Team:Amsterdam/maarten/

From 2012.igem.org

(Difference between revisions)
Line 4: Line 4:
<script type='text/javascript'>
<script type='text/javascript'>
function setup(){
function setup(){
-
document.write('check')
+
$('#visualizationButtons').empty()
-
                nonexistingFunction()
+
$('#infovis').empty()
 +
$('#readout').empty()
 +
addForbiddenSequences()
 +
sensors = document.plasmidForm.sensors.value.toLowerCase()
 +
sensorArray = formatSensors(sensors)
 +
        promoters = formatPartsregistryPromoters()
 +
        sensorArray = promoters.concat(sensorArray)
 +
tempArray = new Array()
 +
j = 0
 +
number = 0
 +
targetSites = new Array()
 +
for (sensor in sensorArray){
 +
tempArray[j] = sensorArray[sensor]
 +
j++
 +
if (j%5 === 0 && j !== 0){
 +
configuratePlasmid(tempArray,number)
 +
number++
 +
tempArray = new Array()
 +
j = 0
 +
for (item in memoryPlasmid.memoryObjects){
 +
site = new Object()
 +
site.zincFingerDescription = memoryPlasmid.memoryObjects[item].zincFinger.featureObject.description
 +
site.zincFinger = memoryPlasmid.memoryObjects[item].zincFinger.featureObject.target
 +
site.zincFingerLength = site.zincFinger.length
 +
site.methyltransferaseDescription = memoryPlasmid.memoryObjects[item].methyltransferase.featureObject.description
 +
site.methyltransferase = memoryPlasmid.memoryObjects[item].methyltransferase.featureObject.target
 +
site.methyltransferaseLength = site.methyltransferase.length
 +
site.sensor = memoryPlasmid.memoryObjects[item].sensor.description
 +
targetSites.push(site)
 +
}
 +
}
 +
}
 +
if (j%5 !== 0){
 +
configuratePlasmid(tempArray,number)
 +
for (item in memoryPlasmid.memoryObjects){
 +
site = new Object()
 +
site.zincFingerDescription = memoryPlasmid.memoryObjects[item].zincFinger.featureObject.description
 +
site.zincFinger = memoryPlasmid.memoryObjects[item].zincFinger.featureObject.target
 +
site.zincFingerLength = site.zincFinger.length
 +
site.methyltransferaseDescription = memoryPlasmid.memoryObjects[item].methyltransferase.featureObject.description
 +
site.methyltransferase = memoryPlasmid.memoryObjects[item].methyltransferase.featureObject.target
 +
site.methyltransferaseLength = site.methyltransferase.length
 +
site.sensor = memoryPlasmid.memoryObjects[item].sensor.description
 +
targetSites.push(site)
 +
}
 +
}
 +
//genbankRestriction(targetSites)
 +
json = createJSONRestriction(targetSites)
 +
$('#visualizationButtons').append('<input type="hidden" name="json-1" value="'+escape(JSON.stringify(json))+'"/><input class="submit" type="submit" value="Restriction Plasmid" onclick="visualization(-1);return false"/>');
 +
$('#readout').append('<input type="textfield" name="readout" value=""/><input class="submit" type="submit" value="Submit" onClick="getReadout();return false"/>');
}
}
</script>
</script>

Revision as of 19:18, 3 September 2012

Enter your plasmid in fasta or genbank format


Enter your sensors in fasta or genbank format























Retrieved from "http://2012.igem.org/Team:Amsterdam/maarten/"