Team:ZJU-China/labnote7.htm

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<h2>Week 7 (07.30-08.05): Test part BBa_K537009 and make our own parts</h2>
<h2>Week 7 (07.30-08.05): Test part BBa_K537009 and make our own parts</h2>
<h3>July 30</h3>
<h3>July 30</h3>
-
<p>1. Miniprep plasmid of K738000-7-29.</p>
+
<p align="justify">1. Miniprep plasmid of K738000-7-29.</p>
-
<p>Name: K738000-7-30-1        Concentration: 60.0 ng/ul        A260/280: 1.86</p>
+
<p align="justify">Name: K738000-7-30-1        Concentration: 60.0 ng/ul        A260/280: 1.86</p>
-
<p>Name: K738000-7-30-2        Concentration: 47.1 ng/ul        A260/280: 1.95</p>
+
<p align="justify">Name: K738000-7-30-2        Concentration: 47.1 ng/ul        A260/280: 1.95</p>
-
<p>Name: K738000-7-30-3        Concentration: 90.1 ng/ul        A260/280: 1.95</p>
+
<p align="justify">Name: K738000-7-30-3        Concentration: 90.1 ng/ul        A260/280: 1.95</p>
-
<p>Name: K738000-7-30-10      Concentration: 43.6 ng/ul        A260/280: 1.98</p>
+
<p align="justify">Name: K738000-7-30-10      Concentration: 43.6 ng/ul        A260/280: 1.98</p>
-
<p>PCR of K738000-7-30</p>
+
<p align="justify">PCR of K738000-7-30</p>
-
<p><img src="https://static.igem.org/mediawiki/igem.org/d/df/Zju_notebook15.jpg"  width="80%"><p>
+
<p align="justify"><div class="floatC"><img src="https://static.igem.org/mediawiki/igem.org/d/df/Zju_notebook15.jpg"  width="500px"><p align="justify"></div>
-
<p>Unfortunately, there was a slight electrophoretic band in control. But the sequencing result came later verified that we've got the correct ligation product.</p>
+
<p align="justify">Unfortunately, there was a slight electrophoretic band in control. But the sequencing result came later verified that we've got the correct ligation product.</p>
-
<p>2. Pick up single colonies from plate of FB-7-26-2 and amplify it in LB liquid medium.</p>
+
<p align="justify">2. Pick up single colonies from plate of FB-7-26-2 and amplify it in LB liquid medium.</p>
<h3>July 31</h3>
<h3>July 31</h3>
-
<p>1. Amplify backbone pSB1C3:</p>
+
<p align="justify">1. Amplify backbone pSB1C3:</p>
-
<p>Double digest K738000-7-23-3 with EcoR1 and Pst1 and got linear backbone through DNA gel extraction.</p>
+
<p align="justify">Double digest K738000-7-23-3 with EcoR1 and Pst1 and got linear backbone through DNA gel extraction.</p>
-
<p>2. Miniprep plasmid of K738000-7-29 and FA-7-28-1.</p>
+
<p align="justify">2. Miniprep plasmid of K738000-7-29 and FA-7-28-1.</p>
-
<p>Name: K738000-7-30-4        Concentration: 83.9 ng/ul        A260/280: 1.94</p>
+
<p align="justify">Name: K738000-7-30-4        Concentration: 83.9 ng/ul        A260/280: 1.94</p>
-
<p>Name: K738000-7-30-5        Concentration: 50.1 ng/ul        A260/280: 2.00</p>
+
<p align="justify">Name: K738000-7-30-5        Concentration: 50.1 ng/ul        A260/280: 2.00</p>
-
<p>Name: K738000-7-30-11      Concentration: 46.0 ng/ul        A260/280: 1.97</p>
+
<p align="justify">Name: K738000-7-30-11      Concentration: 46.0 ng/ul        A260/280: 1.97</p>
-
<p>Name: FA-7-28-1            Concentration: 33.0 ng/ul        A260/280: 2.04</p>
+
<p align="justify">Name: FA-7-28-1            Concentration: 33.0 ng/ul        A260/280: 2.04</p>
