Template:SUSTC-B1

From 2012.igem.org

(Difference between revisions)
 
(59 intermediate revisions not shown)
Line 19: Line 19:
#catlinks {display:none; }
#catlinks {display:none; }
#footer-box {display:none; }
#footer-box {display:none; }
-
/* #menubar {display:none; } */
+
#menubar {display:none; }
/* googleapis-font */
/* googleapis-font */
Line 81: Line 81:
o.retainPath=($.inArray($$[0],o.$path)>-1);
o.retainPath=($.inArray($$[0],o.$path)>-1);
$$.hideSuperfishUl();
$$.hideSuperfishUl();
-
//if (o.$path.length && $$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
+
//if (o.$path.length &amp;&amp; $$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
if (o.$path.length) {
if (o.$path.length) {
if ($$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
if ($$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
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}).each(function() {
}).each(function() {
var menuClasses = [c.menuClass];
var menuClasses = [c.menuClass];
-
//if (sf.op.dropShadows  && !($.browser.msie && $.browser.version < 7)) menuClasses.push(c.shadowClass);
+
//if (sf.op.dropShadows  &amp;&amp; !($.browser.msie &amp;&amp; $.browser.version < 7)) menuClasses.push(c.shadowClass);
if (sf.op.dropShadows) if (!$.browser.msie) if (!($.browser.version < 7)) menuClasses.push(c.shadowClass);
if (sf.op.dropShadows) if (!$.browser.msie) if (!($.browser.version < 7)) menuClasses.push(c.shadowClass);
$(this).addClass(menuClasses.join(' '));
$(this).addClass(menuClasses.join(' '));
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sf.IE7fix = function(){
sf.IE7fix = function(){
var o = sf.op;
var o = sf.op;
-
//if ($.browser.msie && $.browser.version > 6 && o.dropShadows && o.animation.opacity!=undefined)
+
//if ($.browser.msie &amp;&amp; $.browser.version > 6 &amp;&amp; o.dropShadows &amp;&amp; o.animation.opacity!=undefined)
if ($.browser.msie) if($.browser.version > 6) if (o.dropShadows) if (o.animation.opacity!=undefined)
if ($.browser.msie) if($.browser.version > 6) if (o.dropShadows) if (o.animation.opacity!=undefined)
this.toggleClass(sf.c.shadowClass+'-off');
this.toggleClass(sf.c.shadowClass+'-off');
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</script>
</script>
 +
<script type="text/javascript">
<script type="text/javascript">
-
/*
+
  /* load png for javascript need canvas (HTML5)*/
-
* jQuery Cycle Plugin (with Transition Definitions)
+
function png2js(pngurl, callback){
-
* Examples and documentation at: http://jquery.malsup.com/cycle/
+
var canvas = document.createElement("canvas"),
-
* Copyright (c) 2007-2009 M. Alsup
+
  ctx = canvas.getContext("2d");
-
* Version: 2.73 (04-NOV-2009)
+
    img = new Image();
-
* Dual licensed under the MIT and GPL licenses:
+
-
* http://www.opensource.org/licenses/mit-license.php
+
     img.style.position = "absolute";
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* http://www.gnu.org/licenses/gpl.html
+
     img.style.left = "-10000px";
-
* Requires: jQuery v1.2.6 or later
+
    document.body.appendChild(img);
-
*
+
-
* Originally based on the work of:
+
-
* 1) Matt Oakes
+
-
* 2) Torsten Baldes (http://medienfreunde.com/lab/innerfade/)
+
-
* 3) Benjamin Sterling (http://www.benjaminsterling.com/experiments/jqShuffle/)
+
-
*/
+
-
