Team:Leicester/Chemistry

From 2012.igem.org

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       <li> <a href="/Team:Leicester/Project">Project</a></li>
       <li> <a href="/Team:Leicester/Project">Project</a></li>
       <li> <a href="/Team:Leicester/Chemistry">Chemistry</a></li>
       <li> <a href="/Team:Leicester/Chemistry">Chemistry</a></li>
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       <li> <a href="/Team:Leicester/Parts">Parts Submitted to the Registry</a></li>
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       <li> <a href="/Team:Leicester/Parts">Parts Submitted to Registry</a></li>
       <li> <a href="/Team:Leicester/Modeling">Modeling</a></li>
       <li> <a href="/Team:Leicester/Modeling">Modeling</a></li>
       <li> <a href="/Team:Leicester/Notebook">Notebook</a>
       <li> <a href="/Team:Leicester/Notebook">Notebook</a>
<ul>
<ul>
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         <li> <a href="/Team:Leicester/April2012">April</a></li>
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        <li> <a href="/Team:Leicester/May2012">May</a></li>
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        <li> <a href="/Team:Leicester/June2012">June</a></li>
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         <li> <a href="/Team:Leicester/July2012">July</a></li>
         <li> <a href="/Team:Leicester/July2012">July</a></li>
         <li> <a href="/Team:Leicester/August2012">August</a></li>
         <li> <a href="/Team:Leicester/August2012">August</a></li>
         <li> <a href="/Team:Leicester/September2012">September</a></li>
         <li> <a href="/Team:Leicester/September2012">September</a></li>
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        <li> <a href="/Team:Leicester/October2012">October</a></li>
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         </ul></li>
         </ul></li>
       <li> <a href="/Team:Leicester/Safety">Safety</a></li>
       <li> <a href="/Team:Leicester/Safety">Safety</a></li>
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<li> <a href="/Team:Leicester/HumanPractices">Human Practices</a></li>
       <li> <a href="/Team:Leicester/Attributions">Attributions</a></li>
       <li> <a href="/Team:Leicester/Attributions">Attributions</a></li>
       <li> <a href="/Team:Leicester/Bibliography">Bibliography</a></li>
       <li> <a href="/Team:Leicester/Bibliography">Bibliography</a></li>
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   <div id="contentArea">
     <h1>Chemistry</h1>
     <h1>Chemistry</h1>
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<p>The breakdown of polystyrene is the quest many scientists have faced in recent years. It is now more than ever before, where there is an urgency to find a biological and chemical route to degrade polystyrene in an economical and environmentally safe way as this is the only down side polystyrene poses. We, the organic chemists are responsible for coming up with syntheses to breakdown or convert polystyrene into useful products. We are working alongside with the biochemists and the iGEM team to find a convenient and useful way to break down polystyrene.</p>
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<table width="100%">
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<p>Research into present chemical techniques did not show anything useful so this surely suggests that we were entering new territory, which was something that was exciting to know. Equipped with knowledge from our two years of studying chemistry and our problem solving skills learnt we have devised synthetic chemical routes to breakdown and/or the conversion of polystyrene. The iGEM team have found excellent support from a plastic company Styrofoam. This organisation converts plastics into lactic acids and then into polylactic acids which in turns are easily biodegradable. It was thought that turning polystyrene into lactic acid and then into polylactic acid may be possible and this was our starting point for our research.
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<tr>
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</p>
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<td valign="top">
 +
<p>The breakdown of polystyrene is a quest many scientists have faced in recent years. Now more than ever before, there is an urgency to find a biological route to degrade polystyrene in an economical and environmentally safe way: the inability to do this is really the only downside of polystyrene as a useful material. We, the iGEM Chemistry team, are responsible for coming up with reactions to breakdown or convert polystyrene into useful products. We are working alongside the other team section as we all have many different skills that are of great use to find a safe and useful way to break down polystyrene.</p>
 +
<p>Our research into current chemical techniques did not show anything useful to the problem at hand, this suggested that we were entering new territory which added to the excitement. Equipped with the knowledge from our first two years of studying chemistry and our problem solving skills gained along the way, we devised chemical syntheses to the breakdown and/or the conversion of polystyrene to manageable compounds. Below is our syntheses and we hope that they will help any researchers who wish to take the project further. Our aim was to use readily available chemicals that are in abundance as this would make the whole process as cheap as possible. One of our sponsors, Styropack- a Synbra company, provided us with tremendous support and aid. They were an organisation that specialised in making EPS and converting polymers into biodegradable polylactic acids. We took this idea on board and used it as a starting point for our research.</p>
 +
</td>
 +
<td><div align="center"><img src="https://static.igem.org/mediawiki/2012/a/a2/ChemPageGraphic.jpg" width="400px" /></div></td>
 +
</tr>
 +
</table>
 +
 
