Team:Korea U Seoul/Project/Description

From 2012.igem.org

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<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacterial leaf blight severely damages agriculture and nation’s economy. BLB is a major concern in countries where the staple food is rice. Bacterial blight is reported to have reduced Asia's annual rice production by as much as 60%. For example, in Japan, about 300,000 to 400,000 hectares of rice were affected by the disease in recent years. There were 20% to 50% yield losses reported in severely infected fields. In Indonesia, losses were higher than those reported in Japan. In India, millions of hectares were severely infected, causing yield losses from 6% to 60%.  
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacterial leaf blight severely damages agriculture and nation’s economy. BLB is a major concern in countries where the staple food is rice. Bacterial blight is reported to have reduced Asia's annual rice production by as much as 60%. For example, in Japan, about 300,000 to 400,000 hectares of rice were affected by the disease in recent years. There were 20% to 50% yield losses reported in severely infected fields. In Indonesia, losses were higher than those reported in Japan. In India, millions of hectares were severely infected, causing yield losses from 6% to 60%.  
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             <br><p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Because of its devastating impact on rice production, full genomic map of <i> X. oryzae pv. oryzae </i> is first sequenced in Korea which was later named <i> Xanthomonas oryzae </i> KACC10331. Still majority of protein functions and mechanisms are unknown, previous researches give us insight on how <i> X. oryzae pv. oryzae </i> causes BLB. Based on previous researches, it was proven that bacterial Rax gene complex (Rax A, B, C, P, Q, R, H) and its protein products are responsible for BLB. In fact, Rax P, Q complex produces protein called Ax21, a short oligopeptide attached to sulfur inducing disease and provoking immune response. Then Ax21 is secreted by Rax A, B, C complex. It is known that Ax21 also acts not only as pathogen, but as a quorum sensing molecule. Ax21 is then detected by Rax R, H informing any changes in environment. Yet, the mechanism how Ax21 induces BLB remains unclear.
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             <br><p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Because of its devastating impact on rice production, full genomic map of <i> X. oryzae pv. oryzae </i> is first sequenced in Korea which was later named <i> Xanthomonas oryzae </i> KACC10331. Still majority of protein functions and mechanisms are unknown, previous researches give us insight on how <i> X. oryzae pv. oryzae </i> causes BLB. Based on previous researches, it was proven that bacterial rax genes (rax A, B, C, P, Q, R, H) and its protein products are responsible for BLB. In fact, Rax P, Q complex produces protein called Ax21, a short oligopeptide attached to sulfur inducing disease and provoking immune response. Then Ax21 is secreted by RaxA,B and C complex. It is known that Ax21 also acts not only as a ligand for plant receptor Xa21, but as a quorum sensing molecule. Ax21 is then detected by RaxR and H proteins informing any changes in environment. Yet, the mechanism how Ax21 induces BLB in rice remains unclear.
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Revision as of 16:35, 26 September 2012

Rice Guardian

A. Background and Abstract

     Bacterial leaf blight disease (BLB) is one of the prominent vascular diseases in irrigated rice. This disease can cause up to 50% yield reduction . Bacterial leaf blight in rice is caused by infection of bacteria known as X. oryzae pv. oryzae (Korean specie: Xanthomonas oryzae KACC10331), a yellow, slime-producing, motile, gram negative rod with a polar flagellum . It reaches the vascular tissue, particularly the xylem, from where it multiplies and spreads throughout the plant. An infected leaf has yellow watersoaked lesions at the margin of its leaf blade. The lesions run parallel along the leaf and when they join together may cover the whole leaf. The infection also accompanies notable symptoms such as seeding wilt, yellow leaf, and panicles sterile.


Figure.1: bacterial leaf blight rice infected by Xanthomonas oryzae KACC10331

     Bacterial leaf blight severely damages agriculture and nation’s economy. BLB is a major concern in countries where the staple food is rice. Bacterial blight is reported to have reduced Asia's annual rice production by as much as 60%. For example, in Japan, about 300,000 to 400,000 hectares of rice were affected by the disease in recent years. There were 20% to 50% yield losses reported in severely infected fields. In Indonesia, losses were higher than those reported in Japan. In India, millions of hectares were severely infected, causing yield losses from 6% to 60%.


     Because of its devastating impact on rice production, full genomic map of X. oryzae pv. oryzae is first sequenced in Korea which was later named Xanthomonas oryzae KACC10331. Still majority of protein functions and mechanisms are unknown, previous researches give us insight on how X. oryzae pv. oryzae causes BLB. Based on previous researches, it was proven that bacterial rax genes (rax A, B, C, P, Q, R, H) and its protein products are responsible for BLB. In fact, Rax P, Q complex produces protein called Ax21, a short oligopeptide attached to sulfur inducing disease and provoking immune response. Then Ax21 is secreted by RaxA,B and C complex. It is known that Ax21 also acts not only as a ligand for plant receptor Xa21, but as a quorum sensing molecule. Ax21 is then detected by RaxR and H proteins informing any changes in environment. Yet, the mechanism how Ax21 induces BLB in rice remains unclear.


Figure 2. Genes responsible for Ax21 production, a main source of pathogen inducing BLB.



B. Project overview

     Unfortunately, there is no way to stop BLB. Only several precautionary measures were given to farmers. Several attempts to tackle spreading of disease were ineffective; for example, genetically modified rice was not effective . It is evident that solution for reducing BLB is in killing pathogen, not in rice. Thus we decided to create bacteria that are able to detect and kill X. oryzae KACC10331(Korean specie). Since Ax21 is major pathogen that causes BLB and ever present molecule that signifies presence of X. oryzae KACC10331, we decided to make synthetic bacteria that detects Ax21 and furthermore kill them. We will use rax R and H gene promoters to detect Ax21. As a result of transcription activation, gene will synthesize bacteriocin to kill the bacteria. We hope our project can minimize the damage caused by the bacteria.


Figure 3. Plasmid construction of Rice Guardian