Team:Exeter/lab book/gibs/wk9

From 2012.igem.org

(Difference between revisions)
(Added text)
Line 111: Line 111:
       </font>
       </font>
-
     <!------------ENTER LAB BOOK HERE: PLEASE INCLUDE DATES WITHIN THE WEEK------------>  
+
     <!<p><b>**Monday 3.9.12**</b></p><br>
 +
 
 +
<p>Gibson PCR again</p><p>
 +
Fragments and concentrations as 30.8.12</p><p>
 +
<a href="https://2012.igem.org/Team:Exeter/lab_book/proto/12" style="color:#1d1d1b"><u>3 step PCR</u></a></p><p>
 +
<a href="https://2012.igem.org/Team:Exeter/lab_book/proto/7" style="color:#1d1d1b"><u>Two step PCR</u></a></p><br><p>
 +
PCR setup: </p><p>
 +
98 °C for 30s</p><p>
 +
98 °C for 10s, 69 °C for 30s, 72 °C for 20s – X 5</p><p>
 +
98 °C for 10s, 72 °C for 30s – X 25</p><p>
 +
72 °C for 10minutes</p><p>
 +
Hold temp. 4 °C</p><br><p>
 +
 
 +
Ran gel – only <i>wfcA</i> 1 & 2 worked</p><br><p>
 +
 
 +
 
 +
<b>**Tuesday 4.9.12**<b></p><br><p>
 +
Mega-miniprep day: Due to various iGEM commitments, an overwhelming number of minipreps was required. LB broth was inoculated 3.9.12 - Four colonies from each plate from all transformations from 21.08.12 onwards were put in broth and miniprepped (see Freddie’s lab book for 3 gene inducible plasmid for details) </p><p>
 +
<p>Miniprep according to<ahref="http://www.fermentas.com/templates/files/tiny_mce/coa_pdf/coa_k0502.pdf" style="color:#57B947" target="_blank"><u>Fermentas protocol</u></a></p>
 +
 
 +
<p><b>**Wednesday 5.9.12**</b></p><br><p>
 +
Used nanodrop spectrophotometer to find concentrations from minipreps the previous day</p><br><p>
 +
 
 +
Gibson PCR of Pbad, <i>wbnJ</i>, <i>wbbC</i> and <i>wbnK</i> 2. </p><p>
 +
DNA 1 µl, water 33 µl</p><p>
 +
 
 +
 
 +
<a href="https://2012.igem.org/Team:Exeter/lab_book/proto/12" style="color:#1d1d1b"><u>3 step PCR</u></a></p><p>
 +
<a href="https://2012.igem.org/Team:Exeter/lab_book/proto/7" style="color:#1d1d1b"><u>2 step PCR</u></a></p><br><p>
 +
PCR setup: </p><p>
 +
98 °C for 30s</p><p>
 +
98 °C for 10s, 50 °C for 30s, 72 °C for 20s – X 5</p><p>
 +
98 °C for 10s, 72 °C for 30s – X 25</p><p>
 +
72 °C for 10 minutes</p><p>
 +
Hold temp. 4 °C</p><br><p>
 +
 
 +
Gel run – no success</p><br><p>
 +
 
 +
 
 +
<b>**Thursday 6.9.12**</b></p><br><p>
 +
Gibson PCR using Immomix red (2x). Pbad, <i>wbnJ</i>, <i>wbbC</i>, <i>wbnK</i> 2. </p><p>
 +
Immomix red 25 µl</p><p>
 +
DNA 1 µl</p><p>
 +
Primer 1 – 2 µl</p><p>
 +
Primer 2 – 2 µl</p><p>
 +
Immomix red 2x – 25 µl</p><p>
 +
Water  - 20 µl</p><br><p>
 +
 
 +
PCR setup: </p><p>
 +
95 °C for 10 minutes</p><p>
 +
95 °C for 10s,  55 °C for 30s, 72 °C for 30s – X 25</p><p>
 +
Hold temp. 4 °C</p><br><p>
 +
 
 +
<b>**Friday 7.9.12**<b></p><br><p>
 +
Ran gel from previous PCR – <i>wbbC</i> worked (although significant blurring – fewer PCR steps may have helped.) </p><p>
 +
Gibson PCR of Pbad, <i>wbnJ</i> and <i>wbnK</i> 2 using immomix red again</p><p>
 +
Volumes as on 6.9.12</p><br><p>
 +
 
 +
PCR setup: </p><p>
 +
95 °C for 10 minutes</p><p>
 +
95 °C for 10s,  65 °C for 30s,  72 °C for 30s – X 5</p><p>
 +
4 °C hold step</p><br><p>
 +
 
 +
Ran gel – no success</p>
 +
      
      
     </font>
     </font>

Revision as of 17:38, 25 September 2012

ExiGEM2012 Lab Book Gibs wk6

Operon Construction: 3rd - 7th September 2012

**Monday 3.9.12**


Gibson PCR again

Fragments and concentrations as 30.8.12

3 step PCR

Two step PCR


PCR setup:

98 °C for 30s

98 °C for 10s, 69 °C for 30s, 72 °C for 20s – X 5

98 °C for 10s, 72 °C for 30s – X 25

72 °C for 10minutes

Hold temp. 4 °C


Ran gel – only wfcA 1 & 2 worked


**Tuesday 4.9.12**


Mega-miniprep day: Due to various iGEM commitments, an overwhelming number of minipreps was required. LB broth was inoculated 3.9.12 - Four colonies from each plate from all transformations from 21.08.12 onwards were put in broth and miniprepped (see Freddie’s lab book for 3 gene inducible plasmid for details)

Miniprep according toFermentas protocol

**Wednesday 5.9.12**


Used nanodrop spectrophotometer to find concentrations from minipreps the previous day


Gibson PCR of Pbad, wbnJ, wbbC and wbnK 2.

DNA 1 µl, water 33 µl

3 step PCR

2 step PCR


PCR setup:

98 °C for 30s

98 °C for 10s, 50 °C for 30s, 72 °C for 20s – X 5

98 °C for 10s, 72 °C for 30s – X 25

72 °C for 10 minutes

Hold temp. 4 °C


Gel run – no success


**Thursday 6.9.12**


Gibson PCR using Immomix red (2x). Pbad, wbnJ, wbbC, wbnK 2.

Immomix red 25 µl

DNA 1 µl

Primer 1 – 2 µl

Primer 2 – 2 µl

Immomix red 2x – 25 µl

Water - 20 µl


PCR setup:

95 °C for 10 minutes

95 °C for 10s, 55 °C for 30s, 72 °C for 30s – X 25

Hold temp. 4 °C


**Friday 7.9.12**


Ran gel from previous PCR – wbbC worked (although significant blurring – fewer PCR steps may have helped.)

Gibson PCR of Pbad, wbnJ and wbnK 2 using immomix red again

Volumes as on 6.9.12


PCR setup:

95 °C for 10 minutes

95 °C for 10s, 65 °C for 30s, 72 °C for 30s – X 5

4 °C hold step


Ran gel – no success