 +
<h2>Mechanism Insight</h2>
 +
<p>Mechanism 1: This was our initial idea using knowledge of our sponsors work. We thought this decomposition would be easy. Then we realised our mistake! We were researching the wrong route. (Decomposing styrene, not polystyrene!)</p>
 +
<p>Mechanism 2 and 3: Once we had conferred, we realised that these mechanisms would not be possible as a heterogeneous catalyst Palladium would not work in this reaction so we looked for a suitable homogeneous catalyst.</p>
 +
<p>Mechanism 4: Out of all the mechanisms we studied, this is by far the most promising. Despite this, there is still an urgent need to find an enzyme that can generate a reactive oxygen species. This must then react further to oxidise the benzyl carbon as well as degrade the remaining aliphatic chain.</p>
 +
<p>Mechanism 5: This was an attempt at using transition metal chemistry to break the aliphatic chain of the hydrocarbon. It is a theoretical idea but one that paves the way for more creative methods.</p>
-
<br />
 
<h2>Mechanism 1</h2>
<h2>Mechanism 1</h2>
-
     <p>The first mechanism shows the conversion of styrene (monomer of polystyrene) to lactic acid which can be converted to polylactic acid and further degraded in the environment easily. This mechanism involves the use of harsh and dangerous chemicals. The first step shows that benzyne is formed which is a carcinogen. It can be reduced to benzene and disposed of easily or stablised by a transition metal.</p>
+
     <p>The first mechanism shows the conversion of styrene (monomer of polystyrene) to lactic acid, which can be converted to polylactic acid (a biodegradable alternative). This mechanism involves the use of harsh and dangerous chemicals such as Pyridinium chlorochromate and Chromic acid. The first step shows how benzyne is formed, which is also a carcinogen. This can be reduced to benzene and disposed of easily or stablised by a transition metal.</p>
-
<br />
+
<br />
<br />
<div align="center"><img src="https://static.igem.org/mediawiki/2012/4/4a/Mech_1_zps06742c60.png" alt="A devised possible chemical route for the degradation of the polystyrene monomer to lactic acid" width="640" height="770"/></div>
<div align="center"><img src="https://static.igem.org/mediawiki/2012/4/4a/Mech_1_zps06742c60.png" alt="A devised possible chemical route for the degradation of the polystyrene monomer to lactic acid" width="640" height="770"/></div>
  <br />
  <br />
-
<p>This route, though may work for styrene, will however not work for the breakdown of the polymer itself as this shows the conversion of the monomer unit into lactic acid.</p>
+
<p>This route, though it may work for styrene, will not work for the breakdown of the polymer itself.</p>
  <br />
  <br />
<h2>Mechanism 2</h2>
<h2>Mechanism 2</h2>
-
     <p> The second mechanism shows that as polystyrene is heated up, the intermolecular forces weaken and with the added fact that benzene can undergo electrophilic aromatic substitution; it is treated with nitric acid to afford a new compound that contains a new NO2 side group. The final product of this reaction is a benzene ring with an alcohol side group. We are still researching into practical uses and possible further reactions.</p>
+
     <p> The second mechanism shows that as polystyrene is heated up, the intermolecular forces weaken. Because benzene can undergo electrophilic aromatic substitution, it can be treated with Nitric Acid to afford a new compound that contains a new Nitrogen dioxide side group. The final product of this reaction is a benzene ring with an alcohol functional group. We are still researching practical uses and possible further reactions on this line.</p>
-
<br />
+
<br />
<br />
<div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Mechanism_2.png" alt="A devised possible chemical route for the degradation of the polystyrene to an additional alcohol side group" width="640" height="746" /></div>
<div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Mechanism_2.png" alt="A devised possible chemical route for the degradation of the polystyrene to an additional alcohol side group" width="640" height="746" /></div>
-
<br />
 
