Team:UT Dallas/notebook data
From 2012.igem.org
(One intermediate revision not shown) | |||
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June 6 | June 6 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 27: | Line 27: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
June 7 | June 7 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked and glycerol stocked made | Colonies picked and glycerol stocked made | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 54: | Line 54: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page3" class='notebook_page'> | <div id="page3" class='notebook_page'> | ||
Line 60: | Line 60: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
June 8 | June 8 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 95: | Line 95: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page4" class='notebook_page'> | <div id="page4" class='notebook_page'> | ||
Line 102: | Line 102: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
June 11 | June 11 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 125: | Line 125: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
June 12 | June 12 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 146: | Line 146: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 161: | Line 161: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page5" class='notebook_page'> | <div id="page5" class='notebook_page'> | ||
Line 167: | Line 167: | ||
June 13 | June 13 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Incubate constitutive promoter-RBS-GFP in LB carb broth overnight @ 37*C and 220 rpm | Incubate constitutive promoter-RBS-GFP in LB carb broth overnight @ 37*C and 220 rpm | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 177: | Line 177: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
June 14 | June 14 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stock and miniprep | Glycerol stock and miniprep | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 206: | Line 206: | ||
Test Digestion for each plasmid: correct results received | Test Digestion for each plasmid: correct results received | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
June 15 | June 15 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | prom-RBS-GFP: Concentration: 127 ng/ | + | prom-RBS-GFP: Concentration: 127 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page6" class='notebook_page'> | <div id="page6" class='notebook_page'> | ||
Line 232: | Line 232: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 16 | July 16 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformations | Transformations | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 255: | Line 255: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 17 | July 17 | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 301: | Line 301: | ||
<div id="page7" class='notebook_page'> | <div id="page7" class='notebook_page'> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 18 | July 18 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stocks made | Glycerol stocks made | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 320: | Line 320: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 236.2 ng/ | + | Concentration: 236.2 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 328: | Line 328: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 92.9 ng/ | + | Concentration: 92.9 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 336: | Line 336: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 60.6 ng/ | + | Concentration: 60.6 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 344: | Line 344: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 110.9 ng/ | + | Concentration: 110.9 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 351: | Line 351: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 366: | Line 366: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page8" class='notebook_page'> | <div id="page8" class='notebook_page'> | ||
Line 373: | Line 373: | ||
Gel Extraction | Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 380: | Line 380: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 10.8 ng/ | + | Concentration: 10.8 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 388: | Line 388: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 19.6 ng/ | + | Concentration: 19.6 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 396: | Line 396: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration: 6.2 ng/ | + | Concentration: 6.2 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 413: | Line 413: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 434: | Line 434: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page9" class='notebook_page'> | <div id="page9" class='notebook_page'> | ||
Line 441: | Line 441: | ||
July 19 | July 19 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformations | Transformations | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 470: | Line 470: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
July 20 | July 20 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 508: | Line 508: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
July 20 | July 20 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stocks & plasmid isolation | Glycerol stocks & plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 527: | Line 527: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 537: | Line 537: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Gel Extraction | Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLac-TetR: Concentration: 20.5 ng/ | + | pLac-TetR: Concentration: 20.5 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 550: | Line 550: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 562: | Line 562: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 580: | Line 580: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 20 | July 20 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Repeat Transformation | Repeat Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 609: | Line 609: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 21 | July 21 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 636: | Line 636: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 655: | Line 655: | ||
Digestion & Gel Extraction | Digestion & Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 661: | Line 661: | ||
</li> | </li> | ||
<li> | <li> | ||
- | LuxR: Concentration: 11.1 ng/ | + | LuxR: Concentration: 11.1 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LuxI: Concentration: 7.1 ng/ | + | LuxI: Concentration: 7.1 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page13" class='notebook_page'> | <div id="page13" class='notebook_page'> | ||
Line 674: | Line 674: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Line 680: | Line 680: | ||
July 22 | July 22 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LuxS: Concentration: 75.2 ng/ | + | LuxS: Concentration: 75.2 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LasI: Concentration: 90.1 ng/ | + | LasI: Concentration: 90.1 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | RBS-YFP: Concentration: 76.4 ng/ | + | RBS-YFP: Concentration: 76.4 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 23 | July 23 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
DIgestion and gel extraction | DIgestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 717: | Line 717: | ||
</li> | </li> | ||
<li> | <li> | ||
- | LasI (E/S) Concentration: 20.3 ng/ | + | LasI (E/S) Concentration: 20.3 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | RBS-YFP (X/P) Concentration: 18.2 ng/ | + | RBS-YFP (X/P) Concentration: 18.2 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
Line 729: | Line 729: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 741: | Line 741: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 760: | Line 760: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 772: | Line 772: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
July 23 | July 23 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stock and plasmid isolation | Glycerol stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 791: | Line 791: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 803: | Line 803: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 824: | Line 824: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 24 | July 24 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LuxS: Concentration: 85.9 ng/ | + | LuxS: Concentration: 85.9 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LuxI: Concentration:85.7 ng/ | + | LuxI: Concentration:85.7 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LasI: Concentration: 224.1 ng/ | + | LasI: Concentration: 224.1 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 847: | Line 847: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LuxI (S/P): Concentration: 25.5 ng/ | + | LuxI (S/P): Concentration: 25.5 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LasI (S/P): Concentration: 30.7 ng/ | + | LasI (S/P): Concentration: 30.7 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 859: | Line 859: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 874: | Line 874: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
Line 882: | Line 882: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 24 | July 24 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 906: | Line 906: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 25 | July 25 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 930: | Line 930: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 945: | Line 945: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLsrA (S/P): Concentration: 20.6 ng/ | + | pLsrA (S/P): Concentration: 20.6 ng/µl |
</li> | </li> | ||
Line 955: | Line 955: | ||
<li> | <li> | ||
- | pLuxR (S/P): Concentration: 18.7 ng/ | + | pLuxR (S/P): Concentration: 18.7 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 961: | Line 961: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 973: | Line 973: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 25 | July 25 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and plasmid isolation | Glycerol Stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 992: | Line 992: | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | Concentration 1: 194.8 ng/ | + | Concentration 1: 194.8 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | Concentartion 2: 117.2 ng/ | + | Concentartion 2: 117.2 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,002: | Line 1,002: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,015: | Line 1,015: | ||
</ul> | </ul> | ||
<p> | <p> | ||
- | Tetracycle Stock: 50 ng/ | + | Tetracycle Stock: 50 ng/?l |
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page18" class='notebook_page'> | <div id="page18" class='notebook_page'> | ||
<p> | <p> | ||
- | IPTG stock: 50 ng/ | + | IPTG stock: 50 ng/?l |
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 26 | July 26 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,052: | Line 1,052: | ||
Glycerol stock and plasmid isolation | Glycerol stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LuxI-RBS-YFP: Concentration: 70.8 ng/ | + | LuxI-RBS-YFP: Concentration: 70.8 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LasI-RBS-RFP: Concentration: 4.0 (to be repeated) ng/ | + | LasI-RBS-RFP: Concentration: 4.0 (to be repeated) ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,064: | Line 1,064: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,070: | Line 1,070: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 26 | July 26 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,095: | Line 1,095: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 27 | July 27 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stock and plasmid isolation | Glycerol stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pTetR: Concentration: 42.4 ng/ | + | pTetR: Concentration: 42.4 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | pLasR: Concentration: 62.2 ng/ | + | pLasR: Concentration: 62.2 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LuxI-RBS-YFP: Concentration: 120.9 ng/ | + | LuxI-RBS-YFP: Concentration: 120.9 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LasI-RBS-RFP: Concentration: 85 ng/ | + | LasI-RBS-RFP: Concentration: 85 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,129: | Line 1,129: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pTetR (S/P): Concentration: 17.4 ng/ | + | pTetR (S/P): Concentration: 17.4 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | pLasR (S/P): Concentration: 23.8 ng/ | + | pLasR (S/P): Concentration: 23.8 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LuxI-RBS-YFP (X/P): Concentration: 13.8 ng/ | + | LuxI-RBS-YFP (X/P): Concentration: 13.8 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LasI-RBS-RFP (X/P): Concentration: 8.9 ng/ | + | LasI-RBS-RFP (X/P): Concentration: 8.9 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,150: | Line 1,150: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,172: | Line 1,172: | ||
Transformation: | Transformation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,181: | Line 1,181: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,187: | Line 1,187: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 27 | July 27 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,213: | Line 1,213: | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LasR: Concentration: 95.8 ng/ | + | LasR: Concentration: 95.8 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | Term-Term: Concentration: 120.1 ng/ | + | Term-Term: Concentration: 120.1 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,225: | Line 1,225: | ||
Toggle switch test | Toggle switch test | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,240: | Line 1,240: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 28 | July 28 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,265: | Line 1,265: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 28 | July 28 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stock and plasmid isolation | Glycerol stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LacI: Concentration: 73.9 ng/ | + | LacI: Concentration: 73.9 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | LacI (2): Concentration: 109.8 ng/ | + | LacI (2): Concentration: 109.8 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page22" class='notebook_page'> | <div id="page22" class='notebook_page'> | ||
Line 1,294: | Line 1,294: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 29 | July 29 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stocks | Glycerol Stocks | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/ | + | pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/ | + | pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | RBS-CFP: Concentration: 84.0 ng/ | + | RBS-CFP: Concentration: 84.0 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 30 | July 30 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/ | + | pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/ | + | pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | RBS-CFP: Concentration: 84.0 ng/ | + | RBS-CFP: Concentration: 84.0 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,341: | Line 1,341: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,350: | Line 1,350: | ||
</li> | </li> | ||
<li> | <li> | ||
- | RBS-CFP (X/P): Concentration: 10.4 ng/ | + | RBS-CFP (X/P): Concentration: 10.4 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | pLac-LuxR (S/P): Concentration: 21.0 ng/ | + | pLac-LuxR (S/P): Concentration: 21.0 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
Line 1,376: | Line 1,376: | ||
Ligation and transformation: | Ligation and transformation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,388: | Line 1,388: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 30 | July 30 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Experiment 7 | Experiment 7 | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | 150 ng/ | + | 150 ng/?l Tet |
</li> | </li> | ||
<li> | <li> | ||
- | 200 ng/ | + | 200 ng/?l Tet |
</li> | </li> | ||
<li> | <li> | ||
- | 300 ng/ | + | 300 ng/?l Tet |
</li> | </li> | ||
<li> | <li> | ||
Line 1,423: | Line 1,423: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,432: | Line 1,432: | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 31 | July 31 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LuxS: Concentration: 78.1 ng/ | + | LuxS: Concentration: 78.1 ng/µl |
</li> | </li> | ||
<li> | <li> | ||
- | pLuxR-LasI-RBS-RFP: Concentration: 48.7 ng/ | + | pLuxR-LasI-RBS-RFP: Concentration: 48.7 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
Line 1,456: | Line 1,456: | ||
Digestion: | Digestion: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,462: | Line 1,462: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,468: | Line 1,468: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Test Digestion: | Test Digestion: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,478: | Line 1,478: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,484: | Line 1,484: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Colonies: | Colonies: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,494: | Line 1,494: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,500: | Line 1,500: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page25" class='notebook_page'> | <div id="page25" class='notebook_page'> | ||
Line 1,508: | Line 1,508: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
July 31 | July 31 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation: | Plasmid Isolation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | GFP: 137.5 ng/ | + | GFP: 137.5 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
