Team:Uppsala University/Parts

From 2012.igem.org

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<a href="#favorite">Favorite Parts</a> | <a href="#submitted">Submitted Parts</a>  
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<a href="#favorite">Favorite</a> | <a href="#submitted">Parts</a> | <a href="#backbones">Backbones</a>
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<tr>
<tr>
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<td valign="top">
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<td>
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<table>
<p>
<p>
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<h3><b>Small RNA Scaffold</b></h3>
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<a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864440" style="margin-left:10px">BBa_K864440</a> - <b>J23101-Spot42</b>:
 +
<p>This is the native spot42 small RNA constitutively expressed by BBa_J23101 and is useful as a template for generating a randomized library of small RNAs for downregulation of any gene of interest.</p>
 +
 +
<br>
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<h3><b>Reporter System</b></h3>
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<a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864444" style="margin-left:10px">BBa_K864444</a> - <b>RFP-linker-SYFP</b>:
 +
<p>This part can be used to insert any 5’UTR of a gene of interest to screen for downregulation of this gene by artificial small RNAs. This reporter reporter system comes with a fluorescent marker that is downregulated by any small RNA targeting the 5'UTR of the gene of interest.</p>
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 +
<br>
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<h3><b>New low-copy backbone</b></h3>
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<a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864001" style="margin-left:10px">BBa_K864001</a> - <b>pSB4C15</b>:
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<p>This is a new BioBrick standard vector with low copy pSC101 replication origin, especially usable for Lambda Red recombineering in E coli.</p>
 +
 +
<br>
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<h3><b>Blue Chromoprotein</b></h3>
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<a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864401" style="margin-left:10px">BBa_K864401</a> - <b>aeBlue</b>:
 +
<p>aeBlue is a blue chromoprotein extracted from the basal disk of a beadlet anemone Actinia equina. The protein has an absorption maximum at 597nm and a deep blue colour. The protein aeBlue has significant sequence homologies with proteins in the GFP family.</p>
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<br>
</p>
</p>
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</table>
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</td>
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</tr>
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<tr>
<tr>
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</tr>
</tr>
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<tr>
<tr>
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<th scope="col">Partnumber</th>
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<td colspan="2">
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<th scope="col">Partnumber</th>
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<table id="sp" width="400" cellpadding="2" cellspacing="1" class="partstable">
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<th scope="col">Partnumber</th>
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<thead>
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<tr>
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<th scope="col">BioBrick ID</th>
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<th scope="col">Type</th>
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<th scope="col">Name</th>
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<th scope="col">Description</th>
</tr>
</tr>
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</thread>
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</thead>
<tbody>
<tbody>
<tr>
<tr>
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<td>Name1</td>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864100">BBa_K864100</a></td>
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<td>Name2</td>
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<td>Coding</td>
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<td>Name3</td>
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<td>SYFP2</td>
 +
<td>Yellow fluorescent protein</td>
</tr>
</tr>
<tr>
<tr>
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<td>Name1</td>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864101">BBa_K864101</a></td>
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<td>Name2</td>
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<td>Composite</td>
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<td>Name3</td>
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<td>B0032 - SYFP2</td>
 +
<td>Yellow fluorescent protein</td>
 +
</tr>
 +
<tr>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864102">BBa_K864102</a></td>
 +
<td>Composite</td>
 +
<td>B0034 - SYFP2</td>
 +
<td>Yellow fluorescent protein</td>
 +
</tr>
 +
<tr>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864150">BBa_K864150</a></td>
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<td>Composite</td>
 +
<td>cat-sacB</td>
 +
<td>Selection/counter-selection casette</td>
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</tr>
 +
<tr>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864200">BBa_K864200</a></td>
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<td>Coding</td>
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<td>MarR</td>
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<td>Multi-resistant repressor</td>
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</tr>
 +
<tr>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864201">BBa_K864201</a></td>
