Team/CINVESTAV-IPN-UNAM MX/Light Response.htm

From 2012.igem.org

(Difference between revisions)
 
(17 intermediate revisions not shown)
Line 5: Line 5:
<style type="text/css">
<style type="text/css">
 +
 +
#top-section {
 +
position: relative;
 +
height: 20px;
 +
width: 975px;
 +
margin: 0 auto 0 auto;
 +
border-left: hidden;
 +
border-right: hidden;
 +
border-bottom: hidden;
 +
}
* {
* {
Line 12: Line 22:
body {
body {
-
background: #FFFFFF;
+
background: #FFFFFF url(https://static.igem.org/mediawiki/2012/f/f3/Fondo_bod.jpg) repeat-x;
text-align: justify;
text-align: justify;
font-family: Georgia, "Times New Roman", Times, serif;
font-family: Georgia, "Times New Roman", Times, serif;
Line 252: Line 262:
margin-bottom: .1em;
margin-bottom: .1em;
visibility:hidden;
visibility:hidden;
 +
}
 +
 +
img[src*="/wiki/skins/common/images/wiki.png"]{
 +
    width:0;
 +
    height:0px;
 +
    padding-right:975px;
 +
    background:transparent url(https://2011.igem.org/wiki/skins/common/images/wiki.png) top left no-repeat;
}
}
Line 264: Line 281:
<ul>
<ul>
<li><a href="home.htm">Home</a></li>
<li><a href="home.htm">Home</a></li>
-
<li><a href="#">Rhodofactory</a></li>
+
<li class="active"><a href="rhodofactory.htm">Rhodofactory</a></li>
<li><a href="promoterselection.htm">Promoter selection </a></li>
<li><a href="promoterselection.htm">Promoter selection </a></li>
-
<li><a href="#">results </a></li>
+
<li><a href="results.htm">results </a></li>
-
<li><a href="#">Perspectives</a></li>
+
<li><a href="perspectives.htm">Perspectives</a></li>
-
<li class="active"><a href="#">Modeling</a></li>
+
<li><a href="Modelling.htm">Modeling</a></li>
<li><a href="aboutus.htm">About us</a> </li>
<li><a href="aboutus.htm">About us</a> </li>
-
<li><a href="#">outreach</a></li>
+
<li><a href="outreach.htm">outreach</a></li>
</ul>
</ul>
</div>
</div>
Line 282: Line 299:
<div id="context">
<div id="context">
 
 
-
<h1><em>Light & Oxygen Response: AppA/PpsR Regulation System! </em></h1>
+
<h1><em>Light & Oxygen Response: AppA/PpsR <br /><br />Regulation System! </em></h1>
-
    </br>
+
<p>This is a repressor/antirepressor system, which under high oxygen tension; PpsR represses GFP expression by avoiding RNA polymerase binding  
-
<p>This is a repressor/antirepressor system, which under high oxygen tension; PpsR represses GFP expression by binding its target sequence
+
the promoter sequence.
-
avoiding RNA polymerase binding.<br>
+
  When oxygen concentration decreases and in presence of light AppA has a conformational change and can bind with PpsR, this complex prevents the union of
-
 