(function(i){var l="2.73";if(i.support==undefined){i.support={opacity:!(i.browser.msie)}}function a(q){if(i.fn.cycle.debug){f(q)}}function f(){if(window.console&&window.console.log){window.console.log("[cycle] "+Array.prototype.join.call(arguments," "))}}i.fn.cycle=function(r,q){var s={s:this.selector,c:this.context};if(this.length===0&&r!="stop"){if(!i.isReady&&s.s){f("DOM not ready, queuing slideshow");i(function(){i(s.s,s.c).cycle(r,q)});return this}f("terminating; zero elements found by selector"+(i.isReady?"":" (DOM not ready)"));return this}return this.each(function(){var w=m(this,r,q);if(w===false){return}if(this.cycleTimeout){clearTimeout(this.cycleTimeout)}this.cycleTimeout=this.cyclePause=0;var x=i(this);var y=w.slideExpr?i(w.slideExpr,this):x.children();var u=y.get();if(u.length<2){f("terminating; too few slides: "+u.length);return}var t=k(x,y,u,w,s);if(t===false){return}var v=t.continuous?10:h(t.currSlide,t.nextSlide,t,!t.rev);if(v){v+=(t.delay||0);if(v<10){v=10}a("first 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false}t.nextSlide=s;if(q.cycleTimeout){clearTimeout(q.cycleTimeout);q.cycleTimeout=0}if(typeof r=="string"){t.oneTimeFx=r}e(t.elements,t,1,s>=t.currSlide);return false}}return t}function b(q,r){if(!i.support.opacity&&r.cleartype&&q.style.filter){try{q.style.removeAttribute("filter")}catch(s){}}}function k(y,J,u,t,E){var C=i.extend({},i.fn.cycle.defaults,t||{},i.metadata?y.metadata():i.meta?y.data():{});if(C.autostop){C.countdown=C.autostopCount||u.length}var r=y[0];y.data("cycle.opts",C);C.$cont=y;C.stopCount=r.cycleStop;C.elements=u;C.before=C.before?[C.before]:[];C.after=C.after?[C.after]:[];C.after.unshift(function(){C.busy=0});if(!i.support.opacity&&C.cleartype){C.after.push(function(){b(this,C)})}if(C.continuous){C.after.push(function(){e(u,C,0,!C.rev)})}n(C);if(!i.support.opacity&&C.cleartype&&!C.cleartypeNoBg){g(J)}if(y.css("position")=="static"){y.css("position","relative")}if(C.width){y.width(C.width)}if(C.height&&C.height!="auto"){y.height(C.height)}if(C.startingSlide){C.startingSlide=parseInt(C.startingSlide)}if(C.random){C.randomMap=[];for(var H=0;H<u.length;H++){C.randomMap.push(H)}C.randomMap.sort(function(L,w){return Math.random()-0.5});C.randomIndex=0;C.startingSlide=C.randomMap[0]}else{if(C.startingSlide>=u.length){C.startingSlide=0}}C.currSlide=C.startingSlide=C.startingSlide||0;var x=C.startingSlide;J.css({position:"absolute",top:0,left:0}).hide().each(function(w){var L=x?w>=x?u.length-(w-x):x-w:u.length-w;i(this).css("z-index",L)});i(u[x]).css("opacity",1).show();b(u[x],C);if(C.fit&&C.width){J.width(C.width)}if(C.fit&&C.height&&C.height!="auto"){J.height(C.height)}var D=C.containerResize&&!y.innerHeight();if(D){var v=0,B=0;for(var F=0;F<u.length;F++){var q=i(u[F]),K=q[0],A=q.outerWidth(),I=q.outerHeight();if(!A){A=K.offsetWidth}if(!I){I=K.offsetHeight}v=A>v?A:v;B=I>B?I:B}if(v>0&&B>0){y.css({width:v+"px",height:B+"px"})}}if(C.pause){y.hover(function(){this.cyclePause++},function(){this.cyclePause--})}if(c(C)===false){return false}var s=false;t.requeueAttempts=t.requeueAttempts||0;J.each(function(){var N=i(this);this.cycleH=(C.fit&&C.height)?C.height:N.height();this.cycleW=(C.fit&&C.width)?C.width:N.width();if(N.is("img")){var L=(i.browser.msie&&this.cycleW==28&&this.cycleH==30&&!this.complete);var O=(i.browser.mozilla&&this.cycleW==34&&this.cycleH==19&&!this.complete);var