Team:SYSU-Software/v2

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<h3>Huimin Xin</h3>
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<p>In charge of art design for the team, including all logos and color scheme for the soft-ware as well as drawing and providing images for wiki; T-shirts for the team and poster and anything that you think a vision supervisor for IGEM team that should do.  
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<h3>Huimin Xin</h3>
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<p>In charge of art design for the team, including all logos and color scheme for the soft-ware as well as drawing and providing images for wiki; T-shirts for the team and poster and anything that you think a vision supervisor for IGEM team that should do.
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          <li><a href="https://2012.igem.org/Team:SYSU-Software/Project" >Project<span>Start here</span></a></li>
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          <li><a href="#">Team<span>Let us show you our work</span></a></li>
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          <li><a href="#">Safety<span>Get to know us a little better</span></a></li>
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                <p>With this Genome Browser, users are able to search Biobricks, plasmids and genomes of model microorganisms; at the same time, gene annotations and information of GenBank are presented. The primary protein sequence is also presented according to the DNA sequences. Aside from searching sequences, users can also input or modify the sequences, insert annotation and build target plasmids they need.</p>
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                <p>This part of the software focus on the design of regulatory elements of metabolic networks, mainly non-coding RNAs including SiRNA and Riboswitch. When a certain gene or protein is given, the Designer would generate the elements. What’s more, the primary and secondary structure can be predicted and presented in the Designer. The function of structure prediction can be also applied in other non-coding RNAs, for instance, microRNAs.</p>
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                <p>Relying on the KEGG Pathway database, the Illustrator exports the optimized relevant pathway map of a gene or transcription factor the user interests in.  </p>
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                                    <div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div>
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              <p>Simulator is a tool to analyze target metabolic network in method of flux balance analysis (FBA). The Simulator would help researchers rebuild the metabolic network and search key genes in the network, in order to simplify the synthesis design. Relying on the KEGG Pathway database, a novel rFBA model is formed when regulation-relevant conditions are added into the primitive FBA model, which would help the researchers observe the dynamic change in the metabolic system. Moreover, unlike the mainstream of FBA, the analysis of the Simulator is not based on Matlab and is more convenient for researchers to use.</p>
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                            <p>Lorem ipsum dolor sit Amet consec tetuer adipiscing elit</p>
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                            <p>Our notebook shows you the schedule we developed this project.</p>
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                            <div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div>
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                      <h2>About us</h2>
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                      <p>We are from Sun Yet-Sen University，which is locate in southern China.
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Latest revision as of 12:06, 22 September 2012

Team:SYSU-Software

With this Genome Browser, users are able to search Biobricks, plasmids and genomes of model microorganisms; at the same time, gene annotations and information of GenBank are presented. The primary protein sequence is also presented according to the DNA sequences. Aside from searching sequences, users can also input or modify the sequences, insert annotation and build target plasmids they need.

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This part of the software focus on the design of regulatory elements of metabolic networks, mainly non-coding RNAs including SiRNA and Riboswitch. When a certain gene or protein is given, the Designer would generate the elements. What’s more, the primary and secondary structure can be predicted and presented in the Designer. The function of structure prediction can be also applied in other non-coding RNAs, for instance, microRNAs.

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Relying on the KEGG Pathway database, the Illustrator exports the optimized relevant pathway map of a gene or transcription factor the user interests in.

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Simulator is a tool to analyze target metabolic network in method of flux balance analysis (FBA). The Simulator would help researchers rebuild the metabolic network and search key genes in the network, in order to simplify the synthesis design. Relying on the KEGG Pathway database, a novel rFBA model is formed when regulation-relevant conditions are added into the primitive FBA model, which would help the researchers observe the dynamic change in the metabolic system. Moreover, unlike the mainstream of FBA, the analysis of the Simulator is not based on Matlab and is more convenient for researchers to use.

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Project

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Safety

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  • Our notebook shows you the schedule we developed this project.

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About us

We are from Sun Yet-Sen University，which is locate in southern China.

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