| Line 3: | Line 3: | ||
<span class="heading">Model equations<hr/></span> | <span class="heading">Model equations<hr/></span> | ||
| - | {|border="1" | + | {|border="1", colspan="3" |
| - | + | ||
|Lldr promoter | |Lldr promoter | ||
!Reaction | !Reaction | ||
| Lldr promoter | Reaction | Propensity | Comments |
|---|---|---|---|
| ø -> Lldr | 0.1 | Constant production of Lldr | |
| Lldr -> ø | 0.0001 | Constant degradation of Lldr relative to the creation of Lldr giving a molecule number of 1000. | |
| 2 Lldr -> Lldr2 | 3 | Dimerization of Lldr | |
| Lldr2 -> 2 Lldr | 100 | Undimerization of Lldr giving a majority of Lldr in dimer. | |
| Lldr2 -> Lldr | 0.0001 | Degradation of Lldr dimer. | |
| Lldr2 + Lact -> Lldr2Lact | 0.0001 | Binding of lactate to Lldr dimer. Lactate is notconsumed. | |
| Lldr2Lact -> Lldr2 | 1 | Unbinding of Lactate to dimer | |
| Lldr2Lact -> Lldr | 0.0001 | Degradation of Lldr in Lldr-Lactate complex | |
| Lldr2 + pLact -> pLactLldr2 | 1 | Binding of dimer to lld promoter | |
| pLactLldr2 -> Lldr2 + pLact | 0.1 | Unbinding of dimer to promoter | |
| pLactLldr2 -> Lldr + pLact | 0.0001 | Degradation of Lldr bound to prooter. | |
| pLactLldr2 + Lact -> pLactLldr2Lact + Lact | 0.0001 | Binding of lactate to promoter dimer complex. | |
| pLactLldr2Lact -> pLactLldr2 | 1 | Release of lactate from promoter dimer complex. | |
| pLactLldr2Lact -> pLactLldr2Lact + mLuxi | 0.005 | Transcription of activated promoter gives LuxI mRNA | |
| mLuxI -> ø | 0.0025 | Degradation of LuxI mRNA | |
| mLuxI -> mLuxI + LuxI | 0.0167 | Translation of LuxI mRNA | |
| LuxI -> ø | 0.0002814 | Degradation of LuxI |
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