August 1, 2012: | August 1, 2012: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation: | Plasmid Isolation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLuxR-LasI-RBS-RFP: 61.2 ng/ | + | pLuxR-LasI-RBS-RFP: 61.2 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLasR-RBS-CFP: 49.2 ng/ | + | pLasR-RBS-CFP: 49.2 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion: | Digestion: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,555: | Line 1,555: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,561: | Line 1,561: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,567: | Line 1,567: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,573: | Line 1,573: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Gel Exraction: | Gel Exraction: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | GFP: 8.5 ng/ | + | GFP: 8.5 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LacI: 12.7 ng/ | + | LacI: 12.7 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
Line 1,596: | Line 1,596: | ||
Colony: | Colony: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,602: | Line 1,602: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Transformation: | Transformation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,612: | Line 1,612: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,618: | Line 1,618: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 1 | August 1 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation: | Ligation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,638: | Line 1,638: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,644: | Line 1,644: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,650: | Line 1,650: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Transformation: | Transformation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,660: | Line 1,660: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,666: | Line 1,666: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,672: | Line 1,672: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page27" class='notebook_page'> | <div id="page27" class='notebook_page'> | ||
Line 1,681: | Line 1,681: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 2, 2012: | August 2, 2012: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies: | Colonies: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,695: | Line 1,695: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,701: | Line 1,701: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation: | Plasmid Isolation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LuxS: Concentration – 40.5 ng/ | + | LuxS: Concentration – 40.5 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLasR-CFP: 95.8 ng/ | + | pLasR-CFP: 95.8 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Digestion: | Digestion: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,727: | Line 1,727: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,733: | Line 1,733: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,739: | Line 1,739: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,745: | Line 1,745: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Gel Extraction: | Gel Extraction: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LasI: Concentration – 4.1 ng/ | + | LasI: Concentration – 4.1 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | LasR: Concentration – 5.3 ng/ | + | LasR: Concentration – 5.3 ng/µl |
</li> | </li> | ||
Line 1,764: | Line 1,764: | ||
<div id="page28" class='notebook_page'> | <div id="page28" class='notebook_page'> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLasR-RBS-CFP – 13.4 ng/ | + | pLasR-RBS-CFP – 13.4 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Ligation: | Ligation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,780: | Line 1,780: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,786: | Line 1,786: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,792: | Line 1,792: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 2 | August 2 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies: | Colonies: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,812: | Line 1,812: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,818: | Line 1,818: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,824: | Line 1,824: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 3, 2012: | August 3, 2012: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stocks/Miniprep: | Glycerol Stocks/Miniprep: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pTet-GFP: Concentration-142.2 ng/ | + | pTet-GFP: Concentration-142.2 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pTet-LacI: Concentration-67.2 ng/ | + | pTet-LacI: Concentration-67.2 ng/µl |
</li> | </li> | ||
</div> | </div> | ||
Line 1,854: | Line 1,854: | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLac-GFP: Concentration-50.5 ng/ | + | pLac-GFP: Concentration-50.5 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Digestion: | Digestion: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,870: | Line 1,870: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,876: | Line 1,876: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,882: | Line 1,882: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,888: | Line 1,888: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 3 | August 3 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation: | Ligation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,907: | Line 1,907: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,913: | Line 1,913: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,919: | Line 1,919: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Ligation: | Ligation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,929: | Line 1,929: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,935: | Line 1,935: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,941: | Line 1,941: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page30" class='notebook_page'> | <div id="page30" class='notebook_page'> | ||
Line 1,948: | Line 1,948: | ||
Glycerol Stock: | Glycerol Stock: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pLuxR-LasI-RBS-RFP: Concentration – 45.1 ng/ | + | pLuxR-LasI-RBS-RFP: Concentration – 45.1 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
- | pTetR-LuxI: Concentration – 105.1 ng/ | + | pTetR-LuxI: Concentration – 105.1 ng/µl |
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Digestion: | Digestion: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,970: | Line 1,970: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Ligation: | Ligation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,986: | Line 1,986: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 1,995: | Line 1,995: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 4 | August 4 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,016: | Line 2,016: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
</div> | </div> | ||
Line 2,027: | Line 2,027: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 5 | August 5 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,050: | Line 2,050: | ||
Transformation (repeated) | Transformation (repeated) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,056: | Line 2,056: | ||
</li> | </li> | ||
<li> | <li> | ||
- | + | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 6 | August 6 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,080: | Line 2,080: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,090: | Line 2,090: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,109: | Line 2,109: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Digestion and gel extraction (improperly prepared for gel) | Digestion and gel extraction (improperly prepared for gel) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,125: | Line 2,125: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,141: | Line 2,141: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 6, 2012: | August 6, 2012: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
PCR: | PCR: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA created | RFP-LVA created | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Experiments: | Experiments: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Test mechanism shows TetR and LacI are medium strength repressors. | Test mechanism shows TetR and LacI are medium strength repressors. | ||
Line 2,171: | Line 2,171: | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
Toggle Experiment fails to show significant changes in fluorescence protein after 2 or 6 hours. | Toggle Experiment fails to show significant changes in fluorescence protein after 2 or 6 hours. | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 7 | August 7 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,197: | Line 2,197: | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,218: | Line 2,218: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,239: | Line 2,239: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,254: | Line 2,254: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,267: | Line 2,267: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 7, 2012 | August 7, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Miniprep | Glycerol Stock/Miniprep | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-GFP | pLac-GFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion & Gel Extraction | Digestion & Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI: XbaI and PstI | pTet-LacI: XbaI and PstI | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page35" class='notebook_page'> | <div id="page35" class='notebook_page'> | ||
Line 2,305: | Line 2,305: | ||
pLac-GFP: SpeI and PstI | pLac-GFP: SpeI and PstI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation/Transformation | Ligation/Transformation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Vector: pLac-GFP | Vector: pLac-GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Insert: pTet-LacI | Insert: pTet-LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 8 | August 8 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,347: | Line 2,347: | ||
Repeat transformations from ligation | Repeat transformations from ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,356: | Line 2,356: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 8, 2012 | August 8, 2012 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Transformations: | Transformations: | ||
Line 2,374: | Line 2,374: | ||
<div id="page36" class='notebook_page'> | <div id="page36" class='notebook_page'> | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Negative control had ~20 colonies | Negative control had ~20 colonies | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
2:1 sample had ~ 40 colonies, we picked 2 | 2:1 sample had ~ 40 colonies, we picked 2 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Positive had too many colonies to count | Positive had too many colonies to count | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
PCR Reaction (Gradient) | PCR Reaction (Gradient) | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
-55, 60, and 65 degrees | -55, 60, and 65 degrees | ||
Line 2,398: | Line 2,398: | ||
-55 degrees found to be most ideal | -55 degrees found to be most ideal | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Gel Extraction (of PCR) | Gel Extraction (of PCR) | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
Poor results, no DNA extracted | Poor results, no DNA extracted | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plate test for toggle switch: | Plate test for toggle switch: | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
1 tube inoculated with IPTG 10 microliters of .2mM solution | 1 tube inoculated with IPTG 10 microliters of .2mM solution | ||
Line 2,417: | Line 2,417: | ||
1 tube inoculated with ATC 10 microliters of 20ng/microliter | 1 tube inoculated with ATC 10 microliters of 20ng/microliter | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 9 | August 9 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stocks | Glycerol stocks | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,447: | Line 2,447: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,459: | Line 2,459: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,465: | Line 2,465: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,477: | Line 2,477: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,483: | Line 2,483: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,489: | Line 2,489: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,501: | Line 2,501: | ||
Gel Extraction | Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,507: | Line 2,507: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,516: | Line 2,516: | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,528: | Line 2,528: | ||
Innoculation: pLac-LuxR-pLuxR-LasI-RBS-RFP | Innoculation: pLac-LuxR-pLuxR-LasI-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 9, 2012 | August 9, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol stock/miniprep: | Glycerol stock/miniprep: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-GFP-ST-pTet-LacI | pLac-GFP-ST-pTet-LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
PCR Reaction | PCR Reaction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Experiment: Repressor Test Mechanism (LacI) | Experiment: Repressor Test Mechanism (LacI) | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 - Induced 10microliters of 10mM IPTG | 1 - Induced 10microliters of 10mM IPTG | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 - No induction | 1 - No induction | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion and Gel Extraction: | Digestion and Gel Extraction: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA: XbaI and PstI | RFP-LVA: XbaI and PstI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ampicillin Backbone: SpeI and PstI | Ampicillin Backbone: SpeI and PstI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Line 2,590: | Line 2,590: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 10 | August 10 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,607: | Line 2,607: | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,616: | Line 2,616: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,625: | Line 2,625: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,643: | Line 2,643: | ||
Transformation: | Transformation: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,655: | Line 2,655: | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 10, 2012 | August 10, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation/Transformation | Ligation/Transformation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA into Ampicillin backbone | RFP-LVA into Ampicillin backbone | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations: | Inoculations: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle | Toggle | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas | pLas | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI | LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR | LuxR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet | pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLux | pLux | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxI | LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
August 11, 2012 | August 11, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid isolation | Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle | Toggle | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas | pLas | ||
Line 2,724: | Line 2,724: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI | LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR | LuxR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet | pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLux | pLux | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxI | LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR: X and P | LuxR: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLux: S and P | pLux: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxI: S and P | LuxI: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasR: X and P | LasR: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Double Terminators (DT): X and P | Double Terminators (DT): X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI: X and P | LasI: X and P | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 11 | August 11 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,797: | Line 2,797: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
Line 2,804: | Line 2,804: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 12 | August 12 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid isolation | Glycerol Stock and Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,824: | Line 2,824: | ||
Transformation repeat | Transformation repeat | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,833: | Line 2,833: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,845: | Line 2,845: | ||
Gel Extraction | Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,857: | Line 2,857: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,876: | Line 2,876: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 13 | August 13 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,897: | Line 2,897: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 13, 2012 | August 13, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Miniprep/Glycerol Stock | Miniprep/Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestions/Extraction | Digestions/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas: S and P | pLas: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI: X and P | LacI: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA: E and P | RFP-LVA: E and P | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
Line 2,939: | Line 2,939: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone | Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