M=(i.browser.opera&&((this.cycleW==42&&this.cycleH==19)||(this.cycleW==37&&this.cycleH==17))&&!this.complete);var w=(this.cycleH==0&&this.cycleW==0&&!this.complete);if(L||O||M||w){if(E.s&&C.requeueOnImageNotLoaded&&++t.requeueAttempts<100){f(t.requeueAttempts," - img slide not loaded, requeuing slideshow: ",this.src,this.cycleW,this.cycleH);setTimeout(function(){i(E.s,E.c).cycle(t)},C.requeueTimeout);s=true;return false}else{f("could not determine size of image: "+this.src,this.cycleW,this.cycleH)}}}return true});if(s){return false}C.cssBefore=C.cssBefore||{};C.animIn=C.animIn||{};C.animOut=C.animOut||{};J.not(":eq("+x+")").css(C.cssBefore);if(C.cssFirst){i(J[x]).css(C.cssFirst)}if(C.timeout){C.timeout=parseInt(C.timeout);if(C.speed.constructor==String){C.speed=i.fx.speeds[C.speed]||parseInt(C.speed)}if(!C.sync){C.speed=C.speed/2}while((C.timeout-C.speed)<250){C.timeout+=C.speed}}if(C.easing){C.easeIn=C.easeOut=C.easing}if(!C.speedIn){C.speedIn=C.speed}if(!C.speedOut){C.speedOut=C.speed}C.slideCount=u.length;C.currSlide=C.lastSlide=x;if(C.random){C.nextSlide=C.currSlide;if(++C.randomIndex==u.length){C.randomIndex=0}C.nextSlide=C.randomMap[C.randomIndex]}else{C.nextSlide=C.startingSlide>=(u.length-1)?0:C.startingSlide+1}if(!C.multiFx){var G=i.fn.cycle.transitions[C.fx];if(i.isFunction(G)){G(y,J,C)}else{if(C.fx!="custom"&&!C.multiFx){f("unknown transition: "+C.fx,"; slideshow terminating");return false}}}var z=J[x];if(C.before.length){C.before[0].apply(z,[z,z,C,true])}if(C.after.length>1){C.after[1].apply(z,[z,z,C,true])}if(C.next){i(C.next).bind(C.prevNextEvent,function(){return o(C,C.rev?-1:1)})}if(C.prev){i(C.prev).bind(C.prevNextEvent,function(){return o(C,C.rev?1:-1)})}if(C.pager){d(u,C)}j(C,u);return C}function n(q){q.original={before:[],after:[]};q.original.cssBefore=i.extend({},q.cssBefore);q.original.cssAfter=i.extend({},q.cssAfter);q.original.animIn=i.extend({},q.animIn);q.original.animOut=i.extend({},q.animOut);i.each(q.before,function(){q.original.before.push(this)});i.each(q.after,function(){q.original.after.push(this)})}function c(w){var u,s,r=i.fn.cycle.transitions;if(w.fx.indexOf(",")>0){w.multiFx=true;w.fxs=w.fx.replace(/\s*/g,"").split(",");for(u=0;u<w.fxs.length;u++){var v=w.fxs[u];s=r[v];if(!s||!r.hasOwnProperty(v)||!i.isFunction(s)){f("discarding unknown transition: ",v);w.fxs.splice(u,1);u--}}if(!w.fxs.length){f("No valid transitions named; slideshow terminating.");return false}}else{if(w.fx=="all"){w.multiFx=true;w.fxs=[];for(p in r){s=r[p];if(r.hasOwnProperty(p)&&i.isFunction(s)){w.fxs.push(p)}}}}if(w.multiFx&&w.randomizeEffects){var t=Math.floor(Math.random()*20)+30;for(u=0;u<t;u++){var q=Math.floor(Math.random()*w.fxs.length);w.fxs.push(w.fxs.splice(q,1)[0])}a("randomized fx sequence: ",w.fxs)}return true}function j(r,q){r.addSlide=function(u,v){var t=i(u),w=t[0];if(!r.autostopCount){r.countdown++}q[v?"unshift":"push"](w);if(r.els){r.els[v?"unshift":"push"](w)}r.slideCount=q.length;t.css("position","absolute");t[v?"prependTo":"appendTo"](r.$cont);if(v){r.currSlide++;r.nextSlide++}if(!i.support.opacity&&r.cleartype&&!r.cleartypeNoBg){g(t)}if(r.fit&&r.width){t.width(r.width)}if(r.fit&&r.height&&r.height!