Team:Tokyo-NoKoGen/Notebook/diary
From 2012.igem.org
(Difference between revisions)
(4 intermediate revisions not shown) | |||
Line 9: | Line 9: | ||
<BR> | <BR> | ||
<BR> | <BR> | ||
- | + | <h2>July</h2> | |
- | 8-14< | + | <h3>8-14</h3> |
Meeting :<BR> | Meeting :<BR> | ||
lux team member: Jinhee LEE, Sumiya KAWAI, Miho NARITA, Tomomi YOKOYAMA, Mayumi NAKAMURA <BR> | lux team member: Jinhee LEE, Sumiya KAWAI, Miho NARITA, Tomomi YOKOYAMA, Mayumi NAKAMURA <BR> | ||
Line 17: | Line 17: | ||
<BR> | <BR> | ||
- | August< | + | <h2>August</h2> |
- | 5-11< | + | <h3>5-11</h3> |
Meeting : <BR> | Meeting : <BR> | ||
Small session on gene experiments using iGEM biobrick.<BR><BR> | Small session on gene experiments using iGEM biobrick.<BR><BR> | ||
Line 26: | Line 26: | ||
<BR> | <BR> | ||
- | 19-25< | + | <h3>19-25</h3> |
Rhodopsin team :<BR> | Rhodopsin team :<BR> | ||
construction of blue light sensor.<BR> | construction of blue light sensor.<BR> | ||
Line 36: | Line 36: | ||
<BR><BR> | <BR><BR> | ||
- | 26-9/1< | + | <h3>26-9/1</h3> |
Rhodopsin team :<BR> | Rhodopsin team :<BR> | ||
construction of ⊿EnvZ competent cell<BR><BR> | construction of ⊿EnvZ competent cell<BR><BR> | ||
Line 43: | Line 43: | ||
“Coli express for long distance communication”<BR><BR> | “Coli express for long distance communication”<BR><BR> | ||
Lux team :<BR> | Lux team :<BR> | ||
- | lux operon was cloned from | + | lux operon was cloned from <I>Photobacterim phosphorium</I> genome DNA. Most sequence was confirmed by sequence analysis. |
+ | <br><br> | ||
+ | <div align=center><img src="https://static.igem.org/mediawiki/2012/f/f8/Coli3.jpg" height="50%" width="65%"/></div> | ||
<BR><BR> | <BR><BR> | ||
- | 2-8< | + | <h3>2-8</h3> |
Meeting :<BR> | Meeting :<BR> | ||
lux team and rhodopsin team made small presentation about experiments.<BR><BR> | lux team and rhodopsin team made small presentation about experiments.<BR><BR> | ||
Rhodopsin team :<BR> | Rhodopsin team :<BR> | ||
- | insertion of PompR(+)-RBS-GFP-DT under blue light sensor biobrick.( | + | insertion of PompR(+)-RBS-GFP-DT under blue light sensor biobrick.(BBa_K769000)<BR> |
plasmid extraction of blue light sensor + GFP and sequence analysis. | plasmid extraction of blue light sensor + GFP and sequence analysis. | ||
<BR><BR> | <BR><BR> | ||
- | 9-15< | + | <h3>9-15</h3> |
Lux team : <BR> | Lux team : <BR> | ||
- | lux bio-brick (pSB1C3-PBAD-RBS-lux operon-DT) was constructed! E. coli TOP10 was transformed with this plasmid.<BR> | + | lux bio-brick (pSB1C3-PBAD-RBS-lux operon-DT) was constructed! <I>E. coli</I> TOP10 was transformed with this plasmid.<BR> |
Evaluation of lux bio-brick. Luminescence was measured using plate reader. We could see luminescence in dark room.<BR> | Evaluation of lux bio-brick. Luminescence was measured using plate reader. We could see luminescence in dark room.<BR> | ||
- | Design primers to clone rib operon from E.coli genome DNA<BR> | + | Design primers to clone rib operon from <I>E.coli</I> genome DNA<BR> |
lux bio-brick that constitutive expression of lux gene was constructed. We expected more luminescence using strong constitutive expression promoter.<BR> | lux bio-brick that constitutive expression of lux gene was constructed. We expected more luminescence using strong constitutive expression promoter.<BR> | ||
<BR> | <BR> | ||
Line 69: | Line 71: | ||
Meeting :<BR> | Meeting :<BR> | ||
Our team T-shirt design idea has been completed.<BR> | Our team T-shirt design idea has been completed.<BR> | ||
- | + | <div align=center><img src="https://static.igem.org/mediawiki/2012/0/02/Tshirt.png"></div> | |