DT | DT | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 14 | August 14 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid isolation | Glycerol Stock and Plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,976: | Line 2,976: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 2,985: | Line 2,985: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Parts Recieved | Parts Recieved | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,010: | Line 3,010: | ||
Streaking | Streaking | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,019: | Line 3,019: | ||
Ligation repeat | Ligation repeat | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,034: | Line 3,034: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 14, 2012 | August 14, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Miniprep/Glycerol Stock | Miniprep/Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone | Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
DT | DT | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction: | Digestion/Extraction: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
DT: X and P | DT: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone: E and P | Chlorabackbone: E and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle: E and P | Toggle: E and P | ||
Line 3,075: | Line 3,075: | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation/Transformation: | Ligation/Transformation: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
DT into LuxR | DT into LuxR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
TetR into pLux | TetR into pLux | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI into pTet | LasI into pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasR into DT | LasR into DT | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas into LacI | pLas into LacI | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pLac into LuxI | pLac into LuxI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 15 | August 15 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,125: | Line 3,125: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,137: | Line 3,137: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,150: | Line 3,150: | ||
Testing | Testing | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,184: | Line 3,184: | ||
Streaking | Streaking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
BBa_K091109 | BBa_K091109 | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,197: | Line 3,197: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 15, 2012 | August 15, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page47" class='notebook_page'> | <div id="page47" class='notebook_page'> | ||
Line 3,215: | Line 3,215: | ||
LuxR-DT: 15 colonies, picked 1 colony | LuxR-DT: 15 colonies, picked 1 colony | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLux-TetR: 35 colonies, picked 1 | pLux-TetR: 35 colonies, picked 1 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasI: Negative control growth; unsuccessful | pTet-LasI: Negative control growth; unsuccessful | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasR-DT: 25 colonies, picked 1 | LasR-DT: 25 colonies, picked 1 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI: 0 growth | pLas-LacI: 0 growth | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxI: 15 colonies, picked 1 | pLac-LuxI: 15 colonies, picked 1 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI into pTet | LasI into pTet | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasI | pTet-LasI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI | pLas-LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone | Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 16 | August 16 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies | Colonies | ||
Line 3,282: | Line 3,282: | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,291: | Line 3,291: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,309: | Line 3,309: | ||
Glycerol Stock and plasmid isolation | Glycerol Stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,324: | Line 3,324: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,345: | Line 3,345: | ||
Testing | Testing | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,414: | Line 3,414: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,435: | Line 3,435: | ||
Gel Extraction | Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,447: | Line 3,447: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,453: | Line 3,453: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
Line 3,460: | Line 3,460: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 16, 2012 | August 16, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Miniprep/Glycerol Stock | Miniprep/Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT | LuxR-DT | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLux-TetR | pLux-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasR-DT | LasR-DT | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacI | pLac-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone | Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Transformation Results | Transformation Results | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Negative controls had too much growth; results thrown out | Negative controls had too much growth; results thrown out | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT: S and P | LuxR-DT: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLux-TetR: X and P | pLux-TetR: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone: E and P | Chlorabackbone: E and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligations/Transformation | Ligations/Transformation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT and pLux-TetR | LuxR-DT and pLux-TetR | ||
Line 3,524: | Line 3,524: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone with Toggle Switch | Chlorabackbone with Toggle Switch | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 17 | August 17 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,556: | Line 3,556: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,574: | Line 3,574: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,595: | Line 3,595: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,631: | Line 3,631: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,646: | Line 3,646: | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 17, 2012 | August 17, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas with LacI | pLas with LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet with LasI | pTet with LasI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas | pLas | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI | LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet | pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac | pLac | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
GFP | GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI | LasI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Bba_K081014 Kit Plate 3 Well 12O Resistance AK; RFP | Bba_K081014 Kit Plate 3 Well 12O Resistance AK; RFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page55" class='notebook_page'> | <div id="page55" class='notebook_page'> | ||
Line 3,718: | Line 3,718: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 18 | August 18 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Innoculations | Innoculations | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,741: | Line 3,741: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 18, 2012 | August 18, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colony Picking | Colony Picking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT-pLux-TetR: 30 colonies, 1 picked | LuxR-DT-pLux-TetR: 30 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle Switch in Chlorabackbone: 4 colonies, 1 picked | Toggle Switch in Chlorabackbone: 4 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas with LacI: negative control growth; results thrown out | pLas with LacI: negative control growth; results thrown out | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet with LasI: negative control growth; results thrown out | pTet with LasI: negative control growth; results thrown out | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
RFP: 20 colonies, 1 picked | RFP: 20 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page56" class='notebook_page'> | <div id="page56" class='notebook_page'> | ||
Line 3,784: | Line 3,784: | ||
LuxR-DT-pLux-TetR | LuxR-DT-pLux-TetR | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Minipreps | Minipreps | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT-pLux-TetR | LuxR-DT-pLux-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas | pLas | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI | LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet | pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac | pLac | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
GFP | GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI | LasI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page57" class='notebook_page'> | <div id="page57" class='notebook_page'> | ||
Line 3,829: | Line 3,829: | ||
August 19 | August 19 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stocks | Glycerol Stocks | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,863: | Line 3,863: | ||
Oscillator Population Tests (population with induction plasmid) | Oscillator Population Tests (population with induction plasmid) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,890: | Line 3,890: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,920: | Line 3,920: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 3,956: | Line 3,956: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,004: | Line 4,004: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 19, 2012 | August 19, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Plasmid Isolation | Glycerol Stock/Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP | RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle Switch in Chlorabackbone | Toggle Switch in Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculation | Inoculation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac: S and P | pLac: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT-pLux-TetR: X and P | LuxR-DT-pLux-TetR: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet: S and P | pTet: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI: X and P | LasI: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasR-DT: X and P | LasR-DT: X and P | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page61" class='notebook_page'> | <div id="page61" class='notebook_page'> | ||
Line 4,065: | Line 4,065: | ||
LacI: S and P | LacI: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP: X and P | RFP: X and P | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 20 | August 20 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,109: | Line 4,109: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,134: | Line 4,134: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 20, 2012 | August 20, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligations/Transformations | Ligations/Transformations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LuxR-DT-pLux-TetR into pLac | LuxR-DT-pLux-TetR into pLac | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasI into pTet | LasI into pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LasR-DT into pTet | LasR-DT into pTet | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP into LacI | RFP into LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 21 | August 21 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and plasmid isolation | Glycerol Stock and plasmid isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,206: | Line 4,206: | ||
Digestion and gel extraction | Digestion and gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,236: | Line 4,236: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,245: | Line 4,245: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,263: | Line 4,263: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 21, 2012 | August 21, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colony Pickings | Colony Pickings | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxR-DT-pLux-TetR: 24 colonies, 1 picked | pLac-LuxR-DT-pLux-TetR: 24 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasI: 30 colonies, 3 picked | pTet-LasI: 30 colonies, 3 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT: 100 colonies, 2 picked | pTet-LasR-DT: 100 colonies, 2 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP: 24 colonies, 2 picked | LacI-RFP: 24 colonies, 2 picked | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 22 | August 22 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Digestion (test) | Digestion (test) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,339: | Line 4,339: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,348: | Line 4,348: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,363: | Line 4,363: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,372: | Line 4,372: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,385: | Line 4,385: | ||
Population Testing Prep (pop2, pop3, pop2+pop3) | Population Testing Prep (pop2, pop3, pop2+pop3) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,408: | Line 4,408: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 22, 2012 | August 22, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Miniprep | Glycerol Stock/Miniprep | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxR-DT-pLux-TetR | pLac-LuxR-DT-pLux-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasI | pTet-LasI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT | pTet-LasR-DT | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP | LacI-RFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction: | Digestion/Extraction: | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxR-DT-pLux-TetR: S and P | pLac-LuxR-DT-pLux-TetR: S and P | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page67" class='notebook_page'> | <div id="page67" class='notebook_page'> | ||
Line 4,452: | Line 4,452: | ||
GFP: X and P | GFP: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP: S and P | LacI-RFP: S and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxI: X and P | pLac-LuxI: X and P | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Test Digestions | Test Digestions | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-LasI: E and P | pTet-LasI: E and P | ||
Line 4,471: | Line 4,471: | ||
pTet-LasR-DT: E and P | pTet-LasR-DT: E and P | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligations/Transformations | Ligations/Transformations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
GFP into pLac-LuxR-DT-pLux-TetR | GFP into pLac-LuxR-DT-pLux-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxI into LacI-RFP | pLac-LuxI into LacI-RFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-GFP | pTet-GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RBS-YFP | RBS-YFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
August 22 | August 22 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Digestion (test) | Digestion (test) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,545: | Line 4,545: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,554: | Line 4,554: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,569: | Line 4,569: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,578: | Line 4,578: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page69" class='notebook_page'> | <div id="page69" class='notebook_page'> | ||
Line 4,590: | Line 4,590: | ||
Population Testing Prep (pop2, pop3, pop2+pop3) | Population Testing Prep (pop2, pop3, pop2+pop3) | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,613: | Line 4,613: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 23, 2012 | August 23, 2012 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Colony Picking | Colony Picking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP-ST-pLac-LuxI; 40 colonies, 1 picked | LacI-RFP-ST-pLac-LuxI; 40 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP-ST-pLac-LuxI; 30 colonies, 1 picked | LacI-RFP-ST-pLac-LuxI; 30 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 23 | August 23 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
Line 4,667: | Line 4,667: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,676: | Line 4,676: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,691: | Line 4,691: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,700: | Line 4,700: | ||
Population Testing from 8/22 prep after 24 hours | Population Testing from 8/22 prep after 24 hours | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,706: | Line 4,706: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<ul> | <ul> | ||
Line 4,765: | Line 4,765: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,803: | Line 4,803: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,833: | Line 4,833: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,842: | Line 4,842: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 24, 2012 | August 24, 2012 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP-ST-pLac-LuxI | LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT | pTet-LasR-DT | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasI | pTet-LasI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP-ST-pLac-LuxI | LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas | pLas | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasI into pLac-LuxR-DT-pLux-TetR-GFP-ST | pTet-LasI into pLac-LuxR-DT-pLux-TetR-GFP-ST | ||
</p> | </p> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page74" class='notebook_page'> | <div id="page74" class='notebook_page'> | ||
Line 4,897: | Line 4,897: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