+
-
  When oxygen concentration decreases AppA has a conformational change and can bind with PpsR, this complex prevents the union of
+
  PpsR to its target sequence, thus GFP expression can begin.<br>
  PpsR to its target sequence, thus GFP expression can begin.<br>
-
  Also, when blue light fall upon the complex, there is another conformational change in AppA protein, this change breaks the complex
+
  (See the next video for a visual explanation).</p>
-
and inhibits the GFP expression. (See the next video for a visual explanation).</p>
+
<div align="center"><iframe width="480" height="360" src="http://www.youtube.com/embed/XBNRLq9pL8c" frameborder="0" allowfullscreen></iframe></div><br>
<div align="center"><iframe width="480" height="360" src="http://www.youtube.com/embed/XBNRLq9pL8c" frameborder="0" allowfullscreen></iframe></div><br>
<p id="text2">Our biobricks </p>
<p id="text2">Our biobricks </p>
Line 307: Line 321:
  in the absence of oxygen. PpsR directly represses transcription of most carotenoid and pigment synthesis genes, photosystems operons, and
  in the absence of oxygen. PpsR directly represses transcription of most carotenoid and pigment synthesis genes, photosystems operons, and
  genes involved in tetrapyrrole biosynthesis (Gomelsky and Kaplan 1995). The upstream regions of these genes contain two PpsR binding sites,
  genes involved in tetrapyrrole biosynthesis (Gomelsky and Kaplan 1995). The upstream regions of these genes contain two PpsR binding sites,
-
  TGTcN10gACA.<br>
+
  TGTcN10gACA.<br><br>
-
  A second protein called AppA, which has no known homologues, plays a role in controlling gene expression in R. sphaeroides in response to both
+
  A second protein called AppA, which has no known homologues, plays a role in controlling gene expression in <em>R. sphaeroides</em> in response to both
  light and O2 by acting as an antirepressor of PpsR. Our parts (appa, ppsr and ppsr-promoter) were synthesized by Genescript, and are codon
  light and O2 by acting as an antirepressor of PpsR. Our parts (appa, ppsr and ppsr-promoter) were synthesized by Genescript, and are codon
-
  optimized for R. sphaeroides.</p>
+
  optimized for <em>R. sphaeroides.</em></p>
  <hr>
  <hr>
  <p id="refe">References<br>
  <p id="refe">References<br>
-
  1. Gomelsky L., Moskvin L., Stenzel A., Jones D., Donohue T. and Gomelsky M.(2008) Hierarchical Regulation of Photosynthesis
+
  1. Gomelsky L., Moskvin L., Stenzel A., Jones D., Donohue T. and Gomelsky M.(2008) <strong>Hierarchical Regulation of Photosynthesis
-
  Gene Expression by the Oxygen-Responsive PrrBA and AppA-PpsR Systems of Rhodobacter sphaeroides. J. Bacteriol.
+
  Gene Expression by the Oxygen-Responsive PrrBA and AppA-PpsR Systems of <em>Rhodobacter sphaeroides.</em></strong> J. Bacteriol.
  Dec. 2008, p. 8106–8114 Vol. 190, No. 24<br>
  Dec. 2008, p. 8106–8114 Vol. 190, No. 24<br>
-
  2. Moskvin, O. V., L. Gomelsky, and M. Gomelsky. (2005). Transcriptome analysis of the Rhodobacter sphaeroides PpsR
+
  2. Moskvin, O. V., L. Gomelsky, and M. Gomelsky. (2005). <strong>Transcriptome analysis of the <em>Rhodobacter sphaeroides</em> PpsR
-
  regulon: PpsR as a master regulator of photosystem development. J. Bacteriol. 187:2148–2156.<br>
+
  regulon: PpsR as a master regulator of photosystem development.</strong> J. Bacteriol. 187:2148–2156.<br>
-
  3. Gomelsky, M., and S. Kaplan. (1995). Genetic evidence that PpsR from Rhodobacter sphaeroides 2.4.1 functions as a
+
  3. Gomelsky, M., and S. Kaplan. (1995). <strong>Genetic evidence that PpsR from <em>Rhodobacter sphaeroides.</em> 2.4.1 functions as a
-
  repressor of puc and bchF expression. J. Bacteriol. 177:1634–1637. <br>
+
  repressor of puc and bchF expression.</strong> J. Bacteriol. 177:1634–1637. <br>
-
  4. Gomelsky, M., and S. Kaplan. (1995). appA, a novel gene encoding a transacting factor involved in the regulation of
+
  4. Gomelsky, M., and S. Kaplan. (1995). <strong>AppA, a novel gene encoding a transacting factor involved in the regulation of
-
  photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1. J. Bacteriol. 177:4609–4618.
+
  photosynthesis gene expression in <em>Rhodobacter sphaeroides.</em> 2.4.1.</strong> J. Bacteriol. 177:4609–4618.
</p>
</p>
   
