Team:Calgary/Project/References

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<li>Asenjo J.A. (1949).Bioreactor system design. New York (NY): Marcel Dekker Inc.  
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<li>2009 iGEM Calgary. <a href="https://2009.igem.org/Team:Calgary/Notebook"> https://2009.igem.org/Team:Calgary/Notebook</a> </li><br>
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<li> Venkitasubramanian P, Daniels L, Rosazza J.P.N. Reduction of Carboxylic Acids by Nocardia Aldehyde Oxidoreductase Requires a Phosphopantetheinylated Enzyme. Journal of Biological Chemistry 2007 Nov 13;282(1):478-485. </li><br>
+
<li>Waters LS, Sandoval M, and Storz G. The<i> Escherichia coli</i> MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis. J Bacteriol 2011 Nov; 193(21) 5887-97.</li></br>
-
<li> Rude M.A, Baron T.S, Brubaker S, Alibhai M, Del Cardayre S.B, and Schirmer A. Terminal olefin (1-alkene) biosynthesis by a novel p450 fatty acid decarboxylase from Jeotgalicoccus species. Applied and Environmental Microbiology 2011 Mar;77(5):1718–1727.</li><br>
 
-
<li> Clemente J.S, Fedorak P.M. A review of the occurrences, analyses, toxicity, and biodegradation of naphthenic acids. Chemosphere 2005 Feb 6;60(5):585-600.</li><br>
+
<li>Wright JK, Overath P. Purification of the lactose:H+ carrier of <i>Escherichia coli</i> and characterization of galactoside binding and transport. Eur J Biochem.1984 Feb 1;138(3):497-508.</li><br>
-
<li> Frank R.A, Fischer K, Kavanagh R, Burnison B.K, Aresenault G, Headley J, Peru K.M, VanDerKraak G, Solomon K. Effect of Carboxylic Acid Content on the Acute Toxicity of Oil Sands Naphthenic Acids. EnvironSciTechnol 2009 Dec 11;43(2):266–271.</li><br>
+
<li>Xiong AS, Peng RH, Cheng ZM, Li Y, Liu JG, Zhuang J, Gao F, Xu F, Qiao YS, Zhang Z, Chen JM, Yao QH. Concurrent mutations in six amino acids in beta-glucuronidase improve its thermostability. Protein Eng Des Sel. 2007 Jul;20(7):319-25. Epub 2007 Jun 8. </li><br>
-
<li> Slavcheva E, Shone B, Turnbull A. Review of napthenic acid corrosion in oilrefining. British Corrosion Journal 1999 Feb;34(2):125-131. </li><br>
+
<li>Xu P, Yu P, Li FP, Cai XF, Ma CQ. Microbial degradation of sulfur, nitrogen and oxygen heterocycles. Trends in Microbiology 2006; 14(9):398-405.</li><br>
-
<li> Behar F.H, Albrecht P. Correlations between carboxylic acids and hydrocarbons in several crude oils alteration by biodegradation. Organic Geochemistry 1984;6:597-604. </li><br>
+
<li>Yoshimura F, Nikaido H. Permeability of Pseudomonas aeruginosa outer membrane to hydrophilic solutes. J Bacteriol. 1982 Nov;152(2):636-42. </li><br>
-
<li>German Collection of Microorganisms and Cell Cultures (DSMZ): Nocardia iowensis. https://www.dsmz.de/catalogues/details/culture/DSM-45197.html (retrieved 8/28/2012)</li><br>
+
<li>Young R, Bremer H. Polypeptide-chain-elongation rate in <i>Escherichia coli</i> B/r as a function of growth rate. Biochem J. 1976 Nov 15;160(2):185-94. </li><br>
-
<li>UW iGEM: Diesel Production Background. https://2011.igem.org/Team:Washington/Alkanes/Background (retrieved 8/28/2012)</li><br>
+
<li>Zeuthen P, Knudsen KG, Whitehurst DD.Organic nitrogen compounds in gas oil blends, their hydrotreated products and the importance to hydrotreatment. Catalysis Today Feb 2001; 65(2-4):307-314.</li><br>
-
<li>Parts Registry: The PetroBrick – Strong Constitutive Expression of ADC and AAR in pSB1C3. http://partsregistry.org/wiki/index.php?title=Part:BBa_K590025 (retrieved 8/28/2012)</li><br>
+
<li>Zhang X, Wiseman S, Yu H, Liu H, Giesy JP, Hecker M. Assessing the toxicity of naphthenic acids using a microbial genome wide live cell reporter array system. Environ Sci Technol 2011 Mar 1;45(5):1984-1991.</li><br>
-
<li>Asenjo J.A. (1949).Bioreactor system design. New York (NY): Marcel Dekker Inc.</li></br>
+
<li>Zhang Y, Nelson M, Nietfeldt JW, Burbank DE, Van Etten JL.Characterization of Chlorella virus PBCV-1 CviAII restriction andmodification system. Nucleic Acids Res 1992;20(20):5351-5356.</li><br>
-
<li>Reit K., & Tramper J. (1991). Basic bioreactor design. New York (NY):Marcel Dekker Inc.</li></br>
+
<li>Zhu G, Pang K, Parkin G. New Modes for Coordination of Aromatic Heterocyclic Nitrogen Compounds to Molybdenum:  Catalytic Hydrogenation of Quinoline, Isoquinoline, and Quinoxaline by Mo(PMe<sub>3</sub>)<sub>4</sub>H<sub>4</sub>. Journal of the American Chemical Society 2008; 130(5):1564-1565. </li><br>
-
<li>Becker SA, Feist AM, Mo ML, Hannum G, Palsson BØ, Herrgard MJ. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nature Protocols 2 2007 Mar; 727-723.</li></br>
 
