    • LasI-RFP
  • pLac-LuxR-TT-pLuxR-araC-LasR-TT
  • Innoculation

    • Term-Term

    Single and Double Population Projects

    September 8, 2012

    Time-Lapse Experiment to observe toggle switch

    Plasmid Isolation

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP

    pLac-RBS-GFP-T

    pTet-RBS-GFP-T-pLac-TetR

    pLac-RBS-GFP-T-pTet-LacI

    RFP-LVA

    pLac-LacO

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI

    pTet-LasI

    pLac-LuxR-DT-pLux-TetR

    LuxR-DT-pLux-TetR

    LuxR-DT

    pLux-TetR

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    pLas-LacI-RFP-ST-pLac-LuxI

    LacI-RFP-ST-pLac-LuxI

    LacI-RFP-ST

    pLac-LuxI

    pTet-LasR-DT

    LasR-DT

    pTet-LacI

    GFP

    Ligations

    pLac-TetR into Chlora

    pLac-RBS-GFP-T into Chlora

    pTet-RBS-GFP-T into Chlora

    pTet-LacI into Chlora

    ]

    Digestion/Extraction

    GFP

    pLac-LacO

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP

    pLac-RBS-GFP-T

    pTet-RBS-GFP-T-pLac-TetR

    pLac-RBS-GFP-T-pTet-LacI

    RFP-LVA

    pLac-LacO

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI

    pTet-LasI

    pLac-LuxR-DT-pLux-TetR

    LuxR-DT-pLux-TetR

    LuxR-DT

    pLux-TetR

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

    pLas-LacI-RFP-ST-pLac-LuxI

    LacI-RFP-ST-pLac-LuxI

    LacI-RFP-ST

    pLac-LuxI

    Triple Population and AND Gate Projects

    September 8

    Colonies Picked

    • 14-7-5
    • 14-7-7
    • 14-8-2

    Single and Double Population Projects

    September 9, 2012

    Colony Picking

    pLac-TetR, 1 colony picked

    pLac-RBS-GFP-T, 1 colony picked

    pTet-LacI, 1 colony picked

    Ligation

    pLac-LacO-GFP

    Triple Population and AND Gate Projects

    September 9

    Glycerol Stock and Plasmid Isolation

    • pLac-LuxR-TT-pLuxR-araC-LasR-TT-pBad-TetR-TT-pLasR-TetO-CFP
    • pLsrA-LacI
    • pLasR-LuxS-RBS-CFP

    Digestion and Gel Extraction

    • pLac-LuxR-TT-pLuxR-araC-LasR-TT-pBad-TetR-TT-pLasR-TetO-CFP
  • pLsrA-LacI
  • pLasR-LuxS-RBS-CFP
  • Ligations

    • Vector1: Term-Term
    • Insert1-1: pLsrA-LacI
    • Insert1-2: pLuxR-TetR
    • Insert1-3: pLsrA-LuxI-RBS-YFP
    • Insert1-4: pLasR-LuxS-RBS-CFP
    • Insert1-5: pLasR-araC
    • Vector2: pLac
    • Insert2: 13-12-8

    Single and Double Population Projects

    September 10, 2012

    Glycerol Stock/Miniprep

    pLac-TetR

    pLac-RBS-GFP-T


    pTet-LacI

    Gel Extraction

    pLac-LacO-GFP

    pTet-LacI

    Ligation

    pTet-LacI into pLac-LacO-RBS-GFP-ST

    pLac-RBS-GFP-T-pTet-LacI into chlora backbone

    Triple Population and AND Gate Projects

    September 10

    Colonies Picked

    • I4-11-2
    • I4-11-3
    • I4-11-4
    • I4-11-5
    • I4-11-6
    • I4-8-4
  • I4-8-5
  • I4-8-6
  • Plasmid Isolation

