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Team:Paris-Saclay/Project/Notebook/Week 12
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| - | | style="width: 50%;"| To prepare the Gibson A construction, BBa_K098995 is amplified by PCR. To verify the Gibson, a 1% Agarose gel Electrophoresis is made. We are expecting a band at | + | | style="width: 50%;"| To prepare the Gibson A construction, BBa_K098995 is amplified by PCR. To verify the Gibson, a 1% Agarose gel Electrophoresis is made. We are expecting a band at size 975 bp. The matrix plasmid is a control. |
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PCR program used: | PCR program used: | ||
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| - | | style="width: 50%;"|PCR on the colonies obtained after the Gibson of the B construction. The 880bp of BBa_K098995 is amplified to verify that it has been well integrated in the plasmid pSB1A2. The PCR are made by | + | | style="width: 50%;"|PCR on the colonies obtained after the Gibson of the B construction. The 880bp of BBa_K098995 is amplified to verify that it has been well integrated in the plasmid pSB1A2. The PCR are made by pools of 5 colonies from A to I, with a positive and a negative control. A 1% Agarose gel Electrophoresis is made. We are expecting a band at 975bp. |
|[[File:Week12-3.jpg|300px]] | |[[File:Week12-3.jpg|300px]] | ||
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Latest revision as of 00:41, 27 September 2012
Week 12
20th August
- The 63 colonies obtained after the Gibson for the B construction have been streaked in order to isolate clones. The Petri dishes composed of LB + Ampicilline are placed at 42°C. The #11 colony is the one that turned red.
| To prepare the Gibson A construction, BBa_K098995 is amplified by PCR. To verify the Gibson, a 1% Agarose gel Electrophoresis is made. We are expecting a band at size 975 bp. The matrix plasmid is a control. |  |
PCR program used:
21th August
- Digestion by DPNI of BBa_K098995 in order to degrade the matrix plasmid.
- Miniprep of the BBa_K098995
22th August
| PCR on the colonies obtained after the Gibson of the B construction. The 880bp of BBa_K098995 is amplified to verify that it has been well integrated in the plasmid pSB1A2. The PCR are made by pools of 5 colonies from A to I, with a positive and a negative control. A 1% Agarose gel Electrophoresis is made. We are expecting a band at 975bp. | 
|
PCR program used:
23rd August
| Individual PCR of the 15 candidates + #11 after the PCR on colonies. This time, all the fragments of the Gibson B construction are amplified. Visualization on 0.8% Agarose gel Electrophoresis | 
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PCR program used:
- Streak of the #11 to test if it can grow at 25°C, since we saw that:
- At 37°C, it forms small red colonies
- At 42°C, it forms slowly small red colonies
- At 30°C, it forms normal white colonies
24th August
- Miniprep of the 15 candiates + #11.
- Digestion by AseI of the 15 candidates + #11 in order to verify that each colony has the plasmid with the Gibson B construction.
- PCR to amplify the 880bp end of BBa_K098995 enclosed in the 15 candidate colonies + #11.
PCR program used:
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