  <br />
  <br />
<h2>Mechanism 3</h2>
<h2>Mechanism 3</h2>
-
     <p> This is an alternative mechanism to that proposed in mechanism 2. Instead of placing an OH side group, a bromine group is added. Ultimately the formation of an acid anhydride chain is formed which is degradable in the environment. The hydrocarbon chain would need to be both weakened and then broken so as to afford pure anhydride monomers which can be easily broken down.</p>
+
     <p> This is an alternative mechanism to that proposed in mechanism 2. Instead of adding an alcohol functional group, a Bromine is added. Ultimately this results in the formation of an acid anhydride chain, which is degradable in the environment. The aliphatic chain would need to be both weakened and then broken to afford pure anhydride monomers.</p>
-
<br />
+
<br />
<br />
<div align="center"><img src="https://static.igem.org/mediawiki/2012/7/72/Mech_3.jpg" alt="A devised possible chemical route for the degradation of the polystyrene to the formation of an acid anhydride chain" width="640" height="835"/></div>
<div align="center"><img src="https://static.igem.org/mediawiki/2012/7/72/Mech_3.jpg" alt="A devised possible chemical route for the degradation of the polystyrene to the formation of an acid anhydride chain" width="640" height="835"/></div>
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  <br />
  <br />
<h2>Mechanism 4</h2>
<h2>Mechanism 4</h2>
-
     <p> This final mechanism draws on the peroxyl product formation. Organic peroxyls are used in many chemical reactions in industry so it may be possible that this organic peroxyl will have a use in the near future.</p>
+
     <p> This final mechanism draws on peroxyl product formation. Organic peroxyls are used in chemical reactions in industry so it may be possible that this organic peroxyl will have a use in the near future.</p>
-
<br />
+
<br />
<br />
<div align="center"><img src=" https://static.igem.org/mediawiki/2012/9/9e/Mech_4_zps7bb29cae.png" alt="A devised possible chemical route for the degradation of the polystyrene to a organic peroxyl compound" width="640" height="517"/></div>
<div align="center"><img src=" https://static.igem.org/mediawiki/2012/9/9e/Mech_4_zps7bb29cae.png" alt="A devised possible chemical route for the degradation of the polystyrene to a organic peroxyl compound" width="640" height="517"/></div>
  <br />
  <br />
-
<p>This is a viable route. Conversion of the product to a smaller unit of benzoyl peroxide would have pharmaceutical uses. To add to the mechanism above, the use of a cytochrome P450 or a peroxidase may be able to generate a reactive oxygen species that will oxidise the benzyl carbon. Degradation of the aliphatic hydrocarbon chain may be possible via mechanism 5.
+
<p>This seems like a viable chemical route. Conversion of the product above to compounds such as Benzoyl Peroxide has pharmaceutical uses such as acne creams but the product will be of very low yield if not impure. To add to the mechanism above, the use of a cytochrome P450 or a peroxidase may be able to generate a reactive oxygen species that will oxidise the benzyl carbon. Degradation of the aliphatic hydrocarbon chain may also be possible via mechanism 5 to yield more simple stablised products.
  <br />
  <br />
<h2>Mechanism 5</h2>
<h2>Mechanism 5</h2>
-
     <p> The fifth mechanism shows how we might be able to degrade polystyrene down if we were to pursue an inorganic method. This is an interesting concept as most chemical research today is influenced by inorganic chemistry. We believe this route below could serve as a template for  future efforts to breakdown polystyrene. Key reagents are notably missing as this we have left this open to further research.</p>
+