-
<p><img src="https://static.igem.org/mediawiki/igem.org/e/e6/Zju_notebook16.jpg"  width="80%"><p>
+
<p align="justify"><div class="floatC"><img src="https://static.igem.org/mediawiki/igem.org/e/e6/Zju_notebook16.jpg"  width="500px"><p align="justify"></div>
<h3>August 01</h3>
<h3>August 01</h3>
-
<p>Double digest K738000-7-23-2 and K738000-7-23-3 with EcoR1 and Pst1 and got linear backbone through DNA gel extraction.</p>
+
<p align="justify">Double digest K738000-7-23-2 and K738000-7-23-3 with EcoR1 and Pst1 and got linear backbone through DNA gel extraction.</p>
<h3>August 02</h3>
<h3>August 02</h3>
-
<p>1. Transform part K537009 into DH5&alpha; to acquire experience, named venus-8-2.</p>
+
<p align="justify">1. Transform part K537009 into DH5&alpha; to acquire experience, named venus-8-2.</p>
-
<p>2. Transform original pCJDFA and pCJDFB into DH5&alpha;, named FA-8-2 and FB-8-2.</p>
+
<p align="justify">2. Transform original pCJDFA and pCJDFB into DH5&alpha;, named FA-8-2 and FB-8-2.</p>
-
<p>3. Transform part K398326 into DH10&beta; to amplify backbone pSB1C3 easier, BB-8-2.</p>
+
<p align="justify">3. Transform part K398326 into DH10&beta; to amplify backbone pSB1C3 easier, BB-8-2.</p>
<h3>August 03</h3>
<h3>August 03</h3>
-
<p>1. Amplify BB-8-2, FA-8-2 and FB -8-2 for minipreparing plasmids later, named BB-8-3, FA-8-3 and FB-8-3.</p>
+
<p align="justify">1. Amplify BB-8-2, FA-8-2 and FB -8-2 for minipreparing plasmids later, named BB-8-3, FA-8-3 and FB-8-3.</p>
<h3>August 04</h3>
<h3>August 04</h3>
-
<p>1. Miniprep plasmid of BB-8-3 FA-8-3 and FB-8-3.</p>
+
<p align="justify">1. Miniprep plasmid of BB-8-3 FA-8-3 and FB-8-3.</p>
-
<p>Name: BB-8-4        Concentration: 76.2 ng/ul        A260/280: 1.91</p>
+
<p align="justify">Name: BB-8-4        Concentration: 76.2 ng/ul        A260/280: 1.91</p>
-
<p>Name: BB-8-4        Concentration: 40.3 ng/ul        A260/280: 1.90</p>
+
<p align="justify">Name: BB-8-4        Concentration: 40.3 ng/ul        A260/280: 1.90</p>
-
<p>Name: FA-8-4        Concentration: 19.6 ng/ul        A260/280: 1.97</p>
+
<p align="justify">Name: FA-8-4        Concentration: 19.6 ng/ul        A260/280: 1.97</p>
-
<p>Name: FB-8-4        Concentration: 35.9 ng/ul        A260/280: 1.98</p>
+
<p align="justify">Name: FB-8-4        Concentration: 35.9 ng/ul        A260/280: 1.98</p>
-
<p><img src="https://static.igem.org/mediawiki/igem.org/c/cc/Zju_notebook17.jpg"  width="80%"><p>
+
<p align="justify"><div class="floatC"><img src="https://static.igem.org/mediawiki/igem.org/c/cc/Zju_notebook17.jpg"  width="500px"><p align="justify"></div>
-
<p>Unfortunately, the PCR results were so different from that of original plasmids. We couldn't figure out the reason.</p>
+
<p align="justify">Unfortunately, the PCR results were so different from that of original plasmids. We couldn't figure out the reason.</p>
-
<p>2. Amplify Venus-8-2 in LB liquid medium, named Venus-8-4.</p>
+
<p align="justify">2. Amplify Venus-8-2 in LB liquid medium, named Venus-8-4.</p>
-
<p>3. Transform FAM-8-4-1, FAM-8-4-1, FBP-8-4-1 and FBP-8-4-1 into DH5&alpha;.</p>
+
<p align="justify">3. Transform FAM-8-4-1, FAM-8-4-1, FBP-8-4-1 and FBP-8-4-1 into DH5&alpha;.</p>