August 24 | August 24 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,914: | Line 4,914: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,926: | Line 4,926: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 4,938: | Line 4,938: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 25, 2012 | August 25, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Plasmid Isolation | Glycerol Stock/Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP-ST-pLac-LuxI | LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page75" class='notebook_page'> | <div id="page75" class='notebook_page'> | ||
Line 4,968: | Line 4,968: | ||
LacI-RFP-ST-pLac-LuxI | LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
LacI-RFP-ST-pLac-LuxI into pLas | LacI-RFP-ST-pLac-LuxI into pLas | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 25 | August 25 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,008: | Line 5,008: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,026: | Line 5,026: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page76" class='notebook_page'> | <div id="page76" class='notebook_page'> | ||
Line 5,048: | Line 5,048: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,072: | Line 5,072: | ||
Primer Dilution | Primer Dilution | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,087: | Line 5,087: | ||
Colony PCR | Colony PCR | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page77" class='notebook_page'> | <div id="page77" class='notebook_page'> | ||
Line 5,110: | Line 5,110: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,141: | Line 5,141: | ||
August 26, 2012 | August 26, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colony Picking | Colony Picking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked | pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculation | Inoculation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI-RFP-ST-pLac-LuxI | pLas-LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 26 | August 26 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies Picked | Colonies Picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,184: | Line 5,184: | ||
Population testing | Population testing | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,204: | Line 5,204: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 27, 2012 | August 27, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Plasmid Isolation | Glycerol Stock/Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI-RFP-ST-pLac-LuxI | pLas-LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
PCR | PCR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Add second LacO site to pLac | Add second LacO site to pLac | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI-RFP-ST-pLac-LuxI | pLas-LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 27 | August 27 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,269: | Line 5,269: | ||
Digestion and Gel extraction | Digestion and Gel extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,281: | Line 5,281: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,308: | Line 5,308: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,341: | Line 5,341: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 28, 2012 | August 28, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Primer Dilutions | Primer Dilutions | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 28 | August 28 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colony PCR | Colony PCR | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,375: | Line 5,375: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,387: | Line 5,387: | ||
Population Testing | Population Testing | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,393: | Line 5,393: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,419: | Line 5,419: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,442: | Line 5,442: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,451: | Line 5,451: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,471: | Line 5,471: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 29, 2012 | August 29, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLas-LacI-RFP-ST-pLac-LuxI into pTet-LasR-DT | pLas-LacI-RFP-ST-pLac-LuxI into pTet-LasR-DT | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 29 | August 29 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Population Test Prep | Population Test Prep | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,529: | Line 5,529: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 30 | August 30 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,560: | Line 5,560: | ||
Colony PCR | Colony PCR | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,566: | Line 5,566: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,578: | Line 5,578: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,584: | Line 5,584: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page85" class='notebook_page'> | <div id="page85" class='notebook_page'> | ||
Line 5,590: | Line 5,590: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 31, 2012 | August 31, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colony picking | Colony picking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked | pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
PCR Reaction | PCR Reaction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Add LacO binding site to pLac; 65.2 degrees found to be optimal temperature for elongation | Add LacO binding site to pLac; 65.2 degrees found to be optimal temperature for elongation | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO | pLac-LacO | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
August 31 | August 31 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid Isolation | Glycerol Stock and Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,645: | Line 5,645: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,659: | Line 5,659: | ||
Colony PCR | Colony PCR | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,665: | Line 5,665: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,677: | Line 5,677: | ||
Population Test Results | Population Test Results | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,702: | Line 5,702: | ||
</ul> | </ul> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 1, 2012 | September 1, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Plasmid Isolation | Glycerol Stock/Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | ||
Line 5,720: | Line 5,720: | ||
</div> | </div> | ||
<div id="page87" class='notebook_page'> | <div id="page87" class='notebook_page'> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Colony Picking | Colony Picking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO | pLac-LacO | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR | pLac-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR-RBS-RFP | pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-RBS-GFP-T | pTet-RBS-GFP-T | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 1 | September 1 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligations | Ligations | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,798: | Line 5,798: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,810: | Line 5,810: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,816: | Line 5,816: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page89" class='notebook_page'> | <div id="page89" class='notebook_page'> | ||
Line 5,823: | Line 5,823: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 2, 2012 | September 2, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Plasmid Isolation | Glycerol Stock/Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO | pLac-LacO | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 3, 2012 | September 3, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR | pLac-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR-RBS-RFP | pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-RBS-GFP-T | pTet-RBS-GFP-T | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pLac-TetR | pLac-TetR | ||
Line 5,876: | Line 5,876: | ||
pLac-TetR-RBS-RFP | pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-RBS-GFP-T | pTet-RBS-GFP-T | ||
</p> | </p> | ||
- | + | ||
</div> | </div> | ||
<div id="page90" class='notebook_page'> | <div id="page90" class='notebook_page'> | ||
Line 5,890: | Line 5,890: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 3 | September 3 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock | Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,910: | Line 5,910: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,925: | Line 5,925: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,940: | Line 5,940: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,964: | Line 5,964: | ||
Colony PCR for I3-98-2 and I4-1-2- | Colony PCR for I3-98-2 and I4-1-2- | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 5,977: | Line 5,977: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 4, 2012 | September 4, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI (Atc 10 microliters) | pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI (Atc 10 microliters) | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI (IPTG 10 microliters) | pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI (IPTG 10 microliters) | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 4 | September 4 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,021: | Line 6,021: | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,030: | Line 6,030: | ||
Colonies picked from I4-1-2 | Colonies picked from I4-1-2 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 5, 2012 | September 5, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI | pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI | ||
Line 6,051: | Line 6,051: | ||
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 with Atc | 1 with Atc | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 with IPTG | 1 with IPTG | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 with No induction | 1 with No induction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 5 | September 5 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid Isolation | Glycerol Stock and Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,101: | Line 6,101: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,125: | Line 6,125: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,134: | Line 6,134: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page94" class='notebook_page'> | <div id="page94" class='notebook_page'> | ||
Line 6,140: | Line 6,140: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 6, 2012 | September 6, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Sequencing | Sequencing | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI | pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO | pLac-LacO | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
RFP-LVA | RFP-LVA | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Inoculations | Inoculations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone | Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI | pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI | ||
Line 6,181: | Line 6,181: | ||
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 with Atc | 1 with Atc | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 with IPTG | 1 with IPTG | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
1 with No induction | 1 with No induction | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Chlorabackbone | Chlorabackbone | ||
</p> | </p> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page95" class='notebook_page'> | <div id="page95" class='notebook_page'> | ||
Line 6,209: | Line 6,209: | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 6 | September 6 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation and Glycerol Stock | Plasmid Isolation and Glycerol Stock | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,232: | Line 6,232: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,247: | Line 6,247: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,276: | Line 6,276: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 7, 2012 | September 7, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Inoculation | Inoculation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-RBS-GFP-T | pLac-RBS-GFP-T | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-RBS-GFP-T-pLac-TetR | pTet-RBS-GFP-T-pLac-TetR | ||
Line 6,359: | Line 6,359: | ||
RBS-GFP-ST | RBS-GFP-ST | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 7 | September 7 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Test Digestions | Test Digestions | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,388: | Line 6,388: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,394: | Line 6,394: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 8, 2012 | September 8, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Time-Lapse Experiment to observe toggle switch | Time-Lapse Experiment to observe toggle switch | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | ||
Line 6,417: | Line 6,417: | ||
pLac-RBS-GFP-T | pLac-RBS-GFP-T | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-RBS-GFP-T-pLac-TetR | pTet-RBS-GFP-T-pLac-TetR | ||
Line 6,477: | Line 6,477: | ||
GFP | GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligations | Ligations | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR into Chlora | pLac-TetR into Chlora | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-RBS-GFP-T into Chlora | pLac-RBS-GFP-T into Chlora | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-RBS-GFP-T into Chlora | pTet-RBS-GFP-T into Chlora | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI into Chlora | pTet-LacI into Chlora | ||
</p> | </p> | ||
- | + | ||
- | + | ] | |
</div> | </div> | ||
<div id="page100" class='notebook_page'> | <div id="page100" class='notebook_page'> | ||
Line 6,504: | Line 6,504: | ||
Digestion/Extraction | Digestion/Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
GFP | GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO | pLac-LacO | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP | ||
Line 6,519: | Line 6,519: | ||
pLac-RBS-GFP-T | pLac-RBS-GFP-T | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-RBS-GFP-T-pLac-TetR | pTet-RBS-GFP-T-pLac-TetR | ||
Line 6,567: | Line 6,567: | ||
pLac-LuxI | pLac-LuxI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 8 | September 8 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies Picked | Colonies Picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,591: | Line 6,591: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
</div> | </div> | ||
<div id="page102" class='notebook_page'> | <div id="page102" class='notebook_page'> | ||
Line 6,598: | Line 6,598: | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 9, 2012 | September 9, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colony Picking | Colony Picking | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR, 1 colony picked | pLac-TetR, 1 colony picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-RBS-GFP-T, 1 colony picked | pLac-RBS-GFP-T, 1 colony picked | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI, 1 colony picked | pTet-LacI, 1 colony picked | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO-GFP | pLac-LacO-GFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 9 | September 9 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid Isolation | Glycerol Stock and Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,654: | Line 6,654: | ||
Digestion and Gel Extraction | Digestion and Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,671: | Line 6,671: | ||
Ligations | Ligations | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,698: | Line 6,698: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 10, 2012 | September 10, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Miniprep | Glycerol Stock/Miniprep | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-TetR | pLac-TetR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-RBS-GFP-T | pLac-RBS-GFP-T | ||
Line 6,724: | Line 6,724: | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Gel Extraction | Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO-GFP | pLac-LacO-GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI into pLac-LacO-RBS-GFP-ST | pTet-LacI into pLac-LacO-RBS-GFP-ST | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-RBS-GFP-T-pTet-LacI into chlora backbone | pLac-RBS-GFP-T-pTet-LacI into chlora backbone | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate Projects | Triple Population and AND Gate Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 10 | September 10 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Colonies Picked | Colonies Picked | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,795: | Line 6,795: | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,804: | Line 6,804: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 11, 2012 | September 11, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
PCR | PCR | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO | pLac-LacO | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO x2 | pLac-LacO x2 | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 12, 2012 | September 12, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Digestion/Gel Extraction | Digestion/Gel Extraction | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI-pLac-LacO-RBS-GFP-ST | pTet-LacI-pLac-LacO-RBS-GFP-ST | ||
</p> | </p> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page106" class='notebook_page'> | <div id="page106" class='notebook_page'> | ||
Line 6,848: | Line 6,848: | ||