     <p> The fifth mechanism shows how we might be able to degrade polystyrene by pursuing an inorganic synthesis. This is an interesting concept as most chemical research today is influenced by inorganic chemistry. We believe the route below could serve as a template for  future efforts to breakdown polystyrene. However key reagents are notably missing so we have left this open to further research.</p>
-
<br />
+
<br />
<br />
<div align="center"><img src="https://static.igem.org/mediawiki/2012/4/41/Mech_5f_%281%29.png" alt="An inorganic route into the breakdown of polystyrene" width="640" height="746" /></div>
<div align="center"><img src="https://static.igem.org/mediawiki/2012/4/41/Mech_5f_%281%29.png" alt="An inorganic route into the breakdown of polystyrene" width="640" height="746" /></div>
  <br />
  <br />
-
<br />
+
<p>The syntheses above were taken from research that we found in journals and books. The former part of the synthesis in mechanism was taken from the Journal of the American Chemical Society, Room Temperature Dehydrogenation of Ethane to Ethylene ( <i>See references below</i>) and the latter part of the mechanism was taken from a textbook, Organometallics 2 (<i>See bibliography</i>)
 +
<br />
<h2>Hazards and Safety</h2>
<h2>Hazards and Safety</h2>
<table border="1px" width="100%">
<table border="1px" width="100%">
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<th>Reagents</th>
<th>Reagents</th>
<th>Reagents/Formula</th>
<th>Reagents/Formula</th>
-
<th>Melting Point<.th>
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<th>Melting Point</th>
<th>Main Hazard</th>
<th>Main Hazard</th>
</tr>
</tr>
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<br/>
<br/>
-
<p>To conclude, this research has shown us organic chemists that though there may not be a definite chemical route, we have pitched in our ideas and we are confident that in the near future that there will definetly be a cheap way to break down polystyrene that is both economical and safe. We set out to breakdown polystyrene completely and we feel that we have learnt much about the application of chemistry in synthesis.</p>
+
<p>To conclude, this research has shown us that although there may not be a definite biological and chemical route for polystyrene degradation, we have researched widely and pitched our ideas to show how chemical approaches may work if a biological aspect is used in combination. By finding useful enzymes or bacteria which can carry out certain steps of the syntheses in appropriate conditions, it will no doubt be possible to break down polystyrene. We are confident that in the near future that there will definitely be a cheap way to break down polystyrene that is both economical and safe. We have learnt much about the application of chemistry in synthesis and gained invaluable skills. We believe that we are steps closer to solving the worlds problem of polystyrene.</p>
 +
<p>The iGEM team would like to thank Dr Andrew Jamieson, Lecturer in Organic Chemistry at the University of Leicester for his contribution towards our work. We greatly appreciate his correspondence and feedback.</p>
     <td><h1> References </h1></td>
     <td><h1> References </h1></td>
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<tr>
<tr>
<p>Vincent N. Cavaliere, Marco G. Crestani, Balazs Pinter, Maren Pink, Chun-Hsing Chen, Mu-Hyun Baik, and Daniel J. Mindiola. Room Temperature Dehydrogenation of Ethane to Ethylene <i>Journal of the American Chemical Society</i> </p>
<p>Vincent N. Cavaliere, Marco G. Crestani, Balazs Pinter, Maren Pink, Chun-Hsing Chen, Mu-Hyun Baik, and Daniel J. Mindiola. Room Temperature Dehydrogenation of Ethane to Ethylene <i>Journal of the American Chemical Society</i> </p>
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Latest revision as of 21:48, 26 September 2012

