Team:Tianjin/Modeling

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<p class="menu_head">Modeling Contents</p>
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<a href="https://2012.igem.org/Team:Tianjin/Modeling/Expression">Protein Expression</a>
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<a href="https://2012.igem.org/Team:Tianjin/Modeling/HGTBass">HGTBass</a>
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<a href="https://2012.igem.org/Team:Tianjin/Modeling/Propagation">Propagation</a>
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<a href="https://2012.igem.org/Team:Tianjin/Modeling/Human">Human</a>
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<a href="https://2012.igem.org/Team:Tianjin/Modeling/Calculation">Calculation</a>
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<a href="#Background">Background</a>
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<a href="#Modeling_Objective">Modeling Objective</a>
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<a href="#Model_Description_and_Design">Model Description and Design</a>
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<a href="#Verification_of_the_orthogonality">Verification of the orthogonality</a>
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<a href="#Modeling_Based_on_Wet_Lab_and_its_Results">Modeling Based on Wet Lab and its Results</a>
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<a href="#">Link-2</a>
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<br><center><span style="font-size:46px;font-family:Cambria;margin-top:10px">Protein Expression Prediction</span></center>
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=Background=
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Within our chassis bacteria, the protein expression system is special because there are two channels to express the protein: the canonical channel exists within any wild type bacteria and the orthogonal channel created artificially with the help of orthogonal ribosomes and orthogonal mRNA whose protein expression is relatively independent of the canonical ones. There are two kinds of ribosome and mRNA: host ribosome (also known as normal ribosome, canonical ribosome or n-ribosome) orthogonal-ribosome (o-ribosome), normal-mRNA (n-mRNA) with canonical RBS sequence and orthogonal mRNA (o-mRNA) with mutated RBS sequence. The canonical mRNA can be translated with the help of canonical ribosome. On the other hand, o-ribosomes can also translate genes with altered Shine-Dalgarno (SD) sequences not recognized by host ribosomes.
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Revision as of 18:04, 24 September 2012


Protein Expression Prediction


Background

Within our chassis bacteria, the protein expression system is special because there are two channels to express the protein: the canonical channel exists within any wild type bacteria and the orthogonal channel created artificially with the help of orthogonal ribosomes and orthogonal mRNA whose protein expression is relatively independent of the canonical ones. There are two kinds of ribosome and mRNA: host ribosome (also known as normal ribosome, canonical ribosome or n-ribosome) orthogonal-ribosome (o-ribosome), normal-mRNA (n-mRNA) with canonical RBS sequence and orthogonal mRNA (o-mRNA) with mutated RBS sequence. The canonical mRNA can be translated with the help of canonical ribosome. On the other hand, o-ribosomes can also translate genes with altered Shine-Dalgarno (SD) sequences not recognized by host ribosomes.

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