Team:NYU Gallatin/Modeling

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<li class="menu-312"><a href="/Team:NYU_Gallatin/Safety" title="Our commitment to safety.">Safety</a></li>
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<li class="menu-313"><a href="/Team:NYU_Gallatin/Attributions" title="Give credit where credit is due.">Attributions</a></li>
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<li class="menu-306 last"><a href="https://igem.org/Team.cgi?year=2012&team_name=NYU_Gallatin" title="Official iGEM 2012 profile.">Profile</a></li>
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<li class="menu-306 last"><a href="https://igem.org/Team.cgi?year=2012&amp;team_name=NYU_Gallatin" title="Official iGEM 2012 profile.">Profile</a></li>
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     <div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even"><p></p><center><img src="http://farm9.staticflickr.com/8175/8052145533_c321d3ac67_z.jpg" /></center>
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     <div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even"><h1>Bio Synthetic Pathways</h1>
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<p></p><center><img src="http://farm9.staticflickr.com/8175/8052145533_c321d3ac67_z.jpg" /></center>
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<h1>Codonizer</h1>
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<p>To ensure that our modeling worked, we ran our sequences through a custom developed codon optimizer.  Try it our yourself below!  Drop in a chunk of DNA data and click "Optimize Codons" to have your sequence optimized for the acetobacter preferred codons.</p>
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<p><textarea name="codons" id="old-codons" rows="10" cols="80"></textarea><input type="button" id="optimize-codons" value="Optimize Codons" /></p>
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<div id="new-codons"></div>
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<p>Upon completion of the iGEM competition we would like to expand our Codonizer software to support other strains.  A mockup of what this tools will look like is provided below.</p>
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<p></p><center><img src="http://farm9.staticflickr.com/8460/8052465891_a67ab6b567.jpg" /></center>
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<script type="text/javascript" src="https://static.igem.org/mediawiki/2012/2/2e/Aseatobacter-Javascript_Codonizer.txt"></script></div></div></div>  </div>
    
    

Latest revision as of 03:09, 4 October 2012

Modeling

Bio Synthetic Pathways

Codonizer

To ensure that our modeling worked, we ran our sequences through a custom developed codon optimizer. Try it our yourself below! Drop in a chunk of DNA data and click "Optimize Codons" to have your sequence optimized for the acetobacter preferred codons.

Upon completion of the iGEM competition we would like to expand our Codonizer software to support other strains. A mockup of what this tools will look like is provided below.

Retrieved from "http://2012.igem.org/Team:NYU_Gallatin/Modeling"