Team:Johns Hopkins-Software/Compatibility
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<link rel="stylesheet" href="https://2012.igem.org/Team:Johns_Hopkins-Software/Templates/cssindex?action=raw&ctype=text/css" type="text/css"/> | <link rel="stylesheet" href="https://2012.igem.org/Team:Johns_Hopkins-Software/Templates/cssindex?action=raw&ctype=text/css" type="text/css"/> | ||
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Overview | Overview | ||
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Using biojava and libSBOLj libraries, Autogene is capable of importing and exporting genetic sequences in the following file formats:<br> | Using biojava and libSBOLj libraries, Autogene is capable of importing and exporting genetic sequences in the following file formats:<br> | ||
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<li>FASTA</li> | <li>FASTA</li> | ||
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<li>SBOL</li> | <li>SBOL</li> | ||
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*The genbank files Autogene can import/export are also ApE compatible. <a href="http://biologylabs.utah.edu/jorgensen/wayned/ape/">ApE </a> (A plasmid Editor) is a synthetic biology tool that outputs files in a unique genbank format that contains information on annotation color. | *The genbank files Autogene can import/export are also ApE compatible. <a href="http://biologylabs.utah.edu/jorgensen/wayned/ape/">ApE </a> (A plasmid Editor) is a synthetic biology tool that outputs files in a unique genbank format that contains information on annotation color. | ||
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Future Work | Future Work | ||
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We plan on increasing the amount of file options for Autogene, such as GFF3, Embl, and DDBJ. | We plan on increasing the amount of file options for Autogene, such as GFF3, Embl, and DDBJ. | ||
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