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<td>Coding</td>
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<td>LexA</td>
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<td>Repressor of the E. coli SOS-system</td>
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</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864202">BBa_K864202</a></td>
 +
<td>Coding</td>
 +
<td>MarR(G95S)</td>
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<td>Point-mutated for higher repression</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864203">BBa_K864203</a></td>
 +
<td>Coding</td>
 +
<td>LexA(G85D)</td>
 +
<td>Point-mutated for higher repression</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864204">BBa_K864204</a></td>
 +
<td>Coding</td>
 +
<td>OmpF</td>
 +
<td>Outer membrane porin</td>
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</tr>
 +
<tr>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864680">BBa_K864680</a></td>
 +
<td>Coding</td>
 +
<td>TetM</td>
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<td>Ribosome protection protein</td>
 +
</tr>
 +
<tr>
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<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K592012">BBa_K592012</a></td>
 +
<td>Coding</td>
 +
<td>eforRed</td>
 +
<td>Red/pink chromoprotein</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864401">BBa_K864401</a></td>
 +
<td>Coding</td>
 +
<td>aeBlue</td>
 +
<td>Blue chromoprotein</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864402">BBa_K864402</a></td>
 +
<td>Composite</td>
 +
<td>J23110 - B0034 - eforRed</td>
 +
<td>Red/pink chromoprotein</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864403">BBa_K864403</a></td>
 +
<td>Composite</td>
 +
<td>J23110 - B0034 - aeBlue</td>
 +
<td>Blue chromoprotein</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864404">BBa_K864404</a></td>
 +
<td>Composite</td>
 +
<td>J23110 - B0034 - cjBlue</td>
 +
<td>Turquoise chromoprotein</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864440">BBa_K864440</a></td>
 +
<td>Scaffold</td>
 +
<td>J23101 - Spot42</td>
 +
<td>Scaffold for sRNAs</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864444">BBa_K864444</a></td>
 +
<td>Measurement</td>
 +
<td>RFP - linker - SYFP2</td>
 +
<td>Screening system for sRNAs using a fluorescent marker</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K592010">BBa_K592010</a></td>
 +
<td>Coding</td>
 +
<td>amilGFP</td>
 +
<td>Yellow chromoprotein</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864600">BBa_K864600</a></td>
 +
<td>Regulatory</td>
 +
<td>T0</td>
 +
<td>Synthetic terminator</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864601">BBa_K864601</a></td>
 +
<td>Regulatory</td>
 +
<td>TλT1</td>
 +
<td>Synthetic terminator</td>
</tr>
</tr>
</tbody>
</tbody>
</table>
</table>
 +
<tr>
 +
<td colspan="2">
 +
<a name="backbones"></a>
</td>
</td>
</tr>
</tr>
 +
 +
<tr>
 +
<td colspan="2">
 +
<table>
 +
<tr><td class="subtext"><h2>Submitted backbones</h2></td>
 +
<td valign="bottom"><a id="top" href="#top">Back to top</a></td></tr>
</table>
</table>
 +
</td>
 +
</tr>
 +
<tr>
 +
<td>
 +
<table id="sp" width="400" cellpadding="2" cellspacing="1">
 +
<thead>
 +
<tr>
 +
<th scope="col">BioBrick ID</th>
 +
<th scope="col">Name</th>
 +
<th scope="col">Description</th>
 +
</tr>
 +
</thead>
 +
 +
<tbody>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864000">BBa_K864000</a></td>
 +
<td>pSB4A15</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864001">BBa_K864001</a></td>
 +
<td>pSB4C15</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864002">BBa_K864002</a></td>
 +
<td>pSB4K15</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864003">BBa_K864003</a></td>
 +
<td>pSB4S15</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864004">BBa_K864004</a></td>
 +
<td>pSB4A15(FRT)</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864005">BBa_K864005</a></td>
 +
<td>pSB4C15(FRT)</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864006">BBa_K864006</a></td>
 +
<td>pSB4K15(FRT)</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864007">BBa_K864007</a></td>
 +
<td>pSB4S15(FRT)</td>
 +
<td>Low copy BioBrick standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864008">BBa_K864008</a></td>
 +
<td>pSB4A15iq</td>
 +
<td>Low copy BioBrick standard vector with LacI</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864009">BBa_K864009</a></td>
 +
<td>pSB4C15iq</td>
 +
<td>Low copy BioBrick standard vector with LacI</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864010">BBa_K864010</a></td>
 +
<td>pSB4K15iq</td>
 +
<td>Low copy BioBrick standard vector with LacI</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864011">BBa_K864011</a></td>
 +
<td>pSB4S15iq</td>
 +
<td>Low copy BioBrick standard vector with LacI</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864013">BBa_K864013</a></td>
 +
<td>pSB4C15iq(FRT)</td>
 +
<td>Low copy BioBrick standard vector with LacI</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864014">BBa_K864014</a></td>
 +
<td>pSB4K15iq(FRT)</td>
 +
<td>Low copy BioBrick standard vector with LacI</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864017">BBa_K864017</a></td>
 +
<td>pSB8C15</td>
 +
<td>Low copy BioBrick temperature sensitive standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864019">BBa_K864019</a></td>
 +
<td>pSB8A15</td>
 +
<td>Low copy BioBrick temperature sensitive standard vector</td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K864020">BBa_K864020</a></td>
 +
<td>pSB8S15</td>
 +
<td>Low copy BioBrick temperature sensitive standard vector</td>
 +
</tr>
 +
</tbody>
 +
</table>
 +
 +
</td>
 +
</tr>
 +
</table>
</p>
</p>

Latest revision as of 03:51, 27 September 2012

Team Uppsala University – iGEM 2012


Favorite Parts

 Back to top

Small RNA Scaffold

BBa_K864440 - J23101-Spot42:

This is the native spot42 small RNA constitutively expressed by BBa_J23101 and is useful as a template for generating a randomized library of small RNAs for downregulation of any gene of interest.