<h3>August 05</h3>
<h3>August 05</h3>
-
<p>1. Pick up single colonies from plate of FAM-8-4 and FBP-8-4 and amplify it in LB liquid medium and LB plates.</p>
+
<p align="justify">1. Pick up single colonies from plate of FAM-8-4 and FBP-8-4 and amplify it in LB liquid medium and LB plates.</p>
-
<p>2. Colony PCR of FAM-8-4-2 and FBP-8-4-2</p>
+
<p align="justify">2. Colony PCR of FAM-8-4-2 and FBP-8-4-2</p>
-
<p><img src="https://static.igem.org/mediawiki/igem.org/c/c8/Zju_notebook18.jpg"  width="80%"><p>
+
<p align="justify"><div class="floatC"><img src="https://static.igem.org/mediawiki/igem.org/c/c8/Zju_notebook18.jpg"  width="500px"><p align="justify"></div>
-
<p>3. Double digest BB-8-4-1 with (1) EcoR1 and Pst1, (2) Xba1 and Spe1, get linear backbone through PCR cleanup kit.</p>
+
<p align="justify">3. Double digest BB-8-4-1 with (1) EcoR1 and Pst1, (2) Xba1 and Spe1, get linear backbone through PCR cleanup kit.</p>
-
<p>4. Miniprep plasmid of Venus-8-4.</p>
+
<p align="justify">4. Miniprep plasmid of Venus-8-4.</p>
-
<p>Name: Venus-8-5-1        Concentration: 168.1 ng/ul        A260/280: 1.91</p>
+
<p align="justify">Name: Venus-8-5-1        Concentration: 168.1 ng/ul        A260/280: 1.91</p>
-
<p>Name: Venus-8-5-1        Concentration: 83.4 ng/ul          A260/280: 1.93</p>
+
<p align="justify">Name: Venus-8-5-1        Concentration: 83.4 ng/ul          A260/280: 1.93</p>
-
<p>5. Pick up single colonies from plate of FAM-8-4-1, FAM-8-4-2, FBP-8-4-1 and FBP-8-4-2 and amplify it in LB liquid medium and LB plates. Miniprep plasmid of them.</p>
+
<p align="justify">5. Pick up single colonies from plate of FAM-8-4-1, FAM-8-4-2, FBP-8-4-1 and FBP-8-4-2 and amplify it in LB liquid medium and LB plates. Miniprep plasmid of them.</p>
-
<p>Name: FAM-8-5-1        Concentration: 69.9 ng/ul          A260/280: 1.95</p>
+
<p align="justify">Name: FAM-8-5-1        Concentration: 69.9 ng/ul          A260/280: 1.95</p>
-
<p>Name: FAM-8-5-2        Concentration: 57.3 ng/ul          A260/280: 1.95</p>
+
<p align="justify">Name: FAM-8-5-2        Concentration: 57.3 ng/ul          A260/280: 1.95</p>
-
<p>Name: FAM-8-5-3        Concentration: 86.8 ng/ul          A260/280: 2.06</p>
+
<p align="justify">Name: FAM-8-5-3        Concentration: 86.8 ng/ul          A260/280: 2.06</p>
-
<p>Name: FBP-8-5-2        Concentration: 21.0 ng/ul          A260/280: 2.14</p>
+
<p align="justify">Name: FBP-8-5-2        Concentration: 21.0 ng/ul          A260/280: 2.14</p>
-
<p>Name: FBP-8-5-3        Concentration: 15.5 ng/ul          A260/280: 2.14</p>
+
<p align="justify">Name: FBP-8-5-3        Concentration: 15.5 ng/ul          A260/280: 2.14</p>
-
<p>Name: FBP-8-5-5        Concentration: 15.6 ng/ul          A260/280: 2.07</p>
+
<p align="justify">Name: FBP-8-5-5        Concentration: 15.6 ng/ul          A260/280: 2.07</p>
-
<p>6. Co-transform FA-8-5-3, FB-8-5-2 and D0-4 into BL21*(DE3). Co-transform FA-8-5-3 and FB-8-5-2 into BL21*(DE3).</p>
+
<p align="justify">6. Co-transform FA-8-5-3, FB-8-5-2 and D0-4 into BL21*(DE3). Co-transform FA-8-5-3 and FB-8-5-2 into BL21*(DE3).</p>
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Latest revision as of 17:17, 26 October 2012

