Team:Amsterdam/achievements/stochastic model definition

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==Stochastic model definition==
==Stochastic model definition==
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This is the definition of the stochastic model which is discussed on [[Team:Amsterdam/data/background_activity|this page]].
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<tr><th>Reaction</th><th>Propensity</th></tr>
<tr><th>Reaction</th><th>Propensity</th></tr>
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<tr><th>Parameter</th><th>Value</th></tr>
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<tr><th>Species name</th><th>Initial value</th></tr>
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Latest revision as of 03:07, 27 September 2012

Stochastic model definition

This is the definition of the stochastic model which is discussed on this page.

ReactionPropensity

$ \text{R}_{2}\text{O} \rightarrow \text{R}_{2}\text{O} + \text{M}_{\text{FP}} $

$ \text{R}_{2}\text{O} \cdot \text{k}_{\text{s0MFP}} $

$ \text{M}_{\text{FP}} \rightarrow \text{M}_{\text{FP}} + \text{FP} $

$ \text{k}_{\text{sFP}} \cdot \text{M}_{\text{FP}} $

$ \oslash \rightarrow \text{PlasU} $

$ k_{\text{Plas}} \cdot (\frac{\text{PlasM} + \text{PlasU}}{Ca})$

$ \text{FP} \rightarrow \oslash $

$ \lambda_{\text{FP}} \cdot \text{FP} $

$ \text{M}_{\text{FP}} \rightarrow \oslash $

$ \lambda_{\text{MFP}} \cdot \text{M}_{\text{FP}} $

$ \text{PlasU} \rightarrow \text{PlasM} $

$ \frac{\text{k}_{\text{cFP}}}{\text{N}_{\text{A}} \cdot \text{V}_{\text{Ecoli}}} \cdot \text{FP} \cdot \text{PlasU} $

$ \text{PlasU} \rightarrow \oslash $

$ \lambda_{\text{Plas}} \cdot \text{PlasU} $

$ \text{PlasM} \rightarrow \oslash $

$ \lambda_{\text{Plas}} \cdot \text{PlasM} $

ParameterValue

$ \text{Ca} $

$ 200 $

$ \text{N}_{\text{A}} $

$ 6.0221367 $

$ \text{V}_{\text{Ecoli}} $

$ 8 $

$ \text{k}_{\text{s0MFP}} $

$ 0.01$

$ \text{k}_{\text{sFP}} $

$ 30 $

$ \lambda_{\text{MFP}} $

$ 0.462 $

$ \lambda_{\text{FP}} $

$ 0.2 $

$ \text{k}_{\text{cFP}} $

$ 0.0005 $

$ \text{k}_{\text{Plas}} $

$ 0.00866434 $

$ \lambda_{\text{Plas}} $

$ 0.00866434 $

Species nameInitial value

$ \text{PlasM} $

$ 0 $

$ \text{PlasU} $

$ 200 $

$ \text{FP} $

$ 0 $

$ \text{M}_{\text{FP}} $

$ 0 $


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