Team:Paris-Saclay/Project/Notebook/Week 13
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*Miniprep of colonies #11 and #21 | *Miniprep of colonies #11 and #21 | ||
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*Gibson assembly for the A construction (BBa_K098995+BBa_K274100+ BBa_J61048+Plasmid pSB1A2) and for the C construction (BBa_K115017 + BBa_C0051+166bp end of BBa_K098995+BBa_K274100+ BBa_J61048+Plasmid pSB1A2). Transformation of DH5αZ1 competent cell with construction A or construction C. Petri Dishes have been placed at 37°C for 1 day (construction A) or 2 days (construction C) | *Gibson assembly for the A construction (BBa_K098995+BBa_K274100+ BBa_J61048+Plasmid pSB1A2) and for the C construction (BBa_K115017 + BBa_C0051+166bp end of BBa_K098995+BBa_K274100+ BBa_J61048+Plasmid pSB1A2). Transformation of DH5αZ1 competent cell with construction A or construction C. Petri Dishes have been placed at 37°C for 1 day (construction A) or 2 days (construction C) | ||
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Latest revision as of 00:45, 27 September 2012
Week 13
27th August
Visualization by electrophoresis of the amplification of 880bp end of BBa_K098995 by PCR from the 15 candidate colonies and #11. Use of a 0.8% Agarose gel. We are expecting a band at 880 bp | |
Digestion by AseI of the 15 candidate colonies and #11. Visualization by electrophoresis on a 0.8% Agarose gel |
- Miniprep of colonies #11 and #21
- Plasmids of colonies #11 and #21 have been sent for sequencing
Amplification of BBa_K274100, BBa_K115017 and BBa_J61048 by PCR using the colony #11. Visualization by electrophoresis on a 1% Agarose gel for BB3 and BB4 and a 2% Agarose gel for BB2. We are expecting a band at 123 bp for BBa_K115017, 133 bp for BBa_J61048 and 3408bp for BBa_K274100. |
PCR program used for each biobrick amplification:
- Gibson assembly for the A construction (BBa_K098995+BBa_K274100+ BBa_J61048+Plasmid pSB1A2) and for the C construction (BBa_K115017 + BBa_C0051+166bp end of BBa_K098995+BBa_K274100+ BBa_J61048+Plasmid pSB1A2). Transformation of DH5αZ1 competent cell with construction A or construction C. Petri Dishes have been placed at 37°C for 1 day (construction A) or 2 days (construction C)
28th august
Digestion by AseI and NotI of the colonies #11, #21 and the linear plasmid.
- AseI:
- 1 restriction site in the Plasmid pSB1A2
- 1 restriction site in the 880bp end of BBa_K098995
- NotI:
- 1 restriction site either side of the B construction
Visualization by electrophoresis on a 0.8% Agarose gel | |
Amplification by PCR of the 880bp end of BBa_K098995. Visualization by electrophoresis on a 0.8% Agarose gel. We are expecting a band at 880bp. |
PCR program used:
- Amplification by PCR of the 880bp end of BBa_K098995 + BBa_K115017 contained in the colonies #11 and #21. PCR program used:
- Miniprep of the colony #11.
- Gibson assembly of the construction B (BBa_K115017+880bp end of BBa_K098995+ BBa_K274100+ BBa_J61048+ pSB1A2). Transformation of competent cells DH5α with the construction.
- Liquid culture of the colony #11 and a control colony 11811 to prepare a test of temperature range.
Digestion of the colony #11 by AseI+HindIII. Visualization by electrophoresis on a 0.8% Agarose gel. |
29th August
PCR on colonies to verify the construction A and C obtained by Gibson assembly. Amplification of BBa_K098995 for A and BBa_C0051 for C. Visualization by electrophoresis on a 0.8% Agarose gel. We are expecting a band at 935bp for A and 750pb for C. |
- Miniprep of the construction A and the construction C.
- Performing tests on a range of temperatures with the liquid culture of the colony #11 and the control 11811. On Petri Dishes LB+ agar+Ampicilline. 7 different temperatures have been tested: 25°C, 28°C, 30°C, 35°C, 37°C, 40°C and 42°C.
- The remaining of liquid cultures has been centrifuged to see the residue.
30th and 31th august
- Amplification of BBa_K274100 and BBa_J61048 of the colonies containing the construction A or the construction C. Visualization by electrophoresis on a 0.8% Agarose gel for BBa_K274100 and a 2% Agarose gel for BBa_J61048.
PCR program used:
- Glycerol stock of the colonies #11 and #21.
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