HOME

Week 7 (07.30-08.05): Test part BBa_K537009 and make our own parts

July 30

1. Miniprep plasmid of K738000-7-29.

Name: K738000-7-30-1 Concentration: 60.0 ng/ul A260/280: 1.86

Name: K738000-7-30-2 Concentration: 47.1 ng/ul A260/280: 1.95

Name: K738000-7-30-3 Concentration: 90.1 ng/ul A260/280: 1.95

Name: K738000-7-30-10 Concentration: 43.6 ng/ul A260/280: 1.98

PCR of K738000-7-30

Unfortunately, there was a slight electrophoretic band in control. But the sequencing result came later verified that we've got the correct ligation product.

2. Pick up single colonies from plate of FB-7-26-2 and amplify it in LB liquid medium.

July 31

1. Amplify backbone pSB1C3:

Double digest K738000-7-23-3 with EcoR1 and Pst1 and got linear backbone through DNA gel extraction.

2. Miniprep plasmid of K738000-7-29 and FA-7-28-1.

Name: K738000-7-30-4 Concentration: 83.9 ng/ul A260/280: 1.94

Name: K738000-7-30-5 Concentration: 50.1 ng/ul A260/280: 2.00

Name: K738000-7-30-11 Concentration: 46.0 ng/ul A260/280: 1.97

Name: FA-7-28-1 Concentration: 33.0 ng/ul A260/280: 2.04

August 01

Double digest K738000-7-23-2 and K738000-7-23-3 with EcoR1 and Pst1 and got linear backbone through DNA gel extraction.

August 02

1. Transform part K537009 into DH5α to acquire experience, named venus-8-2.

2. Transform original pCJDFA and pCJDFB into DH5α, named FA-8-2 and FB-8-2.

3. Transform part K398326 into DH10β to amplify backbone pSB1C3 easier, BB-8-2.

August 03

1. Amplify BB-8-2, FA-8-2 and FB -8-2 for minipreparing plasmids later, named BB-8-3, FA-8-3 and FB-8-3.

August 04

1. Miniprep plasmid of BB-8-3 FA-8-3 and FB-8-3.

Name: BB-8-4 Concentration: 76.2 ng/ul A260/280: 1.91

Name: BB-8-4 Concentration: 40.3 ng/ul A260/280: 1.90

Name: FA-8-4 Concentration: 19.6 ng/ul A260/280: 1.97

Name: FB-8-4 Concentration: 35.9 ng/ul A260/280: 1.98

Unfortunately, the PCR results were so different from that of original plasmids. We couldn't figure out the reason.

2. Amplify Venus-8-2 in LB liquid medium, named Venus-8-4.

3. Transform FAM-8-4-1, FAM-8-4-1, FBP-8-4-1 and FBP-8-4-1 into DH5α.

August 05

1. Pick up single colonies from plate of FAM-8-4 and FBP-8-4 and amplify it in LB liquid medium and LB plates.

2. Colony PCR of FAM-8-4-2 and FBP-8-4-2

3. Double digest BB-8-4-1 with (1) EcoR1 and Pst1, (2) Xba1 and Spe1, get linear backbone through PCR cleanup kit.

4. Miniprep plasmid of Venus-8-4.

Name: Venus-8-5-1 Concentration: 168.1 ng/ul A260/280: 1.91

Name: Venus-8-5-1 Concentration: 83.4 ng/ul A260/280: 1.93

5. Pick up single colonies from plate of FAM-8-4-1, FAM-8-4-2, FBP-8-4-1 and FBP-8-4-2 and amplify it in LB liquid medium and LB plates. Miniprep plasmid of them.

Name: FAM-8-5-1 Concentration: 69.9 ng/ul A260/280: 1.95

Name: FAM-8-5-2 Concentration: 57.3 ng/ul A260/280: 1.95

Name: FAM-8-5-3 Concentration: 86.8 ng/ul A260/280: 2.06

Name: FBP-8-5-2 Concentration: 21.0 ng/ul A260/280: 2.14

Name: FBP-8-5-3 Concentration: 15.5 ng/ul A260/280: 2.14

Name: FBP-8-5-5 Concentration: 15.6 ng/ul A260/280: 2.07

6. Co-transform FA-8-5-3, FB-8-5-2 and D0-4 into BL21*(DE3). Co-transform FA-8-5-3 and FB-8-5-2 into BL21*(DE3).

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