    • pLac
    • LuxR

    Single and Double Population Projects

    September 11, 2012

    PCR

    pLac-LacO

    pLac-LacO x2

    Single and Double Population Projects

    September 12, 2012

    Digestion/Gel Extraction

    pTet-LacI-pLac-LacO-RBS-GFP-ST

    Experiments

    Toggle with 20 micro liters IPTG

    Toggle with 40 micro liters ATc

    Strain 1 of dual population toggle with inducer strain

    Strain 2 of dual population toggle with inducer strain

    Ligation

    pLac-LacO-RBS-GFP-ST-pTet-LacI into chlora backbone

    Triple Population and AND Gate

    September 13

    Glycerol Stock and Plasmid Isolation

    • I4-8-4
    • I4-8-5
    • I4-8-6
    • I4-11-2
    • I4-11-3
    • I4-11-4
    • I4-11-5
  • I4-11-6
  • I4-13-1
  • I4-13-2
  • Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
    • pLac-lasI
    • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)

    Ligation

    • Vector: Const. Promoter
    • Insert1-1: I3-28-4
    • Insert1-2: I4-6-6
    • Insert1-3: I4-16-2
    • Vector2: TT-pLasR-LuxS-RBS-CFP
  • Insert2: TT-pLuxR-TetR
  • Vector3: pLac
  • Insert3: LuxR
  • Vector4: pLuxR
  • Insert4: LasI-RFP
  • Ligations for Chlora

    • I4-14-7
    • I4-14-8
    • I4-14-10

    Transformation

    • I4-18-1
    • I4-18-2
    • I4-18-3
    • I401804

    Innoculation

    • I3-28-2
  • I3-30-4
  • I3-11-1
  • I3-46-4
  • Single and Double Population Projects

    September 14, 2012

    Ligation

    pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP into Chlora backbone

    pLac-RBS-GFP-T into Chlora backbone

    pTet-RBS-GFP-T-pLac-TetR into Chlora backbone

    pLac-RBS-GFP-T-pTet-LacI into Chlora backbone

    RFP-LVA into Chlora backbone

    pLac-LacO into Chlora backbone

    pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI into Chlora backbone

    pTet-LasI into Chlora backbone

    pLac-LuxR-DT-pLux-TetR into Chlora backbone

    LuxR-DT-pLux-TetR into Chlora backbone

    LuxR-DT into Chlora backbone

    pLux-TetR into Chlora backbone

    pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI into Chlora backbone

    pLas-LacI-RFP-ST-pLac-LuxI into Chlora backbone

    LacI-RFP-ST-pLac-LuxI into Chlora backbone

    LacI-RFP-ST into Chlora backbone

    pLac-LuxI into Chlora backbone

    pLac-LacO x2-RBS-GFP-ST-pTet-LacI

    Glycerol Stock/Plasmid Isolation

    pLac-LacO-GFP

    Digestion

    pLac-LacO-GFP

    pTet-LacI

    pLac-LacO x2-RBS-GFP-ST-pTet-LacI

    Inoculation

    pLac-GFP-pTet-LacI

    Triple Population and AND Gate

    September 15

    Plasmid Isolation

    • I4-16-4 CP-LasR
    • I4-16-5 CP-LsrK
    • I4-16-6 CP-LuxR
    • I4-17-4 TT-pLasR->>TetR
    • I4-17-6 pLac-LuxR
    • I4-17-8 pLuxR-LasI-RFP

    Colonies picked

    • I4-19-19
    • I4-22-8
    • I4-22-9
    • I4-21-2

    Digestion

    • I4-16-4
  • I4-16-5
  • I4-16-6
  • I4-17-4
  • I4-17-6
  • I4-17-8
  • Ligations

    • Vector1: pTetR-LasR
    • Insert1: TT-pLasR-LuxS-RFP-TT-pLuxR-TetR
    • Vector2: Term-Term
    • Insert2: pLac-LuxR
    • Vector3: pLuxR-LasII-RFP
    • Insert3: TT-pLsrA-LacI

    Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
  • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
  • pLac-lasI
  • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
  • Triple Population and AND Gate

    September 18

    Glycerol Stock and Plasmid Isolation

    • pTetR-LasR-TT-pLasR-LuxS-CFP-TT-pLuxR-TetR
    • TT-pLac-LuxR
    • pLuxR-LasI-RFP-TT-pLsrA-LacI

    Digestion and Gel Extraction

    • I4-10-7
    • I4-25-14
    • I4-25-16
    • I4-25-18

    Ligation

    • Vector1: CP-LasR
    • Insert1: TT
    • Vector2: TT-pLsrA-LuxI-YFP
    • Insert 2: TT-pLasR-araC
  • Vector3: TT
  • Insert3.1: pTetR->>TetR
  • Insert3.2: pLuxR->>LacI
  • Vector4: CP-LsrK
  • Insert4: TT-pLac-LuxR
  • Innoculation

    • Pop3 AND Gate
    • Pop2 AND Gate
    • Pop1 AND Gate

    Testing AND Gate

    • Pop2 and 3
    • Pop1 and 3
    • Pop 1 2 3

    Triple Population and AND Gate

    September 19

    Plate Experiments for AND Gate

    Triple Population and AND Gate

    September 20

    Glycerol Stock and Plasmid Isolation

    • Cp-LasR-TT
    • TT-pLsrA->>araC
    • TT-pTetR->>TetR
    • CP-LsrK->>LuxR
    • TT-pLuxR->>LacI

    Digestions (repeated 3X)

    • Cp-LasR-TT
    • TT-pLsrA->>araC
    • TT-pTetR->>TetR
    • CP-LsrK->>LuxR
    • TT-pLuxR->>LacI

    Triple Population and AND Gate

    September 22

    Ligations (Repeated)

    • Vector1: CP-LasR
    • Insert1: TT
    • Vector2: TT-pLsrA-LuxI-YFP
    • Insert 2: TT-pLasR-araC
    • Vector3: TT
    • Insert3.1: pTetR->>TetR
    • Insert3.2: pLuxR->>LacI
    • Vector4: CP-LsrK
    • Insert4: TT-pLac-LuxR

    Single and Double Population Projects

    September 22, 2012

    Single toggle experiment - No induction at start, check every 6 hours, induce with IPTG after first 6 hours, and induce with ATc in new tube after 12 Hours

    Triple Population and AND Gate

    September 22

    Ligations (Repeated)

    • Vector1: CP-LasR
    • Insert1: TT
    • Vector2: TT-pLsrA-LuxI-YFP
    • Insert 2: TT-pLasR-araC
    • Vector3: TT
    • Insert3.1: pTetR->>TetR
    • Insert3.2: pLuxR->>LacI
    • Vector4: CP-LsrK
    • Insert4: TT-pLac-LuxR

    Triple Population and AND Gate

    September 23

    Digestions

    • Cp-LasR-TT
    • TT-pLsrA->>araC
    • TT-pTetR->>TetR
    • CP-LsrK->>LuxR
    • TT-pLuxR->>LacI

    Innoculations for AND Gate

    • Pop1
    • Pop2
    • Pop3

    Testing AND Gate

    • Pop 1 3
    • Pop 2 3
    • Pop 1 2 3

    Innoculation

    • pyear-luxS
    • pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
    • pTetR-LuxI
    • pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
    • pLac-lasI
    • pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)

    Triple Population and AND Gate

    September 23

    Plasmid Isolation

    • TT-pLsrA-LuxI->>araC
    • TT-pTetR-TetR
    • CP-LsrK->>LuxR
    • TT-pLuxR-LacI

    Digestions and Gel Extraction

    • TT-pLsrA-LuxI->>araC
    • TT-pTetR-TetR
    • CP-LsrK->>LuxR
    • TT-pLuxR-LacI