Team:Michigan/Notebook

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[[Team:Michigan/Notebook/Protocols]]
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!align="center"|[[Team:Michigan|Home]]
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!align="center"|[[Team:Michigan/Attributions|Attributions]]
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<h2>Increasing Recombinase HbiF and FimE Turnover Rate with LVA Degradation Tag </h2>
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<p>HbiF and LVA degradation tag were ordered from IDT with the following specifications.</p>
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<p> <span style="background-color:#E0771B;font-family:Courier, monospace;">EcoRI</span></p>
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<p> <span style="background-color:#C8E0DB;font-family:Courier, monospace;">SpeI</span></p>
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    <p><a href="/Team:Michigan/Project">Project</a> > <a href="/Team:Michigan/Noteboook">Notebook</a></p>
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<p> <span style="background-color:#86C67C;font-family:Courier, monospace;">AgeI</span></p>
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<p> <span style="background-color:#CD96CD;font-family:Courier, monospace;">NgoMIV</span></p>
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<p><br/>HbiF possesses an N-terminus in the (truncated) RFC10 format :</p>
 
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<p style="font-family:Courier, monospace;"><span style="background-color:#E0771B">GAATTC</span> GCGGCCGC T <span style="background-color:#E0B91B;">TCTAG</span> [ATG]</p>
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<p><br/>No extra amino acids are created by this  prefix, in comparison to the standard RFC25 prefix, which creates a serine and glycine. The suffix proceeds as follows:</p>
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<p style="font-family:Courier, monospace;"><span style="background-color:#86C67C;">ACCGGT</span> TAAT <span style="background-color:#C8E0DB">ACTAGT</span> A GCGGCCG <span style="background-color:#A9C9A4">CTGCAG</span> </p>
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<p>In order to properly attach the LVA degradation tag, the prefix of the tag sequence must be complementary to the suffix of Hbif. For this part, the prefix and suffix are reversed in comparison to above: the prefix is RFC25, and the suffix is RFC10, for reasons that are discussed below.</p>
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<h2>Cloning Team Notebook</h2>
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<iframe width=100% height=800; src="https://docs.google.com/document/pub?id=1bDaN8iqQjBHllPLosoQUs9Z9MZT4Q3pjOG3M_9UMEho&amp;embedded=true"></iframe>
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<h2>Prepare FimE for protein expression</h2>
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<iframe width=100% height=500; src="https://docs.google.com/document/pub?id=1bDaN8iqQjBHllPLosoQUs9Z9MZT4Q3pjOG3M_9UMEho&amp;embedded=true"></iframe>
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<h2>Team Reports</h2>
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Latest revision as of 02:36, 4 October 2012

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