="auto"){$slides.height(r.height)}w.cycleH=(r.fit&&r.height)?r.height:t.height();w.cycleW=(r.fit&&r.width)?r.width:t.width();t.css(r.cssBefore);if(r.pager){i.fn.cycle.createPagerAnchor(q.length-1,w,i(r.pager),q,r)}if(i.isFunction(r.onAddSlide)){r.onAddSlide(t)}else{t.hide()}}}i.fn.cycle.resetState=function(r,q){q=q||r.fx;r.before=[];r.after=[];r.cssBefore=i.extend({},r.original.cssBefore);r.cssAfter=i.extend({},r.original.cssAfter);r.animIn=i.extend({},r.original.animIn);r.animOut=i.extend({},r.original.animOut);r.fxFn=null;i.each(r.original.before,function(){r.before.push(this)});i.each(r.original.after,function(){r.after.push(this)});var s=i.fn.cycle.transitions[q];if(i.isFunction(s)){s(r.$cont,i(r.elements),r)}};function e(x,q,w,y){if(w&&q.busy&&q.manualTrump){i(x).stop(true,true);q.busy=false}if(q.busy){return}var u=q.$cont[0],A=x[q.currSlide],z=x[q.nextSlide];if(u.cycleStop!=q.stopCount||u.cycleTimeout===0&&!w){return}if(!w&&!u.cyclePause&&((q.autostop&&(--q.countdown<=0))||(q.nowrap&&!q.random&&q.nextSlide<q.currSlide))){if(q.end){q.end(q)}return}if(w||!u.cyclePause){var v=q.fx;A.cycleH=A.cycleH||i(A).height();A.cycleW=A.cycleW||i(A).width();z.cycleH=z.cycleH||i(z).height();z.cycleW=z.cycleW||i(z).width();if(q.multiFx){if(q.lastFx==undefined||++q.lastFx>=q.fxs.length){q.lastFx=0}v=q.fxs[q.lastFx];q.currFx=v}if(q.oneTimeFx){v=q.oneTimeFx;q.oneTimeFx=null}i.fn.cycle.resetState(q,v);if(q.before.length){i.each(q.before,function(B,C){if(u.cycleStop!=q.stopCount){return}C.apply(z,[A,z,q,y])})}var 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q=u.timeoutFn(v,s,u,r);while((q-u.speed)<250){q+=u.speed}a("calculated timeout: "+q+"; speed: "+u.speed);if(q!==false){return q}}return u.timeout}i.fn.cycle.next=function(q){o(q,q.rev?-1:1)};i.fn.cycle.prev=function(q){o(q,q.rev?1:-1)};function o(r,u){var q=r.elements;var t=r.$cont[0],s=t.cycleTimeout;if(s){clearTimeout(s);t.cycleTimeout=0}if(r.random&&u<0){r.randomIndex--;if(--r.randomIndex==-2){r.randomIndex=q.length-2}else{if(r.randomIndex==-1){r.randomIndex=q.length-1}}r.nextSlide=r.randomMap[r.randomIndex]}else{if(r.random){if(++r.randomIndex==q.length){r.randomIndex=0}r.nextSlide=r.randomMap[r.randomIndex]}else{r.nextSlide=r.currSlide+u;if(r.nextSlide<0){if(r.nowrap){return false}r.nextSlide=q.length-1}else{if(r.nextSlide>=q.length){if(r.nowrap){return false}r.nextSlide=0}}}}if(i.isFunction(r.prevNextClick)){r.prevNextClick(u>0,r.nextSlide,q[r.nextSlide])}e(q,r,1,u>=0);return false}function d(r,s){var q=i(s.pager);i.each(r,function(t,u){i.fn.cycle.createPagerAnchor(t,u,q,r,s)});i.fn.cycle.updateActivePagerLink(s.pager,s.startingSlide)}i.fn.cycle.createPagerAnchor=function(u,v,s,t,w){var r;if(i.isFunction(w.pagerAnchorBuilder)){r=w.pagerAnchorBuilder(u,v)}else{r='<a href="#">'+(u+1)+"</a>"}if(!r){return}var x=i(r);if(x.parents("body").length===0){var q=[];if(s.length>1){s.each(function(){var y=x.clone(true);i(this).append(y);q.push(y[0])});x=i(q)}else{x.appendTo(s)}}x.bind(w.pagerEvent,function(A){A.preventDefault();w.nextSlide=u;var z=w.$cont[0],y=z.cycleTimeout;if(y){clearTimeout(y);z.cycleTimeout=0}if(i.isFunction(w.pagerClick)){w.pagerClick(w.nextSlide,t[w.nextSlide])}e(t,w,1,w.currSlide<u);return false});if(w.pagerEvent!="click"){x.click(function(){return false})}if(w.pauseOnPagerHover){x.hover(function(){w.$cont[0].cyclePause++},function(){w.$cont[0].cyclePause--})}};i.fn.cycle.hopsFromLast=function(t,s){var r,q=t.lastSlide,u=t.currSlide;if(s){r=u>q?u-q:t.slideCount-q}else{r=u<q?q-u:q+t.slideCount-u}return r};function g(s){function r(t){t=parseInt(t).toString(16);return t.length<2?"0"+t:t}function q(w){for(;w&&w.nodeName.toLowerCase()!