Reporter System

BBa_K864444 - RFP-linker-SYFP:

This part can be used to insert any 5’UTR of a gene of interest to screen for downregulation of this gene by artificial small RNAs. This reporter reporter system comes with a fluorescent marker that is downregulated by any small RNA targeting the 5'UTR of the gene of interest.


New low-copy backbone

BBa_K864001 - pSB4C15:

This is a new BioBrick standard vector with low copy pSC101 replication origin, especially usable for Lambda Red recombineering in E coli.


Blue Chromoprotein

BBa_K864401 - aeBlue:

aeBlue is a blue chromoprotein extracted from the basal disk of a beadlet anemone Actinia equina. The protein has an absorption maximum at 597nm and a deep blue colour. The protein aeBlue has significant sequence homologies with proteins in the GFP family.

Submitted Parts

 Back to top
BioBrick ID Type Name Description
BBa_K864100 Coding SYFP2 Yellow fluorescent protein
BBa_K864101 Composite B0032 - SYFP2 Yellow fluorescent protein
BBa_K864102 Composite B0034 - SYFP2 Yellow fluorescent protein
BBa_K864150 Composite cat-sacB Selection/counter-selection casette
BBa_K864200 Coding MarR Multi-resistant repressor
BBa_K864201 Coding LexA Repressor of the E. coli SOS-system
BBa_K864202 Coding MarR(G95S) Point-mutated for higher repression
BBa_K864203 Coding LexA(G85D) Point-mutated for higher repression
BBa_K864204 Coding OmpF Outer membrane porin
BBa_K864680 Coding TetM Ribosome protection protein
BBa_K592012 Coding eforRed Red/pink chromoprotein
BBa_K864401 Coding aeBlue Blue chromoprotein
BBa_K864402 Composite J23110 - B0034 - eforRed Red/pink chromoprotein
BBa_K864403 Composite J23110 - B0034 - aeBlue Blue chromoprotein
BBa_K864404 Composite J23110 - B0034 - cjBlue Turquoise chromoprotein
BBa_K864440 Scaffold J23101 - Spot42 Scaffold for sRNAs
BBa_K864444 Measurement RFP - linker - SYFP2 Screening system for sRNAs using a fluorescent marker
BBa_K592010 Coding amilGFP Yellow chromoprotein
BBa_K864600 Regulatory T0 Synthetic terminator
BBa_K864601 Regulatory TλT1 Synthetic terminator

Submitted backbones

 Back to top
BioBrick ID Name Description
BBa_K864000 pSB4A15 Low copy BioBrick standard vector
BBa_K864001 pSB4C15 Low copy BioBrick standard vector
BBa_K864002 pSB4K15 Low copy BioBrick standard vector
BBa_K864003 pSB4S15 Low copy BioBrick standard vector
BBa_K864004 pSB4A15(FRT) Low copy BioBrick standard vector
BBa_K864005 pSB4C15(FRT) Low copy BioBrick standard vector
BBa_K864006 pSB4K15(FRT) Low copy BioBrick standard vector
BBa_K864007 pSB4S15(FRT) Low copy BioBrick standard vector
BBa_K864008 pSB4A15iq Low copy BioBrick standard vector with LacI
BBa_K864009 pSB4C15iq Low copy BioBrick standard vector with LacI
BBa_K864010 pSB4K15iq Low copy BioBrick standard vector with LacI
BBa_K864011 pSB4S15iq Low copy BioBrick standard vector with LacI
BBa_K864013 pSB4C15iq(FRT) Low copy BioBrick standard vector with LacI
BBa_K864014 pSB4K15iq(FRT) Low copy BioBrick standard vector with LacI
BBa_K864017 pSB8C15 Low copy BioBrick temperature sensitive standard vector
BBa_K864019 pSB8A15 Low copy BioBrick temperature sensitive standard vector
BBa_K864020 pSB8S15 Low copy BioBrick temperature sensitive standard vector



Sponsors






Retrieved from "http://2012.igem.org/Team:Uppsala_University/Parts"