Experiments | Experiments | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle with 20 micro liters IPTG | Toggle with 20 micro liters IPTG | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Toggle with 40 micro liters ATc | Toggle with 40 micro liters ATc | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Strain 1 of dual population toggle with inducer strain | Strain 1 of dual population toggle with inducer strain | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Strain 2 of dual population toggle with inducer strain | Strain 2 of dual population toggle with inducer strain | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO-RBS-GFP-ST-pTet-LacI into chlora backbone | pLac-LacO-RBS-GFP-ST-pTet-LacI into chlora backbone | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Triple Population and AND Gate | Triple Population and AND Gate | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 13 | September 13 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid Isolation | Glycerol Stock and Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,925: | Line 6,925: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,949: | Line 6,949: | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 6,987: | Line 6,987: | ||
Ligations for Chlora | Ligations for Chlora | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 7,002: | Line 7,002: | ||
Transformation | Transformation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 7,020: | Line 7,020: | ||
Innoculation | Innoculation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 7,037: | Line 7,037: | ||
</li> | </li> | ||
</ul> | </ul> | ||
- | + | ||
<p> | <p> | ||
Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 14, 2012 | September 14, 2012 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Ligation | Ligation | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP into Chlora backbone | pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP into Chlora backbone | ||
Line 7,056: | Line 7,056: | ||
pLac-RBS-GFP-T into Chlora backbone | pLac-RBS-GFP-T into Chlora backbone | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pTet-RBS-GFP-T-pLac-TetR into Chlora backbone | pTet-RBS-GFP-T-pLac-TetR into Chlora backbone | ||
Line 7,108: | Line 7,108: | ||
pLac-LacO x2-RBS-GFP-ST-pTet-LacI | pLac-LacO x2-RBS-GFP-ST-pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock/Plasmid Isolation | Glycerol Stock/Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO-GFP | pLac-LacO-GFP | ||
</p> | </p> | ||
- | + | ||
- | + | ||
<p> | <p> | ||
Digestion | Digestion | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-LacO-GFP | pLac-LacO-GFP | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pTet-LacI | pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p dir="ltr"> | <p dir="ltr"> | ||
pLac-LacO x2-RBS-GFP-ST-pTet-LacI | pLac-LacO x2-RBS-GFP-ST-pTet-LacI | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Inoculation | Inoculation | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
pLac-GFP-pTet-LacI | pLac-GFP-pTet-LacI | ||
</p> | </p> | ||
- | + | ||
- | + | ||
</div> | </div> | ||
<div id="page111" class='notebook_page'> | <div id="page111" class='notebook_page'> | ||
Line 7,148: | Line 7,148: | ||
Triple Population and AND Gate | Triple Population and AND Gate | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
September 15 | September 15 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Plasmid Isolation | Plasmid Isolation | ||
</p> | </p> | ||
- | + | ||
<ul> | <ul> | ||
<li> | <li> | ||
Line 7,180: | Line 7,180: | ||
Colonies picked | Colonies picked | ||
</p> | </p> | ||
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September 18 | September 18 | ||
</p> | </p> | ||
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<p> | <p> | ||
Glycerol Stock and Plasmid Isolation | Glycerol Stock and Plasmid Isolation | ||
</p> | </p> | ||
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Digestion and Gel Extraction | Digestion and Gel Extraction | ||
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Ligation | Ligation | ||
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Innoculation | Innoculation | ||
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Testing AND Gate | Testing AND Gate | ||
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Triple Population and AND Gate | Triple Population and AND Gate | ||
</p> | </p> | ||
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<p> | <p> | ||
September 19 | September 19 | ||
</p> | </p> | ||
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<p> | <p> | ||
Plate Experiments for AND Gate | Plate Experiments for AND Gate | ||
</p> | </p> | ||
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September 20 | September 20 | ||
</p> | </p> | ||
- | + | ||
<p> | <p> | ||
Glycerol Stock and Plasmid Isolation | Glycerol Stock and Plasmid Isolation | ||
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Digestions (repeated 3X) | Digestions (repeated 3X) | ||
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September 22 | September 22 | ||
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Ligations (Repeated) | Ligations (Repeated) | ||
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Single and Double Population Projects | Single and Double Population Projects | ||
</p> | </p> | ||
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<p> | <p> | ||
September 22, 2012 | September 22, 2012 | ||
</p> | </p> | ||
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<p> | <p> | ||
Single toggle experiment - No induction at start, check every 6 hours, induce with IPTG after first 6 hours, and induce with ATc in new tube after 12 Hours | Single toggle experiment - No induction at start, check every 6 hours, induce with IPTG after first 6 hours, and induce with ATc in new tube after 12 Hours | ||
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Ligations (Repeated) | Ligations (Repeated) | ||
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Digestions | Digestions | ||
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Plasmid Isolation | Plasmid Isolation | ||
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Latest revision as of 01:28, 4 October 2012
June 6
Single and Double Population Projects
Transformation
- BBa_J61002: “RFP” promoter
- BBa_K081012: GFP protein generator (RBS-GFP)
- BBa_J23103: constitutive family member
- Bba_J04450: RFP Coding Device (pLas-RBS-RFP-Term)
Single and Double Population Projects
June 7
Colonies picked and glycerol stocked made
- RFP promoter: 5 colonies seen: 1 colony picked
- RBS-GFP: 2 colonies seen: 1 colony picked
- constitutive family promoter: 2 colonies seen: 1 colony picked
- pLas-RBS-RFP-Term: 6 colonies seen: 1 colony picked
Single and Double Population Projects
June 8
Plasmid isolation
- RBS-GFP
- Concentration:111.2 ng/ul
- constututive family member
- Concentration: 109.8 ng/ul
- pLasI-RBS-RFP-Term
- Concentration: 113.9 ng/ul
Single and Double Population Projects
June 11
Digestion
- RBS-GFP (E/S)---(wrong enzymes used)
- constitutive promoter (E/X)---(wrong enzymes used)
- constitutive promoter (S/P)
- pLasI-RBS-RFP-Term (X/P)
Single and Double Population Projects
June 12
Digestion
- RBS-GFP (X/P)
Ligation
- Vector: constitutive promoter
- Insert: RBS-GFP
- 0:1--- 0 colonies counted
- 2:1--- 7 colonies counted
June 13
Incubate constitutive promoter-RBS-GFP in LB carb broth overnight @ 37*C and 220 rpm
- 2:1--- 2 colonies picked
Single and Double Population Projects
June 14
Glycerol stock and miniprep
- constitutive promoter-RBS-GFP
- colony 1 picked: 91 ng/ul
- colony 2 picked: 97 ng/ul
Test Digestion for each plasmid: correct results received
Single and Double Population Projects
June 15
Plasmid isolation
- prom-RBS-GFP: Concentration: 127 ng/µl
Single and Double Population Projects
July 16
Transformations
- Bba_I763035 pTetR-RBS-LacI-RBS-GFP-Term-Term
- Bba_K093005 RBS-RFP
- Bba_R0010 pLacI
- Bba_C0040 TetR
Single and Double Population Projects
July 17
- Bba_I763035 pTetR-RBS-LacI-RBS-GFP-Term-Term
- 2 colonies picked
- Bba_K093005 RBS-RFP
- 2 colonies picked
- Bba_R0010 pLacI
- 2 colonies picked
- Bba_C0040 TetR
- 2 colonies picked
Single and Double Population Projects
July 18
Glycerol stocks made
- pTetR-RBS-LacI-RBS-GFP-Term-Term
- Concentration: 236.2 ng/µl
- RBS-RFP
- Concentration: 92.9 ng/µl
- pLacI
- Concentration: 60.6 ng/µl
- TetR
- Concentration: 110.9 ng/µl
Digestion
- pTetR-RBS-LacI-RBS-GFP-Term-Term (E/P)
- RBS-RFP (X/P)
- pLacI (S/P)
- TetR (X/P)
Gel Extraction
- RBS-RFP
- Concentration: 10.8 ng/µl
- pLac
- Concentration: 19.6 ng/µl
- TetR
- Concentration: 6.2 ng/µl
Ligation
- Vector: pLac
- Insert: TetR
Transformation
- pLac-TetR
- 0:1, 0 colonies seen
- 2:1, 20 colonies seen, 1 picked
- 4:1, 20 colonies seen, 1 picked
July 19
Triple Population and AND Gate Projects
Transformations
- BBa_I721001: lead promoter
- BBa_K091109: LuxS
- BBa_C0078: LasI
- BBa_C0062: LuxR
- BBa_C0061: LuxI
- BBa_E0432: RBS-YFP
July 20
Triple Population and AND Gate Projects
Colonies picked
- LuxS: 20 colonies seen: 1 colony picked
- LuxR: 5 colonies seen: 1 colony picked
- LuxI: 5 colonies seen: 1 colony picked
- RBS-YFP: no colonies seen
July 20
Single and Double Population Projects
Glycerol stocks & plasmid isolation
- pLas-TetR: Concentrations: (2:1) 67.4 and (4:1) 68.0
Digestion
- (2:1) pLac-TetR
Gel Extraction
- pLac-TetR: Concentration: 20.5 ng/µl
Ligation
- Vector: pLac-TetR
- Insert: RBS-YFP
Transformation
- pLac-TetR-RBS-YFP
- (0:1) no colonies seen
Single and Double Population Projects
Triple Population and AND Gate Projects
July 20
Repeat Transformation
- lead promoter
- LasI
- RBS-YFP
Triple Population and AND Gate Projects
July 21
Glycerol Stock
- LuxS
- LuxR
- LuxI
Colonies picked
- RBS-YFP: 1 colony picked
Digestion & Gel Extraction
- LuxS (wrong enzymes used)
- LuxR: Concentration: 11.1 ng/µl
- LuxI: Concentration: 7.1 ng/µl
Triple Population and AND Gate Projects
July 22
Plasmid Isolation
- LuxS: Concentration: 75.2 ng/µl
- LasI: Concentration: 90.1 ng/µl
- RBS-YFP: Concentration: 76.4 ng/µl
Triple Population and AND Gate Projects
July 23
DIgestion and gel extraction
- LuxS (X/P) Concentration: not right size to be repeated
- LasI (E/S) Concentration: 20.3 ng/µl
- RBS-YFP (X/P) Concentration: 18.2 ng/µl
- (wrong enzymes used in digestions - plasmid isolation repeated)
Ligation
- Vector: pLac
- Insert: LuxR
Transformation
- BBa_ K117002: pLsrA
Colonies picked
- pLac-LuxR: 15 colonies seen: 1 colony picked
- pLsrA: 20 colonies seen: colony picked
- pLuxR: 3 colonies seen: 1 colony picked
July 23
Glycerol stock and plasmid isolation
- pLac-TetR-RBS-YFP: Concetration: 138.4
Digestion
- pLac-TetR-RBS-YFP (X/P)
- pTetR-LacI-RBS-GFP (S/P)
Ligation
- Vector: pTetR-LacI-RBS-GFP
- Insert: pLac-TetR-RBS-YFP
- 2 colonies picked after plating and incubation
Triple Population and AND Gate Projects
July 24
Plasmid Isolation
- LuxS: Concentration: 85.9 ng/µl
- LuxI: Concentration:85.7 ng/µl
- LasI: Concentration: 224.1 ng/µl
Digestion and gel extraction
- LuxI (S/P): Concentration: 25.5 ng/µl
- LasI (S/P): Concentration: 30.7 ng/µl
Ligation
- Vector 1: LuxI
- Insert 1: RBS-YFP
- Vector 2: LasI
- Insert 2: RBS-RFP
Triple Population and AND Gate Projects
July 24
Transformation
- BBa_C0079: LasR
- BBa_B0015: Term-Term
- BBa_I14016: pLac
- BBa_C0012: LacI
Triple Population and AND Gate Projects
July 25
Colonies picked
- LuxI-RBS-YFP: 100 colonies seen: 1 picked
- LasI-RBS-RFP: 50 colonies seen: 1 picked
Plasmid Isolation
- pLac-LuxR: Concentration: 107.5
- pLsrA: Concentration: 44.3
- pLuxR: Concentration: 35.9
Digestion and gel extraction
- pLsrA (S/P): Concentration: 20.6 ng/µl
Transformation
- BBa_R0040: pTetR
- BBa_R0079: pLasR
- BBa_K17036: RBS-CFP
Single and Double Population Projects
July 25
Glycerol Stock and plasmid isolation
- pTetR-LacI-RBS-GFP-pLac-TetR-RBS-YFP (full toggle switch) from both colines picked
- Concentration 1: 194.8 ng/µl
- Concentartion 2: 117.2 ng/µl
Transformation
- BBa_C0079: LasR
- BBa_I14016: pLas
- BBa_C0012: LacI
Tetracycle Stock: 50 ng/?l
IPTG stock: 50 ng/?l
Triple Population and AND Gate Projects
July 26
Colonies picked
- pTetR: 10 colonies seen: 1 colony picked
- pLasR: 10 colonies seen: 1 colony picked
- RBS-CFP: no colonies seen
Glycerol stock and plasmid isolation
- LuxI-RBS-YFP: Concentration: 70.8 ng/µl
- LasI-RBS-RFP: Concentration: 4.0 (to be repeated) ng/µl
Digestion and gel extraction
- LuxI-RBS-YFP (X/P): Concentration: 2.8 (to be repeated)
Single and Double Population Projects
July 26
Transformation
- BBa_C0012: LacI
Triple Population and AND Gate Projects
July 27
Glycerol stock and plasmid isolation
- pTetR: Concentration: 42.4 ng/µl
- pLasR: Concentration: 62.2 ng/µl
- LuxI-RBS-YFP: Concentration: 120.9 ng/µl
- LasI-RBS-RFP: Concentration: 85 ng/µl
Digestion and gel extraction
- pTetR (S/P): Concentration: 17.4 ng/µl
- pLasR (S/P): Concentration: 23.8 ng/µl
- LuxI-RBS-YFP (X/P): Concentration: 13.8 ng/µl
- LasI-RBS-RFP (X/P): Concentration: 8.9 ng/µl
Ligation
- Vector 1: pLsrA
- Insert 1:LuxI-RBS-YFP
Transformation:
- pLsrA-LuxI-RBS-YFP
- pLuxR-LasI-RBS-RFP
- BBa_B0422: RBS-CFP
Single and Double Population Projects
July 27
Colonies picked
- LacI: 8 colonies seen: 1 colony picked
- LacI (2): 2 colonies seen: 1 colony picked
Plasmid isolation
- LasR: Concentration: 95.8 ng/µl
- Term-Term: Concentration: 120.1 ng/µl
Toggle switch test
- IPTG innoculation
Triple Population and AND Gate Projects
July 28
Colonies picked
- pLsrA-LuxI-RBS-YFP: 20 colonies seen: 1 colony picked
- pLuxR-LasI-RBS-RFP: 2 colonies seen: 1 colony picked
- RBS-CFP: 10 colonies seen: 1 colony picked
Single and Double Population Projects
July 28
Glycerol stock and plasmid isolation
- LacI: Concentration: 73.9 ng/µl
- LacI (2): Concentration: 109.8 ng/µl
Triple Population and AND Gate Projects
July 29
Glycerol Stocks
- pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl
- pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl
- RBS-CFP: Concentration: 84.0 ng/µl
Triple Population and AND Gate Projects
July 30
Plasmid Isolation
- pLsrA-LuxI-RBS-YFP: Concentration: 201.6 ng/µl
- pLuxR-LasI-RBS-RFP: Concentration: 127.1 ng/µl
- RBS-CFP: Concentration: 84.0 ng/µl
Digestion and gel extraction
- LuxS (X/P): Gel extraction failed
- pLuxR-LasI-RBS-RFP (X/P): Gel extraction failed
- RBS-CFP (X/P): Concentration: 10.4 ng/µl
- pLac-LuxR (S/P): Concentration: 21.0 ng/µl
Innoculation
- pLuxR-LasI-RBS-RFP
- LuxS
Ligation and transformation:
- Vector: pLasR
- Insert: RBS-CFP
- 2 colonies shown: 1 colony picked
Single and Double Population Projects
July 30
Experiment 7
- 150 ng/?l Tet
- 200 ng/?l Tet
- 300 ng/?l Tet
- 1mM IPTG
- No Induction
Innoculation
- RBS-GFP
Triple Population and AND Gate Projects
July 31
Plasmid isolation
- LuxS: Concentration: 78.1 ng/µl
- pLuxR-LasI-RBS-RFP: Concentration: 48.7 ng/µl
Digestion:
- LuxS: (X/P); 516 bp
- pLuxR+LasI-RBS-RFP: Digested at XbaI and PstI; 1421 bp
Test Digestion:
- LuxS: digested at EcoRI and PstI
- pLuxR-lasI-RBS-RFP: digested at EcoRI and PstI
Colonies:
- pLuxR-lasI-RBS-RFP: 1 additional colony picked
- LuxS: 1 additional colony picked
Single and Double Population Projects
July 31
Plasmid Isolation:
- GFP: 137.5 ng/µl
August 1, 2012:
Plasmid Isolation:
- pLuxR-LasI-RBS-RFP: 61.2 ng/µl
- pLasR-RBS-CFP: 49.2 ng/µl
Digestion:
- GFP: Digested XbaI and PstI
- LacI: Digested XbaI and PstI
- pLuxR-LasI-RBS-RFP: Digested XbaI and PstI
- pLusR-RBS-CFP: Digested XbaI and PstI
Gel Exraction:
- GFP: 8.5 ng/µl
- LacI: 12.7 ng/µl
Colony:
- pLasR-RBS-CFP: 1 additional colony picked
Transformation:
- pLuxR-lasI-RBS-RFP
- BBa_J2309: pTetR-luxI
Single and Double Population Projects
August 1
Ligation:
- Vector: pTet; Insert: GFP
- Vector: pTet; Insert: LacI
- Vector: pLac; Insert: GFP
Transformation:
- pTet-GFP
- pTet-LacI
- pLac-GFP
Triple Population and AND Gate Projects
August 2, 2012:
Colonies:
- pLuxR-LasI-RBS-RFP: about 5 colonies; 1 picked
- pTetR-LuxI: about 2 colonies; 1 picked
Plasmid Isolation:
- LuxS: Concentration – 40.5 ng/µl
- pLasR-CFP: 95.8 ng/µl
Digestion:
- LasI: Digested at XbaI and PstI
- LasR: Digested at XbaI and PstI
- LuxS: Digested at XbaI and PstI
- pLasR-RBS-CFP: Digested at XbaI and PstI
Gel Extraction:
- LasI: Concentration – 4.1 ng/µl
- LasR: Concentration – 5.3 ng/µl
- pLasR-RBS-CFP – 13.4 ng/µl
Ligation:
- Vector: pLac
- Insert: LasI
- Transformation 2:1 – 3 colonies; 1 picked
Single and Double Population Projects
August 2
Colonies:
- pTet-GFP: 7 colonies; 1 picked
- pTet-LacI: 20 colonies; 1 picked
- pLac-GFP: 20 colonies; 1 picked
Single and Double Population Projects
August 3, 2012:
Glycerol Stocks/Miniprep:
- pTet-GFP: Concentration-142.2 ng/µl
- pTet-LacI: Concentration-67.2 ng/µl
- pLac-GFP: Concentration-50.5 ng/µl
Digestion:
- pTet-GFP: Digested at SpeI and PstI
- pTet-LacI: Digested at SpeI and PstI
- pLac-GFP: Digested at XbaI and PstI
- pLac-TetR: Digested at XbaI and PstI
Triple Population and AND Gate Projects
August 3
Ligation:
- Vector: pTetR
- Insert: LasR
- Transformation 2:1 – 1 colony; 1 picked
Ligation:
- Vector: pLasR
- Insert: RBS-CFP
- Transformation: 2:1
Glycerol Stock:
- pLuxR-LasI-RBS-RFP: Concentration – 45.1 ng/µl
- pTetR-LuxI: Concentration – 105.1 ng/µl
Digestion:
- pLuxR-LasI-RBS-RFP: Digested at XbaI and PstI
Ligation:
- Vector: pLac-luxR
- Insert: pLuxR-LasI-RBS-RFP
Transformation
- BBa_K091109 (2010) LuxS
- BBa_K091109 (2011) LuxS
Triple Population and AND Gate Projects
August 4
Colonies picked
- BBa_K091109 (2010) LuxS: 70 colonies seen: 1 picked
- BBa_K091109 (2011) LuxS: 100 colonies seen: 1 picked
Triple Population and AND Gate Projects
August 5
Glycerol Stock
- LuxS
- LuxS
- pTetR-RBS-CFP
Transformation (repeated)
- pLasR-RBS-CFP
Triple Population and AND Gate Projects
August 6
Colonies picked
- pLasR-RBS-CFP: 10 colonies seen: 1 colony picked
Innoculation
- pTetR-LuxI
Plasmid isolation
- LuxS: Concentration: 57.6
Digestion and gel extraction (improperly prepared for gel)
- LuxS: Concentration: N/A
- LuxS: Concentration: N/A
- pTetR-RBS-CFP: Concentration: 21.9
Innoculation
- LuxS
- LuxS
- pTetR-RBS-CFP
Single and Double Population Projects
August 6, 2012:
PCR:
RFP-LVA created
Experiments:
Test mechanism shows TetR and LacI are medium strength repressors.
Toggle Experiment fails to show significant changes in fluorescence protein after 2 or 6 hours.
