Team:Amsterdam/maarten/

From 2012.igem.org

(Difference between revisions)
Line 89: Line 89:
         zfSequence = ''
         zfSequence = ''
         for (i=1;i<zfFormatted.length;i++){
         for (i=1;i<zfFormatted.length;i++){
-
            document.write(zfFormatted[i]+'<br>')
 
             zfSequence+=zfFormatted[i]
             zfSequence+=zfFormatted[i]
         }
         }
-
        document.write('__<br>')
 
         zfObject = new Object()
         zfObject = new Object()
         zfObject.target = zfTarget
         zfObject.target = zfTarget
Line 407: Line 405:
},
},
addMemoryObject : function(sensor,rbs,zincFinger,linker,mycTag,methyltransferase,terminator){
addMemoryObject : function(sensor,rbs,zincFinger,linker,mycTag,methyltransferase,terminator){
-
                document.write(zincFinger+'<br>')
 
memoryObject = new Object()
memoryObject = new Object()
memoryObject.sensor = sensor
memoryObject.sensor = sensor
Line 513: Line 510:
                     continue
                     continue
                 } else{
                 } else{
-
                    document.write(zincFingers[j].sequence+'<br>')
 
                     featureArray[2] = new feature(memoryPlasmid.dna.length+1,memoryPlasmid.dna.length+zincFingers[j].sequence.length,'Zinc Finger',zincFingers[j].sequence,zincFingers[j].description,zincFingers[j])
                     featureArray[2] = new feature(memoryPlasmid.dna.length+1,memoryPlasmid.dna.length+zincFingers[j].sequence.length,'Zinc Finger',zincFingers[j].sequence,zincFingers[j].description,zincFingers[j])
                     memoryPlasmid.setDNA(memoryPlasmid.dna+zincFingers[j].sequence)
                     memoryPlasmid.setDNA(memoryPlasmid.dna+zincFingers[j].sequence)
Line 531: Line 527:
             featureArray[6] = new feature(memoryPlasmid.dna.length+1,memoryPlasmid.dna.length+terminators[j].sequence.length,'Terminator',terminators[j].sequence,terminators[j].description,terminators[j])
             featureArray[6] = new feature(memoryPlasmid.dna.length+1,memoryPlasmid.dna.length+terminators[j].sequence.length,'Terminator',terminators[j].sequence,terminators[j].description,terminators[j])
    memoryPlasmid.setDNA(memoryPlasmid.dna+terminators[j].sequence+randomDNA(10))
    memoryPlasmid.setDNA(memoryPlasmid.dna+terminators[j].sequence+randomDNA(10))
-
            document.write(featureArray[2]+'<br>')
 
             memoryPlasmid.addMemoryObject(featureArray[0],featureArray[1],featureArray[2],featureArray[3],featureArray[4],featureArray[5],featureArray[6])
             memoryPlasmid.addMemoryObject(featureArray[0],featureArray[1],featureArray[2],featureArray[3],featureArray[4],featureArray[5],featureArray[6])
         }
         }
-
                 for (item in memoryPlasmid.memoryObjects){
+
                  
-
                    document.write(memoryPlasmid.memoryObjects[item].zincFinger+'<br>')
+
-
                }
+
restrictionPlasmid.setDNA(memoryPlasmid.features[1].sequence)
restrictionPlasmid.setDNA(memoryPlasmid.features[1].sequence)
for (item in memoryPlasmid.memoryObjects){
for (item in memoryPlasmid.memoryObjects){

Revision as of 00:23, 10 August 2012

Enter your plasmid in fasta or genbank format


Enter your sensors in fasta or genbank format


Parts registry sensors: Madras


Parts registry sensors: Phage


Parts registry sensors: Metal sensitive

Parts registry sensors: Cell signalling