-
<li>Becker SA, Feist AM, Mo ML, Hannum G, Palsson BØ, Herrgard MJ. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nature Protocols 6 2011 Aug; 1290-1307.</li></br>
 
-
<li>Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Molecular Systems Biology 3 2007 Jun; 121.</li></br>
 
-
<li>TOMLAB Optimization, MatLab Optimization, http://tomopt.com/tomlab/</li></br>
 
-
 
-
<li>Gopinath AV, Russell D. An Inexpensive Field-Portable Programmable Potentiostat. Chem.Educator.2006 July;11:23-28.</li></br>
 
-
 
-
<li>Biran I, Levcov K, Hengge-Aronis R, Ron EZ, Rishpon J. On-line monitoring of gene expression. Microbiology.1999 April;145:2129-2133.</li></br>
 
-
 
-
<li>Waters LS, Sandoval M, and Storz G. <i>The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis.</i> J Bacteriol 2011 Nov; 193(21) 5887-97.</li></br>
 
-
 
-
<li>Ramesh A, Wakeman CA, and Winkler WC. <i>Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes.</i> J Mol Biol 2011 Apr 8; 407(4) 556-70. </li></br>
 
-
 
-
<li>Helmann J. <i>Measuring metals with RNA.</i> J Mol Cell 2007 Sept 21; 27(6) 859-860. </li></br>
 
-
 
-
<li>Daus B, Mattusch J, Paschke A, Wennrich R, and Weiss H. <i>Kinetics of the arsenite oxidation in seepage water from a tin mill tailings pond.</i> Talanta 2000 May 5; 51(6) 1087-95. </li></br>
 
-
 
-
<li>Cromie MJ, Groisman EA. <i>Promoter and riboswitch control of the Mg2+ transporter MgtA from Salmonella enterica. </i>J Bacteriol 2010 Jan;192(2):604-607.</li></br>
 
-
 
-
<li>Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS. Riboswitches: the oldest mechanism for the regulation of gene expression? Trends Genet 2004 Jan;20(1):44-50.</li></br>
 
-
<li>Waters LS, Sandoval M, Storz G. <i>The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis.</i> J Bacteriol 2011 Nov;193(21):5887-5897. </li></br>
 
</ul>
</ul>

Latest revision as of 04:25, 17 December 2012

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  • Xiong AS, Peng RH, Cheng ZM, Li Y, Liu JG, Zhuang J, Gao F, Xu F, Qiao YS, Zhang Z, Chen JM, Yao QH. Concurrent mutations in six amino acids in beta-glucuronidase improve its thermostability. Protein Eng Des Sel. 2007 Jul;20(7):319-25. Epub 2007 Jun 8.

  • Xu P, Yu P, Li FP, Cai XF, Ma CQ. Microbial degradation of sulfur, nitrogen and oxygen heterocycles. Trends in Microbiology 2006; 14(9):398-405.

  • Yoshimura F, Nikaido H. Permeability of Pseudomonas aeruginosa outer membrane to hydrophilic solutes. J Bacteriol. 1982 Nov;152(2):636-42.

  • Young R, Bremer H. Polypeptide-chain-elongation rate in Escherichia coli B/r as a function of growth rate. Biochem J. 1976 Nov 15;160(2):185-94.

  • Zeuthen P, Knudsen KG, Whitehurst DD.Organic nitrogen compounds in gas oil blends, their hydrotreated products and the importance to hydrotreatment. Catalysis Today Feb 2001; 65(2-4):307-314.

  • Zhang X, Wiseman S, Yu H, Liu H, Giesy JP, Hecker M. Assessing the toxicity of naphthenic acids using a microbial genome wide live cell reporter array system. Environ Sci Technol 2011 Mar 1;45(5):1984-1991.

  • Zhang Y, Nelson M, Nietfeldt JW, Burbank DE, Van Etten JL.Characterization of Chlorella virus PBCV-1 CviAII restriction andmodification system. Nucleic Acids Res 1992;20(20):5351-5356.

  • Zhu G, Pang K, Parkin G. New Modes for Coordination of Aromatic Heterocyclic Nitrogen Compounds to Molybdenum:  Catalytic Hydrogenation of Quinoline, Isoquinoline, and Quinoxaline by Mo(PMe3)4H4. Journal of the American Chemical Society 2008; 130(5):1564-1565.