Triple Population and AND Gate Projects
August 7
Glycerol Stock
- pLasR-RBS-CFP
Plasmid isolation
- LuxS: Concentration: 120.3
- LuxS: Concentration:101.7
- pTetR-LasR: Concentration: 65.3
- pLasR-RBS-CFP: Concentration: 77.1
- pLac-luxR-pLuxR-LasI-RBS-RFP: Concentration: 103.6
Digestion and gel extraction
- LuxS (X/P): Concentration: 1.5
- LuxS (X/P): Concentration: 1.1
- pTetR-LasR (S/P): Concentration: 20.4
Ligation
- Vector 1: pTetR-lasR
- Insert 1: pLasR-RBS-CFP
- Vector 2: pyear
- Insert 2: LuxS
Transformation
- pSBIC3 chlora backbone
- pLac-luxR-pLuxR-LasI-RBS-RFP
Single and Double Population Projects
August 7, 2012
Glycerol Stock/Miniprep
pTet-LacI
pLac-GFP
Digestion & Gel Extraction
pTet-LacI: XbaI and PstI
pLac-GFP: SpeI and PstI
Ligation/Transformation
Vector: pLac-GFP
Insert: pTet-LacI
Triple Population and AND Gate Projects
August 8
Colonies picked
- chlora bb: 100 colonies seen: 1 picked
- pLac-luxR-pLuxR-LasI-RBS-RFP: 300 colonies seen: 1 picked
- pTetR-lasR-pLasR-RBS-CFP: 1 colony seen: 1 picked
Repeat transformations from ligation
- pyear-LuxS
- pTetR-lasR-pLasR-RBS-CFP
Single and Double Population Projects
August 8, 2012
Transformations:
Negative control had ~20 colonies
2:1 sample had ~ 40 colonies, we picked 2
Positive had too many colonies to count
PCR Reaction (Gradient)
-55, 60, and 65 degrees
-55 degrees found to be most ideal
Gel Extraction (of PCR)
Poor results, no DNA extracted
Plate test for toggle switch:
1 tube inoculated with IPTG 10 microliters of .2mM solution
1 tube inoculated with ATC 10 microliters of 20ng/microliter
Triple Population and AND Gate Projects
August 9
Glycerol stocks
- chlora backbone
- pLac-LuxR-pLuxR-LasI-RBS-RFP
Innoculation
- pLac-Las-I
- pTetR-LuxI
Plasmid Isolation
- chlora backbone
- pLac-LuxR-pLuxR-LasI-RBS-RFP
- pTetR-LasR-pLasR-RBS-CFP
Digestion
- Term-Term (S/P)
- chlora backbone (E/P)
- pLac-LuxR-pLuxR-LasI-RBS-RFP (E/P)
- pTetR-LasR-pLasR-RBS-CFP (E/P)
Gel Extraction
- Term-Term: Concentration: 44.3
- chlora backbone: Concentration: 332.9
- pLac-LuxR-pLuxR-LasI-RBS-RFP: bad results
- pTetR-LasR-pLasR-RBS-CFP: bad results
Innoculation: pLac-LuxR-pLuxR-LasI-RBS-RFP
Single and Double Population Projects
August 9, 2012
Glycerol stock/miniprep:
pLac-GFP-ST-pTet-LacI
PCR Reaction
RFP-LVA
Experiment: Repressor Test Mechanism (LacI)
1 - Induced 10microliters of 10mM IPTG
1 - No induction
Digestion and Gel Extraction:
RFP-LVA: XbaI and PstI
Ampicillin Backbone: SpeI and PstI
August 10
Glycerol Stock
- pLac-LuxR-pLuxR-LasI-RBS-RFP
Plasmid isolation
- pLac-LuxR-pLuxR-LasI-RBS-RFP: Concentration: 125.1
Digestion
- pLac-LuxR-pLuxR-LasI-RBS-RFP (E/P)
Ligation
- Vector1: Term-Term
- Insert1: pLasR-RBS-CFP
- Vector2: Term-Term
- Insert2: pLuxR-LasI-RBS-RFP
Transformation:
- Term-Term-pLasR-RBS-CFP
- Term-Term-pLuxR-LasI-RBS-RFP
Single and Double Population Projects
August 10, 2012
Ligation/Transformation
RFP-LVA into Ampicillin backbone
Inoculations:
Toggle
pLas
LacI
LuxR
pTet
pLux
LuxI
August 11, 2012
Plasmid isolation
Toggle
pLas
LacI
LuxR
pTet
pLux
LuxI
Digestion/Extraction
LuxR: X and P
pLux: S and P
LuxI: S and P
LasR: X and P
Double Terminators (DT): X and P
LasI: X and P
Triple Population and AND Gate Projects
August 11
Colonies picked
- Term-Term-pLasR-RBS-CFP: 200 colonies seen: 1 picked
- Term-Term-pLuxR-LasI-RBS-RFP: 100 colonies seen: 1 picked
Triple Population and AND Gate Projects
August 12
Glycerol Stock and Plasmid isolation
- Term-Term-pLasR-RBS-CFP: Concentration: 219.1
- Term-Term-pLuxR-LasI-RBS-RFP: Concentration: 107.5
Transformation repeat
- pyear-LuxS
Digestion
- Term-Term-pLasR-RBS-CFP (X/P)
- Term-Term-pLuxR-LasI-RBS-RFP (X/P)
Gel Extraction
- Term-Term-pLasR-RBS-CFP: Concentration: 10.2
- Term-Term-pLuxR-LasI-RBS-RFP: Concentration: 15.0
Ligation
- Vector1: pTetR-LasR
- Insert1: Term-Term-pLasR-RBS-CFP
Triple Population and AND Gate Projects
August 13
Innoculation
- pLac-LasI
- pTetR-LuxI
Single and Double Population Projects
August 13, 2012
Miniprep/Glycerol Stock
RFP-LVA
Digestions/Extraction
pLas: S and P
LacI: X and P
RFP-LVA: E and P
Inoculations
Chlorabackbone
RFP-LVA
DT
Triple Population and AND Gate Projects
August 14
Glycerol Stock and Plasmid isolation
- pTetR-LasR-Term-Term-pLasR-RBS-CFP: Concentration: 95.4
- pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: Concentration: 108.3
Digestion
- pTetR-LasR-Term-Term-pLasR-RBS-CFP: bad results
- pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: bad results
Parts Recieved
- BBa_K091159
- BBa_K091002
- BBa_I13453
- BBa_B0034
Streaking
- BBa_K091159 pBad-LsrA
Ligation repeat
- Vector1: pTetR-LasR
- Insert1: Term-Term-pLasR-RBS-CFP
- Vector2: pLac-LuxR
- Insert 2: Term-Term-pLuxR-LasI-RBS-RFP
Single and Double Population Projects
August 14, 2012
Miniprep/Glycerol Stock
Chlorabackbone
DT
Digestion/Extraction:
DT: X and P
Chlorabackbone: E and P
Toggle: E and P
Ligation/Transformation:
DT into LuxR
TetR into pLux
LasI into pTet
LasR into DT
pLas into LacI
pLac into LuxI
Triple Population and AND Gate Projects
August 15
Innoculation
- pTetR-LuxI
- pLac-LasI
- pTetR-LasR-Term-Term-pLasR-RBS-CFP
- pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP
Colonies picked
- pBad-LsrA: 30 colonies seen: 1 picked
Testing
- Pop2 (w/o TT) / pTetR-LuxI (48 hours of incubation)
- 100/0 no results
- 100/100 no results
- 100/200 slight RFP detected no increase of RFP from 100/0
- Pop3 (w/o TT) / pLac-LasI (48 hours of incubation)
- 100/0 no results
- 100/100 no results
- 100/200 slight RFP detected no increase of CFP from 100/0
Streaking
BBa_K091109
- SP3011>1D LuxS
- SP4011>1D LuxS
Single and Double Population Projects
August 15, 2012
Transformation
LuxR-DT: 15 colonies, picked 1 colony
pLux-TetR: 35 colonies, picked 1
pTet-LasI: Negative control growth; unsuccessful
LasR-DT: 25 colonies, picked 1
pLas-LacI: 0 growth
pLac-LuxI: 15 colonies, picked 1
Ligation
LasI into pTet
Transformation
pTet-LasI
pLas-LacI
Inoculations
Chlorabackbone
Triple Population and AND Gate Projects
August 16
Colonies
- pTetR-LuxI:
- pLac-LasI
- pTetR-LasR-Term-Term-pLasR-RBS-CFP: 2 colonies seen: 1 colony picked
- pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: 0 colonies seen
- LuxS: 200 colonies seen: 1 colony picked
- LuxS: 100 colonies seen: 1 colony picked
Glycerol Stock and plasmid isolation
- pBad-LsrK: Concentration: 64.2
- pTetR-LasR-Term-Term-pLasR-RBS-CFP: Concentration:
- pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP: Concentration:
Digestion
- pTetR-LasR-Term-Term-pLasR-RBS-CFP (E/P)
- pLac-LuxR-Term-Term-pLuxR-LasI-RBS-RFP (E/P)
- pBad-LsrA (S/P) 1749
- pLsrA-LuxI-RBS-YFP (X/P)
Testing
- Pop2 (w/ TT) / pTetR-LuxI (6 hours of incubation)
- 100/0
- 100/200
- 100/400
- 100/600
- Results: After 6 and 24 hours: no considerable difference
- Pop3 (w/ TT) / pLac-LasI (6 hours of incubation)
- 100/0
- 100/200
- 100/400
- 100/600
- Results: After 6 and 24 hours: no considerable difference
- Pop3 (w/ TT) / Pop2 (w/ TT) / pTetR-LuxI (6 hours of incubation)
- 100/0
- 100/200
Digestion
- population 3 (oscillator)
- population 2 (oscillator)
- pBad->lsrK
- pLsrA-LuxI-RBS-YFP
- Term-Term (test)
Gel Extraction
- pBad-lsrK: Concentration: 53.8
- pLsrA-LuxI-RBS-YFP: Concentration: 20.0
Innoculation
- Term-term
Single and Double Population Projects
August 16, 2012
Miniprep/Glycerol Stock
LuxR-DT
pLux-TetR
LasR-DT
pLac-LacI
Chlorabackbone
Transformation Results
Negative controls had too much growth; results thrown out
Digestion/Extraction
LuxR-DT: S and P
pLux-TetR: X and P
Chlorabackbone: E and P
Ligations/Transformation
LuxR-DT and pLux-TetR
Chlorabackbone with Toggle Switch
Triple Population and AND Gate Projects
August 17
Glycerol Stock
- Population 3 w/ Term-Term
- LuxS
- LuxS
Plasmid Isolation
- Population 3 w/ Term-Term: Concentration: 126.7
- LuxS: Concentration: 40.2
- LuxS: Concentration: 52.4
- Term-Term: Concentration: 100.8
Digestion and Gel Extraction
- Population 3 w/ Term-Term: Concentration: gel not used
- LuxS: Concentration: gel not used
- LuxS: Concentration: gel not used
Ligation
- Vector 1: pLac
- Insert 1: lasI-RBS-RFP
- Vector 2: pLasR
- Insert 2: LuxI-RBS-YFP
- Vector 3: pbad-LsrK
- Insert 3: pLsrA->YFP
- Vector 4: pLac->LuxR
- Insert 4: pLuxR-RFP
- Vector 5: pTetR-LasR
- Insert 5: pLasR->CFP
Transformation
- BBa_C0080: araC
- BBa_J24674: pBad-TetR
- BBa_I14015: pLas-TetO
Single and Double Population Projects
August 17, 2012
Ligation
pLas with LacI
pTet with LasI
Inoculations
pLas
LacI
pTet
pLac
GFP
RFP-LVA
LasI
Transformation
Bba_K081014 Kit Plate 3 Well 12O Resistance AK; RFP
Triple Population and AND Gate Projects
August 18
Innoculations
- pTetR-LuxI
- pLac-lasI
- pop 2 w/TT (oscillator)
- pop 3 w/TT (oscillator)
Single and Double Population Projects
August 18, 2012
Colony Picking
LuxR-DT-pLux-TetR: 30 colonies, 1 picked
Toggle Switch in Chlorabackbone: 4 colonies, 1 picked
pLas with LacI: negative control growth; results thrown out
pTet with LasI: negative control growth; results thrown out
RFP: 20 colonies, 1 picked
Glycerol Stock
LuxR-DT-pLux-TetR
Minipreps
LuxR-DT-pLux-TetR
pLas
LacI
pTet
pLac
GFP
LasI
Triple Population and AND Gate Projects
August 19
Glycerol Stocks
- pLac-lasI-RBS-RFP
- pLasR-LuxI-RBS-YFP
- pBad-LsrK-plsrA-LuxI-RBS-YFP
- plac-LuxR-pLuxR-LasI-RBS-RFP
- pTetR-lasR-pLasR-RBS-CFP
- araC
- pBad-TetR
- pLas-TetO
Oscillator Population Tests (population with induction plasmid)
- pop2 0:1 - some fluorescence
- pop2 75:1 - no visual difference
- pop3 0:1 - some fluorescence
- pop3 75:1 - no visual difference
- pop2 and pop3 0:1 - little fluorescence
Plasmid Isolation
- pLac-lasI-RBS-RFP: Concentration: 115.8
- pLasR-LuxI-RBS-YFP: Concentration: 93.1
- pBad-LsrK-plsrA-LuxI-RBS-YFP: Concentration: 128.6
- plac-LuxR-pLuxR-LasI-RBS-RFP: Concentration: 105.9
- pTetR-lasR-pLasR-RBS-CFP: Concentration: 122.3
- araC: Concentration: 114.0
- pBad-TetR: Concentration: 315.1
- pLas-TetO: Concentration: 102.3
Digestion and gel extraction
- ad-LsrK-plsrA-LuxI-RBS-YFP: Concentration:
- plac-LuxR-pLuxR-LasI-RBS-RFP: Concentration:
- pTetR-lasR-pLasR-RBS-CFP: Concentration:
- araC: Concentration:
- pBad-TetR: Concentration:
Ligation
- Vector 1: pyear
- Insert 1: LuxS
- Vector 2: pyear
- Insert 2: LuxS