   
Line 345: Line 359:
<!-- end #page -->
<!-- end #page -->
<div id="piedepagina">
<div id="piedepagina">
-
<p align="center"> Rhodofactory 2012 </p>
+
<p align="center"> <strong>Rhodofactory 2012</strong> </p>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Icytdf.png" alt="icytdf" width="70" height="99" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Icytdf.png" alt="icytdf" width="90" height="82" /></div>
</div>
</div>
<div id="sponsors">
<div id="sponsors">
Line 354: Line 368:
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fb/Bio.png" alt="bio" width="73" height="99" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fb/Bio.png" alt="bio" width="80" height="97" /></div>
</div>
</div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/d/d6/Fermentas.png" alt="fermentAS" width="82" height="45" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/d/d6/Fermentas.png" alt="fermentAS" width="82" height="45" /></div>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/a/a3/Cinestav.png" alt="cinestav" width="74" height="99" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/a/a3/Cinestav.png" alt="cinestav" width="74" height="91" /></div>
</div>
</div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/9/9b/Genscript.png" alt="genscript" width="83" height="45" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/9/9b/Genscript.png" alt="genscript" width="83" height="45" /></div>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/1/16/Unam.png" alt="unam" width="78" height="91" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/1/16/Unam.png" alt="unam" width="83" height="93" /></div>
</div>
</div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/c/c9/Gto.png" alt="gto" width="84" height="46" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/c/c9/Gto.png" alt="gto" width="84" height="46" /></div>
     <div id="sponsors">
     <div id="sponsors">
-
       <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fa/Qimica.png" alt="quimica" width="72" height="80" /></div>
+
       <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fa/Qimica.png" alt="quimica" width="80" height="72" /></div>
     </div>
     </div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/7/73/Valaner.png" alt="valaner" width="84" height="48" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/7/73/Valaner.png" alt="valaner" width="84" height="48" /></div>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/7/79/Ipn.png" alt="ipn" width="75" height="97" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/7/79/Ipn.png" alt="ipn" width="70" height="96" /></div>
</div>
</div>

Latest revision as of 03:31, 27 October 2012

Rho

Light & Oxygen Response: AppA/PpsR

Regulation System!

This is a repressor/antirepressor system, which under high oxygen tension; PpsR represses GFP expression by avoiding RNA polymerase binding the promoter sequence. When oxygen concentration decreases and in presence of light AppA has a conformational change and can bind with PpsR, this complex prevents the union of PpsR to its target sequence, thus GFP expression can begin.
(See the next video for a visual explanation).


Our biobricks

The first biobrick consists in the complete light-oxygen dependent system, AppA and PpsR, each one with Ribosome Binding Site, under a Medium strength promoter (J23104), this first biobrick also it has the PpsR dependent promoter and GFP as a reporter gene.

rodo02


The second circuit is just the PpsR dependent promoter and GFP as a reporter gene.

rodo03

We were inspired in:

This system is inspired in AppA/PpsR repressor/antirepressor system from Rhodobacter sphaeroides. The PpsR protein is a master repressor of Photosynthesis (PS) genes (Moskvin and Gomelsky 2005). Inactivation of the ppsR gene is enough to turn on PS gene expression and formation of the photosynthetic apparatus even at a high oxygen concentration, whereas ppsR overexpression is sufficient to block PS development even in the absence of oxygen. PpsR directly represses transcription of most carotenoid and pigment synthesis genes, photosystems operons, and genes involved in tetrapyrrole biosynthesis (Gomelsky and Kaplan 1995). The upstream regions of these genes contain two PpsR binding sites, TGTcN10gACA.

A second protein called AppA, which has no known homologues, plays a role in controlling gene expression in R. sphaeroides in response to both light and O2 by acting as an antirepressor of PpsR. Our parts (appa, ppsr and ppsr-promoter) were synthesized by Genescript, and are codon optimized for R. sphaeroides.

References
1. Gomelsky L., Moskvin L., Stenzel A., Jones D., Donohue T. and Gomelsky M.(2008) Hierarchical Regulation of Photosynthesis Gene Expression by the Oxygen-Responsive PrrBA and AppA-PpsR Systems of Rhodobacter sphaeroides. J. Bacteriol. Dec. 2008, p. 8106–8114 Vol. 190, No. 24
2. Moskvin, O. V., L. Gomelsky, and M. Gomelsky. (2005). Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development. J. Bacteriol. 187:2148–2156.
3. Gomelsky, M., and S. Kaplan. (1995). Genetic evidence that PpsR from Rhodobacter sphaeroides. 2.4.1 functions as a repressor of puc and bchF expression. J. Bacteriol. 177:1634–1637.
4. Gomelsky, M., and S. Kaplan. (1995). AppA, a novel gene encoding a transacting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides. 2.4.1. J. Bacteriol. 177:4609–4618.

 

Rhodofactory 2012

icytdf
osli
bio
fermentAS
cinestav
genscript
unam
gto
quimica
valaner
ipn

Retrieved from "http://2012.igem.org/Team/CINVESTAV-IPN-UNAM_MX/Light_Response.htm"