iGEM Leicester Test Page 2012

Chemistry

The breakdown of polystyrene is a quest many scientists have faced in recent years. Now more than ever before, there is an urgency to find a biological route to degrade polystyrene in an economical and environmentally safe way: the inability to do this is really the only downside of polystyrene as a useful material. We, the iGEM Chemistry team, are responsible for coming up with reactions to breakdown or convert polystyrene into useful products. We are working alongside the other team section as we all have many different skills that are of great use to find a safe and useful way to break down polystyrene.

Our research into current chemical techniques did not show anything useful to the problem at hand, this suggested that we were entering new territory which added to the excitement. Equipped with the knowledge from our first two years of studying chemistry and our problem solving skills gained along the way, we devised chemical syntheses to the breakdown and/or the conversion of polystyrene to manageable compounds. Below is our syntheses and we hope that they will help any researchers who wish to take the project further. Our aim was to use readily available chemicals that are in abundance as this would make the whole process as cheap as possible. One of our sponsors, Styropack- a Synbra company, provided us with tremendous support and aid. They were an organisation that specialised in making EPS and converting polymers into biodegradable polylactic acids. We took this idea on board and used it as a starting point for our research.

Mechanism Insight

Mechanism 1: This was our initial idea using knowledge of our sponsors work. We thought this decomposition would be easy. Then we realised our mistake! We were researching the wrong route. (Decomposing styrene, not polystyrene!)

Mechanism 2 and 3: Once we had conferred, we realised that these mechanisms would not be possible as a heterogeneous catalyst Palladium would not work in this reaction so we looked for a suitable homogeneous catalyst.

Mechanism 4: Out of all the mechanisms we studied, this is by far the most promising. Despite this, there is still an urgent need to find an enzyme that can generate a reactive oxygen species. This must then react further to oxidise the benzyl carbon as well as degrade the remaining aliphatic chain.

Mechanism 5: This was an attempt at using transition metal chemistry to break the aliphatic chain of the hydrocarbon. It is a theoretical idea but one that paves the way for more creative methods.

Mechanism 1

The first mechanism shows the conversion of styrene (monomer of polystyrene) to lactic acid, which can be converted to polylactic acid (a biodegradable alternative). This mechanism involves the use of harsh and dangerous chemicals such as Pyridinium chlorochromate and Chromic acid. The first step shows how benzyne is formed, which is also a carcinogen. This can be reduced to benzene and disposed of easily or stablised by a transition metal.


A devised possible chemical route for the degradation of the polystyrene monomer to lactic acid

This route, though it may work for styrene, will not work for the breakdown of the polymer itself.


Mechanism 2

The second mechanism shows that as polystyrene is heated up, the intermolecular forces weaken. Because benzene can undergo electrophilic aromatic substitution, it can be treated with Nitric Acid to afford a new compound that contains a new Nitrogen dioxide side group. The final product of this reaction is a benzene ring with an alcohol functional group. We are still researching practical uses and possible further reactions on this line.


A devised possible chemical route for the degradation of the polystyrene to an additional alcohol side group

Mechanism 3

This is an alternative mechanism to that proposed in mechanism 2. Instead of adding an alcohol functional group, a Bromine is added. Ultimately this results in the formation of an acid anhydride chain, which is degradable in the environment. The aliphatic chain would need to be both weakened and then broken to afford pure anhydride monomers.


A devised possible chemical route for the degradation of the polystyrene to the formation of an acid anhydride chain

The mechanism above, in combination with mechanism 5 below, may work to break down polystyrene into smaller parts.


Mechanism 4

This final mechanism draws on peroxyl product formation. Organic peroxyls are used in chemical reactions in industry so it may be possible that this organic peroxyl will have a use in the near future.