- Vector 3: pTetR
- Insert 3:lasR-TT
- Vector 4: pLac-LuxR
- Insert 4: TT
- Vector 5: pLuxR
- Insert 5: arac
- Vector 6: pBad-TetR
Single and Double Population Projects
August 19, 2012
Glycerol Stock/Plasmid Isolation
RFP
Toggle Switch in Chlorabackbone
Inoculation
RFP-LVA
Digestion/Extraction
pLac: S and P
LuxR-DT-pLux-TetR: X and P
pTet: S and P
LasI: X and P
LasR-DT: X and P
LacI: S and P
RFP: X and P
Triple Population and AND Gate Projects
August 20
Colonies picked
- pyear-LuxR: 1 picked
- pyear-LuxR: 1 picked
- pTet-lasR-TT: 1 picked
- pLac-LuxR-TT: 1 picked
- pBad-TetR-TT: 1 picked
- pLuxR-arac: 1 picked
- pLasR-TetO-RBS-CFP: 1 picked after being repeated
Innoculation
- pTetR-LuxI
- pLac-lasI
- pop3 w/TT
Single and Double Population Projects
August 20, 2012
Ligations/Transformations
LuxR-DT-pLux-TetR into pLac
LasI into pTet
LasR-DT into pTet
RFP into LacI
Triple Population and AND Gate Projects
August 21
Glycerol Stock and plasmid isolation
- pyear-LuxR: Concentration: 40.0
- pyear-LuxR: Concentration: 75.0
- pTet-lasR-T: Concentration: 127.6
Digestion and gel extraction
- pLasR-LuxI-YFP: gel not used
- pTetR-lasR-TT: gel not used
- pLuxR-araC: gel not used
- pyear-LuxS: gel not used
- pyear-LuxS: gel not used
- pop1 (test)
- pop2 (test)
- pop3 (test)
Innoculation
- pyear-LuxS
Ligation
- Vector 1: pTet-LasR-TT
Single and Double Population Projects
August 21, 2012
Colony Pickings
pLac-LuxR-DT-pLux-TetR: 24 colonies, 1 picked
pTet-LasI: 30 colonies, 3 picked
pTet-LasR-DT: 100 colonies, 2 picked
LacI-RFP: 24 colonies, 2 picked
Triple Population and AND Gate Projects
August 22
Digestion (test)
- population 2 (oscillator)
- undigested
- EcoRI
Innoculation
- population 1 (oscillator)
Colonies picked
- pTetR-lasR-TT-pLasR-LuxI-RBS-YFP
- pLuxR-araC-LasR-TT
- pLasR-TetO-RBS-CFP (2 colonies picked)
Transformation
- pLac-LuxR
Innoculation
- pLuxR-LasI-RBS-RFP
Population Testing Prep (pop2, pop3, pop2+pop3)
- 2 ml of medium added to each test tube
- 100 microliters of each population added as necessary
- .75mL of inducing population added as necessary
- pop2 w/ w/o inducer
- pop3 w/ w/o inducer
- pop2+pop3 w/ w/o inducer
Single and Double Population Projects
August 22, 2012
Glycerol Stock/Miniprep
pLac-LuxR-DT-pLux-TetR
pTet-LasI
pTet-LasR-DT
LacI-RFP
Digestion/Extraction:
pLac-LuxR-DT-pLux-TetR: S and P
GFP: X and P
LacI-RFP: S and P
pLac-LuxI: X and P
Test Digestions
pTet-LasI: E and P
pTet-LasR-DT: E and P
Ligations/Transformations
GFP into pLac-LuxR-DT-pLux-TetR
pLac-LuxI into LacI-RFP
Inoculations
RFP-LVA
pTet-GFP
RBS-YFP
August 22
Digestion (test)
- population 2 (oscillator)
- undigested
- EcoRI
- XbaI
- Spe1
- Pst1
- E/P
- X/S
Innoculation
- population 1 (oscillator)
Colonies picked
- pTetR-lasR-TT-pLasR-LuxI-RBS-YFP
- pLuxR-araC-LasR-TT
- pLasR-TetO-RBS-CFP (2 colonies picked)
Transformation
- pLac-LuxR
Innoculation
- pLuxR-LasI-RBS-RFP
Population Testing Prep (pop2, pop3, pop2+pop3)
- 2 ml of medium added to each test tube
- 100 microliters of each population added as necessary
- .75mL of inducing population added as necessary
- pop2 w/ w/o inducer
- pop3 w/ w/o inducer
- pop2+pop3 w/ w/o inducer
Single and Double Population Projects
August 23, 2012
Colony Picking
LacI-RFP-ST-pLac-LuxI; 40 colonies, 1 picked
LacI-RFP-ST-pLac-LuxI; 30 colonies, 1 picked
Triple Population and AND Gate Projects
August 23
Glycerol Stock
- pLasR-TetO-RBS-CFP (X2)
- pTetR-lasR-TT-pLasR-LuxI-RBS-YFP
- pLuxR-araC-LasR-TT
Plasmid Isolation
- pLasR-TetO-RBS-CFP: Concentration: 113.7
- pLasR-TetO-RBS-CFP: Concentration: 112.0
- pTetR-lasR-TT-pLasR-LuxI-RBS-YFP: Concentration: 167.0
- pLuxR-araC-LasR-TT: Concentration: 104.2
- pLac-lasI-RBS-RFP: Concentration: 37.0
Colonies picked
- pLac-LuxR
Population Testing from 8/22 prep after 24 hours
- 500 microliters from test tube of populations put in microcentrifuge tubes
- pop2 w/: slight increase of RFP
- pop2 w/o: some RFP
- pop3 w/: no significant increase of CFP
- test tubes were checked after 24 hours
- pop2 showed a slight increase in RFP production when it was induced in comparison to its uninduced control
- both pop3 and pop2+pop3 showed no significant differences between its positive and negative controls
- after 48 hours
- pop2 showed increase in RFP production
- pop3 showed no significant increase in CFP production
- pop2+pop3 showed a sig increase in RFP production but no CFP when it was induced compared to its negative control
Digestion
- plac-LuxR(S/P): Concentration: 19.7
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
- pLac-lasI
- pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
Ligation
- Vector: pBad-TetR-TT
- Insert: plasR-TetO-RBS-CFP
Single and Double Population Projects
August 24, 2012
Plasmid Isolation
LacI-RFP-ST-pLac-LuxI
Digestion/Extraction
pTet-LasR-DT
pTet-LasI
LacI-RFP-ST-pLac-LuxI
pLas
Ligation
pTet-LasI into pLac-LuxR-DT-pLux-TetR-GFP-ST
Triple Population and AND Gate Projects
Plasmid Isolation
- pluxR-LasI-RBS-RFP: Concentration: 42.6
Digestion
- pLuxR-LasI-RBS-RFP (X/P)
- pLuxR-araC-lasR-TT (X/P)
Innoculation
- pLuxR-LasI-RBS-RFP
- pLuxR-araC-LasR-TT
- pLsrA-LuxI-YFP
Single and Double Population Projects
August 25, 2012
Glycerol Stock/Plasmid Isolation
LacI-RFP-ST-pLac-LuxI
Digestion/Extraction
LacI-RFP-ST-pLac-LuxI
Ligation
LacI-RFP-ST-pLac-LuxI into pLas
Triple Population and AND Gate Projects
August 25
Glycerol Stock
- plac-LuxR
- pBad-TetR-TT-plasR-TetO-RBS-CFP
- pBad-TetR-TT-plasR-TetO-RBS-CFP
- pLuxR-araC-lasR-TT
Plasmid Isolation
- pLuxR-LasI-RBS-RFP: Concentration: 89.1
- pLuxR-araC-LasR-TT: Concentration: 152.9
- pBad-TetR-TT-plasR-TetO-RBS-CFP: Concentration: 200.0
- pBad-TetR-TT-plasR-TetO-RBS-CFP: Concentration: 156.0
Digestion and Gel Extraction
- pLuxR-LasI-RBS-RFP: (X/P): Concentration: 9.5
- pLuxR-araC-LasR-TT: (X/P): gel not used
- pBad-TetR-TT-plasR-TetO-RBS-CFP: (X/P): gel not used
- pBad-TetR-TT-plasR-TetO-RBS-CFP: (X/P): gel not used
Ligation
- Vector1: pLac-LuxR-TT
- Insert1: pLuxR-LasI-RBS-RFP
- Vector2: pTetR-LasR
- Insert2: pLasR-CFP
- Vector3: pLac-LuxR-TT
- Insert3: pLuxR-LasI-RBS-RFP
Primer Dilution
- I3.PsB1A2.R +661ul NFH2O -> 1:10 Dulition
- I3.DT.F +634ul NFH2O -> 1:10 Dulition
- I3.FT.M +700ul NFH2O -> 1:10 Dulition
Colony PCR
- pBad-TetR-TT-plasR-TetO-RBS-CFP
- pLuxR-araC-LasR-TT
- Primer 1: I3.24.SP1
- Primer 2: I3.PSB1A2.R
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
- pLac-lasI
- pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
- pLuxR-lasI-RBS-RFP
Triple Population and AND Gate Projects
August 26, 2012
Colony Picking
pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked
Inoculation
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
pLas-LacI-RFP-ST-pLac-LuxI
Triple Population and AND Gate Projects
August 26
Colonies Picked
- pLuxR-araC-LasR-TT: 1 colony picked
Population testing
- 2ml broth, 1ml induction, 100ul population, 30 hour incubation
- pop1+2 (+/-): no fluorescence seen
- pop2+3 (+/-): no fluorescence seen
- pop1+2+3 (+/-): no fluorescence seen
Single and Double Population Projects
August 27, 2012
Glycerol Stock/Plasmid Isolation
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
pLas-LacI-RFP-ST-pLac-LuxI
PCR
Add second LacO site to pLac
Digestion/Extraction
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
pLas-LacI-RFP-ST-pLac-LuxI
Triple Population and AND Gate Projects
August 27
Plasmid Isolation
- pLuxR-araC-LaR-TT: Concentration: 164.3
Digestion and Gel extraction
- pLuxR-araC-LaR-TT (X/P): Concentration: 55.1
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
- pLac-lasI
- pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
- pLuxR-lasI-RBS-RFP
Ligation
- Vector1: pBad-tetR-TT
- Insert1: pLasR-TetO-RBS-CFP
- 0:1 20 colonies seen
- 2:1 50 colonies seen
- Vector2:pLac-LuxR-TT
- Insert2: pLuXR-araC-lasR-TT
- 0:1 5 colonies seen
- 2:1 25 colonies seen
Single and Double Population Projects
August 28, 2012
Primer Dilutions
Triple Population and AND Gate Projects
August 28
Colony PCR
- pBad-tetR-TT-pLasR-TetO-RBS-CFP
- pLac-LuxR-TT- pLuXR-araC-lasR-TT
- Primer 1: I3.24.SP1
- Primer 2: I3.PSB1A2.R
Population Testing
- 200ul medium, 200ul induction, 4ul population, 24 hour incubation
- pop1+2 (-): no fluorescence seen
- pop1+2 (+): some sign of RFP/YFP
Ligation
- Vector:pLac-LuxR-TT
- Insert: pLuXR-araC-lasR-TT
- 0:1 0 colonies seen
- 2:1 30 colonies seen
- 4:1 15 colonies seen
Digestion and Gel Extraction
- pBad-TetR-TT (S/P): Concentration: 88.3
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
Single and Double Population Projects
August 29, 2012
Ligation
pLas-LacI-RFP-ST-pLac-LuxI into pTet-LasR-DT
Triple Population and AND Gate Projects
August 29
Population Test Prep
- 2ml medium, 400ul populations, 1500ul induction
- pop1+2 (+/-)
- pop2+3 (+/-)
- pop1+2+3 (+/-)
- 1ml medium, 200ul populations, 750ul induction
- pop2+3 (+/-)
Triple Population and AND Gate Projects
August 30
Ligation
- Vector: pBad-TetR-TT
- Insert: plasR-TetO-CFP
- 0:1 100 Colonies seen
- 1:1 200 Colonies seen
- 4:1 200 Colonies seen
Colony PCR
- pLac-LuxR-TT-pLuXR-araC-lasR-TT (X2)
- Primer 1: I3.24.SP1
- Primer 2: I3.PSB1A2.R
Colonies picked
- pLac-LuxR-TT-pLuXR-araC-lasR-TT (X2)
Single and Double Population Projects
August 31, 2012
Colony picking
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI; 50 colonies, 1 picked
PCR Reaction
Add LacO binding site to pLac; 65.2 degrees found to be optimal temperature for elongation
Transformation
pLac-LacO
Triple Population and AND Gate Projects
August 31
Glycerol Stock and Plasmid Isolation
- pLac-LuxR-TT-pLuXR-araC-lasR-TT: Concentration: 115.2
- pLac-LuxR-TT-pLuXR-araC-lasR-TT: Concentration: 77.7
Digestion and Gel Extraction
- pLac-LuxR-TT-pLuXR-araC-lasR-TT (S/P)
Colony PCR
- pBad-TetR-TT-pLasR-TetO-CFP (X2)
- Primer 1: I3.24.SP1
- Primer 2: I3.PSB1A2.R
Population Test Results
- 2ml medium, 400ul populations, 1500ul induction
- pop1+2 (+/-)
- pop2+3 (+/-)
- pop1+2+3 (+/-)
- 1ml medium, 200ul populations, 750ul induction
- pop2+3 (+/-)
Single and Double Population Projects
September 1, 2012
Glycerol Stock/Plasmid Isolation
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
Colony Picking
pLac-LacO
Inoculations
pLac-TetR
pLac-TetR-RBS-RFP
pTet-LacI
pTet-RBS-GFP-T
