Team:Paris-Saclay/Project/Notebook/Week 10

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='''Week 10'''=
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[[Category:Team:Paris-Saclay/Project Gemote/Notebook|j]]
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__NOTOC__
====6th August====
====6th August====
Line 9: Line 63:
*Liquid culture of B1 in order to prepare a glycerol stock
*Liquid culture of B1 in order to prepare a glycerol stock
-
**Receipt of new primers
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**Reception of new primers
**2 Forward
**2 Forward
**3 Reverse
**3 Reverse
**Plasmid Reverse
**Plasmid Reverse
-
 
====8th August====
====8th August====
-
*Amplification of the plasmid pSB1A2, BBa_K274100 and BBa_K115017 by PCR with the new primers. Visualization by electrophoresis on a 2% Agarose gel for BBa_K115017 and a 0.8% Agarose gel for BBa_K274100 and the plasmid pSB1A2. We are expecting a band at 147 bp for BBa_K115017, 3408 bp for BBa_K274100 and 2079 for the plasmid.
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{| width="85%"
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[[File:Week10-2.jpg|right|300px]]
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|-
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| style="width: 50%;"| Amplification of the plasmid pSB1A2, BBa_K274100 and BBa_K115017 by PCR with the new primers. Visualization by electrophoresis on a 2% Agarose gel for BBa_K115017 and a 0.8% Agarose gel for BBa_K274100 and the plasmid pSB1A2. We are expecting a band at 147 bp for BBa_K115017, 3408 bp for BBa_K274100 and 2079 for the plasmid.
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| style="width: 35%;"| [[File:Week10-2.jpg|right|330px]]
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|}
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PCR program used:
PCR program used:
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[[File:Week10-3.jpg|600px]]
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====9th August====
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{| width="85%"
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|-
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| style="width: 50%;"|New amplification by PCR of the plasmid pSB1A2, BBa_K274100 and BBa_K115017 as it has been done the day before.
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| style="width: 35%;"| [[File:Week10-4.jpg|right|330px]]
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|}
 +
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*Digestion by EcoRI of the plasmid that contains BBa_K274100.
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====10th August====
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{| width="85%"
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|-
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| style="width: 50%;"|Amplification by PCR of BBa_K274100 already digested by EcoRI. Visualization by electrophoresis on a 0.8% Agarose gel.
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| style="width: 35%;"| [[File:Week10-5.jpg|right|250px]]
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|}
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PCR program used:
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[[File:Week10-8.jpg|400px]]
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{| width="85%"
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|-
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| style="width: 50%;"|Miniprep of BBa_K274100 followed by Nanovue to determine the concentration of the sample
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| style="width: 35%;"| [[File:Week10-6.jpg|right|330px]]
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|-
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| style="width: 50%;"|Miniprep of the Plasmid pSB1A2 followed by Nanovue to determine the concentration of the sample
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| style="width: 35%;"| [[File:Week10-7.jpg|right|330px]]
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|}
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*Digestion by HindIII of the plasmid pSB1A2 in order to linearize it.
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{| width="85%"
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|-
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| style="width: 50%;"|Digestion of BBa_K115017 by DPNI to eliminate the plasmid matrix. Visualization by electrophoresis on a 2% Agarose gel. We are expecting a band at 123 bp.
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| style="width: 35%;"| [[File:Week10-1.jpg|right|280px]]
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|}
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Latest revision as of 00:32, 27 September 2012

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Week 10

6th August

  • Sending of the B1 sample to sequencing with two pairs of primers
    • K-274100 Forward and Reverse
    • Plasmid pSB1A2 Forward and Reverse


7th August

  • Liquid culture of B1 in order to prepare a glycerol stock
    • Reception of new primers
    • 2 Forward
    • 3 Reverse
    • Plasmid Reverse

8th August

Amplification of the plasmid pSB1A2, BBa_K274100 and BBa_K115017 by PCR with the new primers. Visualization by electrophoresis on a 2% Agarose gel for BBa_K115017 and a 0.8% Agarose gel for BBa_K274100 and the plasmid pSB1A2. We are expecting a band at 147 bp for BBa_K115017, 3408 bp for BBa_K274100 and 2079 for the plasmid.
Week10-2.jpg


PCR program used: Week10-3.jpg

9th August

New amplification by PCR of the plasmid pSB1A2, BBa_K274100 and BBa_K115017 as it has been done the day before.
Week10-4.jpg
  • Digestion by EcoRI of the plasmid that contains BBa_K274100.


10th August

Amplification by PCR of BBa_K274100 already digested by EcoRI. Visualization by electrophoresis on a 0.8% Agarose gel.
Week10-5.jpg


PCR program used: Week10-8.jpg

Miniprep of BBa_K274100 followed by Nanovue to determine the concentration of the sample
Week10-6.jpg
Miniprep of the Plasmid pSB1A2 followed by Nanovue to determine the concentration of the sample
Week10-7.jpg
  • Digestion by HindIII of the plasmid pSB1A2 in order to linearize it.
Digestion of BBa_K115017 by DPNI to eliminate the plasmid matrix. Visualization by electrophoresis on a 2% Agarose gel. We are expecting a band at 123 bp.
Week10-1.jpg

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