<BR><BR> | <BR><BR> | ||
- | 16-22< | + | <h3>16-22</h3> |
Lux team :<BR> | Lux team :<BR> | ||
- | rib operon was cloned | + | rib operon was cloned from <I>E.coli</I> genome DNA. Most sequence was confirmed by sequence analysis<BR> |
Evaluation of color change biobrick.<BR><BR> | Evaluation of color change biobrick.<BR><BR> | ||
Meeting :<BR><BR> | Meeting :<BR><BR> | ||
Line 80: | Line 82: | ||
Poster session team<BR> | Poster session team<BR> | ||
We began to design poster and slide.<BR> | We began to design poster and slide.<BR> | ||
- | + | <div align=center><img src="https://static.igem.org/mediawiki/2012/0/02/Col.png"></div> | |
<BR><BR> | <BR><BR> | ||
- | 23-29< | + | <h3>23-29</h3> |
Rhodopsin team : <BR> | Rhodopsin team : <BR> | ||
Reevaluation of blue light sensor.<BR> | Reevaluation of blue light sensor.<BR> | ||
After preculture, transformants were culture under white light or dark condition.<BR><BR> | After preculture, transformants were culture under white light or dark condition.<BR><BR> | ||
Lux team :<BR> | Lux team :<BR> | ||
- | evaluation of fast luminescence biobrick.<BR><BR> | + | evaluation of fast luminescence biobrick. |
+ | <br> | ||
+ | <div align=center><img src="https://static.igem.org/mediawiki/2012/5/59/Fast.png"></div> | ||
+ | |||
+ | <BR><BR> | ||
Latest revision as of 03:39, 27 September 2012
Diary
July
8-14
Meeting :lux team member: Jinhee LEE, Sumiya KAWAI, Miho NARITA, Tomomi YOKOYAMA, Mayumi NAKAMURA
rhodopsin team member: Hiroto OKANO, Genki SAKAI, Hayato TSURUTA, Somin LEE
August
5-11
Meeting :Small session on gene experiments using iGEM biobrick.
Lux team :
Design primers to clone lux operon from photobacterim phosphorium genome DNA.
19-25
Rhodopsin team :construction of blue light sensor.
Pconst.(H)-RBS-NpSRII-9a.a.linker_NpHtrII-EnvZ-DT
sequence analysis of constructed blue light sensor biobrick.
Meeting :
lux team and rhodopsin team made small presentation about experiments.
26-9/1
Rhodopsin team :construction of ⊿EnvZ competent cell
Meeting :
Our project title and team character was desided!
“Coli express for long distance communication”
Lux team :
lux operon was cloned from Photobacterim phosphorium genome DNA. Most sequence was confirmed by sequence analysis.
2-8
Meeting :lux team and rhodopsin team made small presentation about experiments.
Rhodopsin team :
insertion of PompR(+)-RBS-GFP-DT under blue light sensor biobrick.(BBa_K769000)
plasmid extraction of blue light sensor + GFP and sequence analysis.
9-15
Lux team :lux bio-brick (pSB1C3-PBAD-RBS-lux operon-DT) was constructed! E. coli TOP10 was transformed with this plasmid.
Evaluation of lux bio-brick. Luminescence was measured using plate reader. We could see luminescence in dark room.
Design primers to clone rib operon from E.coli genome DNA
lux bio-brick that constitutive expression of lux gene was constructed. We expected more luminescence using strong constitutive expression promoter.
Rhodopsin team :
evaluation of blue light sensor.
After preculture, transformants were culture under blue light or dark condition.
But cells were not growth well.
Meeting :
Our team T-shirt design idea has been completed.
16-22
Lux team :rib operon was cloned from E.coli genome DNA. Most sequence was confirmed by sequence analysis
Evaluation of color change biobrick.
Meeting :
Presentation team
Poster session team
We began to design poster and slide.
23-29
Rhodopsin team :Reevaluation of blue light sensor.
After preculture, transformants were culture under white light or dark condition.
Lux team :
evaluation of fast luminescence biobrick.