Triple Population and AND Gate Projects
September 1
Ligations
- Vector1: pLac-LuxR-TT
- Insert1: pLuxR-araC-LasR-TT
- Vector2: pLasR
- Insert2.1: LuxS
- Insert2.2 araC
- Vector3: TT
Transformation
- BBa_C0012: LacI
- BBa_K091002: LsrK
Innoculation
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
Single and Double Population Projects
September 2, 2012
Glycerol Stock/Plasmid Isolation
pLac-LacO
Single and Double Population Projects
September 3, 2012
Plasmid Isolation
pLac-TetR
pLac-TetR-RBS-RFP
pTet-LacI
pTet-RBS-GFP-T
Digestion/Extraction
pLac-TetR
pLac-TetR-RBS-RFP
pTet-LacI
pTet-RBS-GFP-T
Triple Population and AND Gate Projects
September 3
Glycerol Stock
- pLac-LuxR-TT-pLuxR-araC-LasR-TT
- pBad-TetR-TT-pLas-TetO-CFP
Plasmid Isolation
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
- pLac-LuxR-TT-pLuxR-araC-lasR-TT
- pBad-TetR-TT-pLas-TetO-CFP
Digestion
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator) (X/P)
- pBad-TetR-TT-pLas-TetO-CFP (X/P)
- pLac-LuxR-TT-pLuxR-araC-lasR-TT (S/P)
Innoculation
- pyear-luxS (Inducer pop1)
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
Colony PCR for I3-98-2 and I4-1-2-
Digestion
- TT-pLuxR-LasI-RFP (X/P)
- pLac-LuxR (S/P)
Single and Double Population Projects
September 4, 2012
Inoculations
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI (Atc 10 microliters)
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI (IPTG 10 microliters)
Triple Population and AND Gate Projects
September 4
Plasmid Isolation
- pBad-TetR-TT-pLasR-TetO-CFP: Concentration: 190.4
Digestion
- pBad-TetR-TT-pLasR-TetO-CFP (X/P): Concentration: 20.5
Colonies picked from I4-1-2
Single and Double Population Projects
September 5, 2012
Inoculations
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
1 with Atc
1 with IPTG
1 with No induction
Triple Population and AND Gate Projects
September 5
Glycerol Stock and Plasmid Isolation
- pLasR-LuxS
- pLasR-araC
- TT-pLsrA-LuxI-RBS-YFP
Digestion and Gel Extraction
- pLasR-LuxS
- pLasR-araC
- TT-pLsrA-LuxI-RBS-YFP
- pLuxR-TetR
- LacI
- LsrK
Innoculation
- pLac
- LasI-RFP
Single and Double Population Projects
September 6, 2012
Sequencing
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
pLac-LacO
RFP-LVA
Inoculations
Chlorabackbone
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
1 with Atc
1 with IPTG
1 with No induction
Digestion/Extraction
Chlorabackbone
Triple Population and AND Gate Projects
September 6
Plasmid Isolation and Glycerol Stock
- pLac
- LasI-RFP
- pLac-LuxR-TT-pLuxR-araC-LasR-TT
Digestion and Gel Extraction
- pLac
- LasI-RFP
- pLac-LuxR-TT-pLuxR-araC-LasR-TT
Ligation
- Vector1:pLac-LuxR-TT-pLuxR-araC-LasR-TT
- Insert1: pBad->>CFP
- Vector2: pLsrA
- Insert2: LacI
- Vector3: pLasR-LuxS
Single and Double Population Projects
September 7, 2012
Inoculation
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
pLac-RBS-GFP-T
pTet-RBS-GFP-T-pLac-TetR
pLac-RBS-GFP-T-pTet-LacI
RFP-LVA
pLac-LacO
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
pTet-LasI
pLac-LuxR-DT-pLux-TetR
LuxR-DT-pLux-TetR
LuxR-DT
pLux-TetR
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
pLas-LacI-RFP-ST-pLac-LuxI
LacI-RFP-ST-pLac-LuxI
LacI-RFP-ST
pLac-LuxI
pTet-LasR-DT
LasR-DT
pLac-LacO
pTet-LacI
RBS-GFP-ST
Triple Population and AND Gate Projects
September 7
Test Digestions
- pLac
- LasI-RFP
Innoculation
- Term-Term
Single and Double Population Projects
September 8, 2012
Time-Lapse Experiment to observe toggle switch
Plasmid Isolation
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
pLac-RBS-GFP-T
pTet-RBS-GFP-T-pLac-TetR
pLac-RBS-GFP-T-pTet-LacI
RFP-LVA
pLac-LacO
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
pTet-LasI
pLac-LuxR-DT-pLux-TetR
LuxR-DT-pLux-TetR
LuxR-DT
pLux-TetR
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
pLas-LacI-RFP-ST-pLac-LuxI
LacI-RFP-ST-pLac-LuxI
LacI-RFP-ST
pLac-LuxI
pTet-LasR-DT
LasR-DT
pTet-LacI
GFP
Ligations
pLac-TetR into Chlora
pLac-RBS-GFP-T into Chlora
pTet-RBS-GFP-T into Chlora
pTet-LacI into Chlora
]Digestion/Extraction
GFP
pLac-LacO
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP
pLac-RBS-GFP-T
pTet-RBS-GFP-T-pLac-TetR
pLac-RBS-GFP-T-pTet-LacI
RFP-LVA
pLac-LacO
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI
pTet-LasI
pLac-LuxR-DT-pLux-TetR
LuxR-DT-pLux-TetR
LuxR-DT
pLux-TetR
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
pLas-LacI-RFP-ST-pLac-LuxI
LacI-RFP-ST-pLac-LuxI
LacI-RFP-ST
pLac-LuxI
Triple Population and AND Gate Projects
September 8
Colonies Picked
- 14-7-5
- 14-7-7
- 14-8-2
Single and Double Population Projects
September 9, 2012
Colony Picking
pLac-TetR, 1 colony picked
pLac-RBS-GFP-T, 1 colony picked
pTet-LacI, 1 colony picked
Ligation
pLac-LacO-GFP
Triple Population and AND Gate ProjectsSeptember 9
Glycerol Stock and Plasmid Isolation
- pLac-LuxR-TT-pLuxR-araC-LasR-TT-pBad-TetR-TT-pLasR-TetO-CFP
- pLsrA-LacI
- pLasR-LuxS-RBS-CFP
Digestion and Gel Extraction
- pLac-LuxR-TT-pLuxR-araC-LasR-TT-pBad-TetR-TT-pLasR-TetO-CFP
Ligations
- Vector1: Term-Term
- Insert1-1: pLsrA-LacI
- Insert1-2: pLuxR-TetR
- Insert1-3: pLsrA-LuxI-RBS-YFP
- Insert1-4: pLasR-LuxS-RBS-CFP
- Insert1-5: pLasR-araC
- Vector2: pLac
- Insert2: 13-12-8
Single and Double Population Projects
September 10, 2012
Glycerol Stock/Miniprep
pLac-TetR
pLac-RBS-GFP-T
pTet-LacI
Gel Extraction
pLac-LacO-GFP
pTet-LacI
Ligation
pTet-LacI into pLac-LacO-RBS-GFP-ST
pLac-RBS-GFP-T-pTet-LacI into chlora backbone
Triple Population and AND Gate Projects
September 10
Colonies Picked
- I4-11-2
- I4-11-3
- I4-11-4
- I4-11-5
- I4-11-6
- I4-8-4
Plasmid Isolation
- pLac
- LuxR
Single and Double Population Projects
September 11, 2012
PCR
pLac-LacO
pLac-LacO x2
Single and Double Population Projects
September 12, 2012
Digestion/Gel Extraction
pTet-LacI-pLac-LacO-RBS-GFP-ST
Experiments
Toggle with 20 micro liters IPTG
Toggle with 40 micro liters ATc
Strain 1 of dual population toggle with inducer strain
Strain 2 of dual population toggle with inducer strain
Ligation
pLac-LacO-RBS-GFP-ST-pTet-LacI into chlora backbone
Triple Population and AND Gate
September 13
Glycerol Stock and Plasmid Isolation
- I4-8-4
- I4-8-5
- I4-8-6
- I4-11-2
- I4-11-3
- I4-11-4
- I4-11-5
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
- pLac-lasI
- pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
Ligation
- Vector: Const. Promoter
- Insert1-1: I3-28-4
- Insert1-2: I4-6-6
- Insert1-3: I4-16-2
- Vector2: TT-pLasR-LuxS-RBS-CFP
Ligations for Chlora
- I4-14-7
- I4-14-8
- I4-14-10
Transformation
- I4-18-1
- I4-18-2
- I4-18-3
- I401804
Innoculation
- I3-28-2
Single and Double Population Projects
September 14, 2012
Ligation
pTet-LacI-RBS-GFP(LVA)-T-T-pLac-TetR-RBS-RFP into Chlora backbone
pLac-RBS-GFP-T into Chlora backbone
pTet-RBS-GFP-T-pLac-TetR into Chlora backbone
pLac-RBS-GFP-T-pTet-LacI into Chlora backbone
RFP-LVA into Chlora backbone
pLac-LacO into Chlora backbone
pLac-LuxR-DT-pLux-TetR-GFP-ST-pTet-LasI into Chlora backbone
pTet-LasI into Chlora backbone
pLac-LuxR-DT-pLux-TetR into Chlora backbone
LuxR-DT-pLux-TetR into Chlora backbone
LuxR-DT into Chlora backbone
pLux-TetR into Chlora backbone
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI into Chlora backbone
pLas-LacI-RFP-ST-pLac-LuxI into Chlora backbone
LacI-RFP-ST-pLac-LuxI into Chlora backbone
LacI-RFP-ST into Chlora backbone
pLac-LuxI into Chlora backbone
pLac-LacO x2-RBS-GFP-ST-pTet-LacI
Glycerol Stock/Plasmid Isolation
pLac-LacO-GFP
Digestion
pLac-LacO-GFP
pTet-LacI
pLac-LacO x2-RBS-GFP-ST-pTet-LacI
Inoculation
pLac-GFP-pTet-LacI
Triple Population and AND Gate
September 15
Plasmid Isolation
- I4-16-4 CP-LasR
- I4-16-5 CP-LsrK
- I4-16-6 CP-LuxR
- I4-17-4 TT-pLasR->>TetR
- I4-17-6 pLac-LuxR
- I4-17-8 pLuxR-LasI-RFP
Colonies picked
- I4-19-19
- I4-22-8
- I4-22-9
- I4-21-2
Digestion
- I4-16-4
Ligations
- Vector1: pTetR-LasR
- Insert1: TT-pLasR-LuxS-RFP-TT-pLuxR-TetR
- Vector2: Term-Term
- Insert2: pLac-LuxR
- Vector3: pLuxR-LasII-RFP
- Insert3: TT-pLsrA-LacI
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
Triple Population and AND Gate
September 18
Glycerol Stock and Plasmid Isolation
- pTetR-LasR-TT-pLasR-LuxS-CFP-TT-pLuxR-TetR
- TT-pLac-LuxR
- pLuxR-LasI-RFP-TT-pLsrA-LacI
Digestion and Gel Extraction
- I4-10-7
- I4-25-14
- I4-25-16
- I4-25-18
Ligation
- Vector1: CP-LasR
- Insert1: TT
- Vector2: TT-pLsrA-LuxI-YFP
- Insert 2: TT-pLasR-araC
Innoculation
- Pop3 AND Gate
- Pop2 AND Gate
- Pop1 AND Gate
Testing AND Gate
- Pop2 and 3
- Pop1 and 3
- Pop 1 2 3
Triple Population and AND Gate
September 19
Plate Experiments for AND Gate
Triple Population and AND Gate
September 20
Glycerol Stock and Plasmid Isolation
- Cp-LasR-TT
- TT-pLsrA->>araC
- TT-pTetR->>TetR
- CP-LsrK->>LuxR
- TT-pLuxR->>LacI
Digestions (repeated 3X)
- Cp-LasR-TT
- TT-pLsrA->>araC
- TT-pTetR->>TetR
- CP-LsrK->>LuxR
- TT-pLuxR->>LacI
Triple Population and AND Gate
September 22
Ligations (Repeated)
- Vector1: CP-LasR
- Insert1: TT
- Vector2: TT-pLsrA-LuxI-YFP
- Insert 2: TT-pLasR-araC
- Vector3: TT
- Insert3.1: pTetR->>TetR
- Insert3.2: pLuxR->>LacI
- Vector4: CP-LsrK
- Insert4: TT-pLac-LuxR
Single and Double Population Projects
September 22, 2012
Single toggle experiment - No induction at start, check every 6 hours, induce with IPTG after first 6 hours, and induce with ATc in new tube after 12 Hours
Triple Population and AND Gate
September 22
Ligations (Repeated)
- Vector1: CP-LasR
- Insert1: TT
- Vector2: TT-pLsrA-LuxI-YFP
- Insert 2: TT-pLasR-araC
- Vector3: TT
- Insert3.1: pTetR->>TetR
- Insert3.2: pLuxR->>LacI
- Vector4: CP-LsrK
- Insert4: TT-pLac-LuxR
Triple Population and AND Gate
September 23
Digestions
- Cp-LasR-TT
- TT-pLsrA->>araC
- TT-pTetR->>TetR
- CP-LsrK->>LuxR
- TT-pLuxR->>LacI
Innoculations for AND Gate
- Pop1
- Pop2
- Pop3
Testing AND Gate
- Pop 1 3
- Pop 2 3
- Pop 1 2 3
Innoculation
- pyear-luxS
- pBad-LsrK-pLsaA-LuxI-RBS-YFP (pop1 oscillator)
- pTetR-LuxI
- pLacI-LuxR-TT-pLuxR-LasI-RBS-RFP (pop2 oscillator)
- pLac-lasI
- pTetR-lasR-TT-pLasR-RBS-CFP (pop3 oscillator)
Triple Population and AND Gate
September 23
Plasmid Isolation
- TT-pLsrA-LuxI->>araC
- TT-pTetR-TetR
- CP-LsrK->>LuxR
- TT-pLuxR-LacI
Digestions and Gel Extraction
- TT-pLsrA-LuxI->>araC
- TT-pTetR-TetR
- CP-LsrK->>LuxR
- TT-pLuxR-LacI