Team:Exeter/lab book/gibs/wk9
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- | <!-- | + | <!<p><b>**Monday 3.9.12**</b></p><br> |
+ | |||
+ | <p>Gibson PCR again</p><p> | ||
+ | Fragments and concentrations as 30.8.12</p><p> | ||
+ | <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/12" style="color:#1d1d1b"><u>3 step PCR</u></a></p><p> | ||
+ | <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/7" style="color:#1d1d1b"><u>Two step PCR</u></a></p><br><p> | ||
+ | PCR setup: </p><p> | ||
+ | 98 °C for 30s</p><p> | ||
+ | 98 °C for 10s, 69 °C for 30s, 72 °C for 20s – X 5</p><p> | ||
+ | 98 °C for 10s, 72 °C for 30s – X 25</p><p> | ||
+ | 72 °C for 10minutes</p><p> | ||
+ | Hold temp. 4 °C</p><br><p> | ||
+ | |||
+ | Ran gel – only <i>wfcA</i> 1 & 2 worked</p><br><p> | ||
+ | |||
+ | |||
+ | <b>**Tuesday 4.9.12**<b></p><br><p> | ||
+ | Mega-miniprep day: Due to various iGEM commitments, an overwhelming number of minipreps was required. LB broth was inoculated 3.9.12 - Four colonies from each plate from all transformations from 21.08.12 onwards were put in broth and miniprepped (see Freddie’s lab book for 3 gene inducible plasmid for details) </p><p> | ||
+ | <p>Miniprep according to<ahref="http://www.fermentas.com/templates/files/tiny_mce/coa_pdf/coa_k0502.pdf" style="color:#57B947" target="_blank"><u>Fermentas protocol</u></a></p> | ||
+ | |||
+ | <p><b>**Wednesday 5.9.12**</b></p><br><p> | ||
+ | Used nanodrop spectrophotometer to find concentrations from minipreps the previous day</p><br><p> | ||
+ | |||
+ | Gibson PCR of Pbad, <i>wbnJ</i>, <i>wbbC</i> and <i>wbnK</i> 2. </p><p> | ||
+ | DNA 1 µl, water 33 µl</p><p> | ||
+ | |||
+ | |||
+ | <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/12" style="color:#1d1d1b"><u>3 step PCR</u></a></p><p> | ||
+ | <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/7" style="color:#1d1d1b"><u>2 step PCR</u></a></p><br><p> | ||
+ | PCR setup: </p><p> | ||
+ | 98 °C for 30s</p><p> | ||
+ | 98 °C for 10s, 50 °C for 30s, 72 °C for 20s – X 5</p><p> | ||
+ | 98 °C for 10s, 72 °C for 30s – X 25</p><p> | ||
+ | 72 °C for 10 minutes</p><p> | ||
+ | Hold temp. 4 °C</p><br><p> | ||
+ | |||
+ | Gel run – no success</p><br><p> | ||
+ | |||
+ | |||
+ | <b>**Thursday 6.9.12**</b></p><br><p> | ||
+ | Gibson PCR using Immomix red (2x). Pbad, <i>wbnJ</i>, <i>wbbC</i>, <i>wbnK</i> 2. </p><p> | ||
+ | Immomix red 25 µl</p><p> | ||
+ | DNA 1 µl</p><p> | ||
+ | Primer 1 – 2 µl</p><p> | ||
+ | Primer 2 – 2 µl</p><p> | ||
+ | Immomix red 2x – 25 µl</p><p> | ||
+ | Water - 20 µl</p><br><p> | ||
+ | |||
+ | PCR setup: </p><p> | ||
+ | 95 °C for 10 minutes</p><p> | ||
+ | 95 °C for 10s, 55 °C for 30s, 72 °C for 30s – X 25</p><p> | ||
+ | Hold temp. 4 °C</p><br><p> | ||
+ | |||
+ | <b>**Friday 7.9.12**<b></p><br><p> | ||
+ | Ran gel from previous PCR – <i>wbbC</i> worked (although significant blurring – fewer PCR steps may have helped.) </p><p> | ||
+ | Gibson PCR of Pbad, <i>wbnJ</i> and <i>wbnK</i> 2 using immomix red again</p><p> | ||
+ | Volumes as on 6.9.12</p><br><p> | ||
+ | |||
+ | PCR setup: </p><p> | ||
+ | 95 °C for 10 minutes</p><p> | ||
+ | 95 °C for 10s, 65 °C for 30s, 72 °C for 30s – X 5</p><p> | ||
+ | 4 °C hold step</p><br><p> | ||
+ | |||
+ | Ran gel – no success</p> | ||
+ | |||
</font> | </font> |
Revision as of 17:38, 25 September 2012
Operon Construction: 3rd - 7th September 2012 **Monday 3.9.12**Gibson PCR again Fragments and concentrations as 30.8.12 PCR setup: 98 °C for 30s 98 °C for 10s, 69 °C for 30s, 72 °C for 20s – X 5 98 °C for 10s, 72 °C for 30s – X 25 72 °C for 10minutes Hold temp. 4 °C Ran gel – only wfcA 1 & 2 worked **Tuesday 4.9.12** Mega-miniprep day: Due to various iGEM commitments, an overwhelming number of minipreps was required. LB broth was inoculated 3.9.12 - Four colonies from each plate from all transformations from 21.08.12 onwards were put in broth and miniprepped (see Freddie’s lab book for 3 gene inducible plasmid for details)
Miniprep according to **Wednesday 5.9.12** Used nanodrop spectrophotometer to find concentrations from minipreps the previous day Gibson PCR of Pbad, wbnJ, wbbC and wbnK 2. DNA 1 µl, water 33 µl PCR setup: 98 °C for 30s 98 °C for 10s, 50 °C for 30s, 72 °C for 20s – X 5 98 °C for 10s, 72 °C for 30s – X 25 72 °C for 10 minutes Hold temp. 4 °C Gel run – no success **Thursday 6.9.12** Gibson PCR using Immomix red (2x). Pbad, wbnJ, wbbC, wbnK 2. Immomix red 25 µl DNA 1 µl Primer 1 – 2 µl Primer 2 – 2 µl Immomix red 2x – 25 µl Water - 20 µl PCR setup: 95 °C for 10 minutes 95 °C for 10s, 55 °C for 30s, 72 °C for 30s – X 25 Hold temp. 4 °C **Friday 7.9.12** Ran gel from previous PCR – wbbC worked (although significant blurring – fewer PCR steps may have helped.) Gibson PCR of Pbad, wbnJ and wbnK 2 using immomix red again Volumes as on 6.9.12 PCR setup: 95 °C for 10 minutes 95 °C for 10s, 65 °C for 30s, 72 °C for 30s – X 5 4 °C hold step Ran gel – no success |