A devised possible chemical route for the degradation of the polystyrene to a organic peroxyl compound

This seems like a viable chemical route. Conversion of the product above to compounds such as Benzoyl Peroxide has pharmaceutical uses such as acne creams but the product will be of very low yield if not impure. To add to the mechanism above, the use of a cytochrome P450 or a peroxidase may be able to generate a reactive oxygen species that will oxidise the benzyl carbon. Degradation of the aliphatic hydrocarbon chain may also be possible via mechanism 5 to yield more simple stablised products.

Mechanism 5

The fifth mechanism shows how we might be able to degrade polystyrene by pursuing an inorganic synthesis. This is an interesting concept as most chemical research today is influenced by inorganic chemistry. We believe the route below could serve as a template for future efforts to breakdown polystyrene. However key reagents are notably missing so we have left this open to further research.


An inorganic route into the breakdown of polystyrene

The syntheses above were taken from research that we found in journals and books. The former part of the synthesis in mechanism was taken from the Journal of the American Chemical Society, Room Temperature Dehydrogenation of Ethane to Ethylene ( See references below) and the latter part of the mechanism was taken from a textbook, Organometallics 2 (See bibliography)

Hazards and Safety

Reagents Reagents/Formula Melting Point Main Hazard
Sodium Hydroxide NaOH 318 oC, 591 K, 604 oF Corrosive
Sodium Amide NaNH2 210 oC, 483 K, 410 oF Not Listed
Ammonia NH3 -77.73oC, 195 K, -108 oF Oxidising, Toxic, Flammable, Irritant
Platinum Pt 1768.3 oC, 2041.4 K, 3214.9 oF Not Listed
Pyridinium chlorochromate (PCC) C5H5NHClCrO3 205 oC, 478 K, 401 oF Oxidising, Toxic, Flammable, Carcinogenic, Irritant
Chromic Acid H2CrO4 - Powerful oxidising agent, further reactions produce toxic and corrosive products
Nitric Acid HNO3 -42 oC, 231 K, -44 oF Toxic, Flammable, Irritant
Sulphuric Acid H2SO4 10 oC, 283 K, 50 oF Oxidising, Toxic, Flammable, Carcinogenic, Irritant
Palladium Pd 1554.9 oC, 1828.05 K, 2830.82 oF Oxidising, Toxic, Flammable, Carcinogenic, Irritant
Copper(I) bromide CuBr 492 oC, 765 K, 918 oF Not Listed
Magnesium Mg 650 oC, 923 K, 1202 oF Not Listed
Tetrahydrofuran THF -108.4 oC, 165 K, -163 oF Flammable, Irritant
Carbon Dioxide CO2 -78 oC, 194.7 K, -109 oF Not Listed
Hydronium H3O+ Not Listed Not Listed

To conclude, this research has shown us that although there may not be a definite biological and chemical route for polystyrene degradation, we have researched widely and pitched our ideas to show how chemical approaches may work if a biological aspect is used in combination. By finding useful enzymes or bacteria which can carry out certain steps of the syntheses in appropriate conditions, it will no doubt be possible to break down polystyrene. We are confident that in the near future that there will definitely be a cheap way to break down polystyrene that is both economical and safe. We have learnt much about the application of chemistry in synthesis and gained invaluable skills. We believe that we are steps closer to solving the worlds problem of polystyrene.

The iGEM team would like to thank Dr Andrew Jamieson, Lecturer in Organic Chemistry at the University of Leicester for his contribution towards our work. We greatly appreciate his correspondence and feedback.

References

Vincent N. Cavaliere, Marco G. Crestani, Balazs Pinter, Maren Pink, Chun-Hsing Chen, Mu-Hyun Baik, and Daniel J. Mindiola. Room Temperature Dehydrogenation of Ethane to Ethylene Journal of the American Chemical Society

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