Team:Amsterdam/shadow/test

From 2012.igem.org

Revision as of 03:42, 19 June 2012

{ script: "var Vcells=getInput('Vcells'),\

            Vtotal=getInput('Vtotal');\
        var Vsolution = Vtotal - Vcells;\
        var c = arsenicModelConstants();\
        c.Vc = Vcells*1e-3;\
        c.Vs = Vsolution*1e-3;\
        c.AsT = c.Vs*getInput('As3exInitial')*1e-6;\
        c.v5 = getInput('v5')*1e-6;\
        c.K5 = getInput('K5')*1e-6;\
        c.ars2T = 0;\
        c.pro = 0;\
        c.beta4 = 0;\
        var data = simulate(arsenicModelInitialization(c),3600,function(t,x){return arsenicModelGradient(c,x);});\
        var d=[{title:'As(III)exT',data:[],args:{plot:'outer',Team:Groningen/Styles/As(III)ex}},\
               {title:'As(III)inT',data:[],args:{plot:'inner',Team:Groningen/Styles/As(III)}}];\
        var t = Number.NEGATIVE_INFINITY;\
        for(var i=0; i<data.time.length; i++) {\
          var f=data.time[i]/60;\
          if (f>=t+0.1) {\
            t = t+0.1;\
            d[0].data.push({x:f,y:data.AsexT[i]*1e6});\
            d[1].data.push({x:f,y:data.AsinT[i]*1e6});\
          }\
        }\
        d.push({title:'As(III)exT Meng2004',\
                data:[{x:1,y:8.47076050151002}, {x:10,y:6.51596961654617}, {x:20,y:4.3195753637778},\
                      {x:40,y:1.72783014551112}, {x:60,y:0.9371282145145}],\
                args:{plot: 'outer', Team:Groningen/Styles/As(III)ex}});\
        d.push({title:'As(III)inT Meng2004',\
                data:[{x:1,y:101.917808219178}, {x:10,y:394.520547945205}, {x:20,y:723.287671232877},\
                      {x:40,y:1111.23287671233}, {x:60,y:1229.58904109589}],\
                args:{plot: 'inner', Team:Groningen/Styles/As(III)}});\
        for(j=2; j<d.length; j++) d[j].args.stroke.style = 'Dash';\
        d;",

width: '10cm', height: '8cm', axes: {x: {title: "time (min)", minorLabels: false}, innery: {title: "concentration in cell (µM)", vertical: true, min: 0}, outery: {title: "concentration in solution (µM)", vertical: true, leftBottom: false, min: 0} }, plots: { 'inner': {type: 'Lines', vAxis: 'innery'}, 'outer': {type: 'Lines', vAxis: 'outery'} } }