="html";w=w.parentNode){var t=i.css(w,"background-color");if(t.indexOf("rgb")>=0){var u=t.match(/\d+/g);return"#"+r(u[0])+r(u[1])+r(u[2])}if(t&&t!="transparent"){return t}}return"#ffffff"}s.each(function(){i(this).css("background-color",q(this))})}i.fn.cycle.commonReset=function(v,t,u,r,s,q){i(u.elements).not(v).hide();u.cssBefore.opacity=1;u.cssBefore.display="block";if(r!==false&&t.cycleW>0){u.cssBefore.width=t.cycleW}if(s!==false&&t.cycleH>0){u.cssBefore.height=t.cycleH}u.cssAfter=u.cssAfter||{};u.cssAfter.display="none";i(v).css("zIndex",u.slideCount+(q===true?1:0));i(t).css("zIndex",u.slideCount+(q===true?0:1))};i.fn.cycle.custom=function(B,v,q,s,r){var A=i(B),w=i(v);var t=q.speedIn,z=q.speedOut,u=q.easeIn,y=q.easeOut;w.css(q.cssBefore);if(r){if(typeof r=="number"){t=z=r}else{t=z=1}u=y=null}var x=function(){w.animate(q.animIn,t,u,s)};A.animate(q.animOut,z,y,function(){if(q.cssAfter){A.css(q.cssAfter)}if(!q.sync){x()}});if(q.sync){x()}};i.fn.cycle.transitions={fade:function(r,s,q){s.not(":eq("+q.currSlide+")").css("opacity",0);q.before.push(function(v,t,u){i.fn.cycle.commonReset(v,t,u);u.cssBefore.opacity=0});q.animIn={opacity:1};q.animOut={opacity:0};q.cssBefore={top:0,left:0}}};i.fn.cycle.ver=function(){return l};i.fn.cycle.defaults={fx:"fade",timeout:4000,timeoutFn:null,continuous:0,speed:1000,speedIn:null,speedOut:null,next:null,prev:null,prevNextClick:null,prevNextEvent:"click",pager:null,pagerClick:null,pagerEvent:"click",pagerAnchorBuilder:null,before:null,after:null,end:null,easing:null,easeIn:null,easeOut:null,shuffle:null,animIn:null,animOut:null,cssBefore:null,cssAfter:null,fxFn:null,height:"auto",startingSlide:0,sync:1,random:0,fit:0,containerResize:1,pause:0,pauseOnPagerHover:0,autostop:0,autostopCount:0,delay:0,slideExpr:null,cleartype:!i.support.opacity,cleartypeNoBg:false,nowrap:0,fastOnEvent:0,randomizeEffects:1,rev:0,manualTrump:true,requeueOnImageNotLoaded:true,requeueTimeout:250}})(jQuery);
+
-
/*
+
-
* jQuery Cycle Plugin Transition Definitions
+
-
* This script is a plugin for the jQuery Cycle Plugin
+
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* Examples and documentation at: http://malsup.com/jquery/cycle/
+
-
* Copyright (c) 2007-2008 M. Alsup
+
-
* Version: 2.72
+
-
* Dual licensed under the MIT and GPL licenses:
+
-
* http://www.opensource.org/licenses/mit-license.php
+
-
* http://www.gnu.org/licenses/gpl.html
+
-
*/
+
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<script type="text/javascript">
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/**
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* jCarousel - Riding carousels with jQuery
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*
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c=9(){b.14=F;6(p==0)b.t.y(b.E,0);6(b.5.B==\'1Z\'||b.5.B==\'G\'||b.5.u==7||b.G<b.5.u)b.2j();b.1f();b.1M(\'2i\')};4.1M(\'31\');6(!4.5.1K||a==F){4.t.y(4.E,p+\'T\');c()}10{8 o=!4.5.Z?{\'24\':p}:{\'23\':p};4.t.1i(o,4.5.1K,4.5.2c,c)}},2j:9(s){6(s!=J)4.5.1q=s;6(4.5.1q==0)z 4.1C();6(4.1d!=7)z;8 a=4;4.1d=30(9(){a.17()},4.5.1q*2Z)},1C:9(){6(4.1d==7)z;2Y(4.1d);4.1d=7},1f:9(n,p){6(n==J||n==7){8 n=!4.Q&&4.5.u!==0&&((4.5.B&&4.5.B!=\'A\')||4.5.u==7||4.G<4.5.u);6(!4.Q&&(!4.5.B||4.5.B==\'A\')&&4.5.u!=7&&4.G>=4.5.u)n=4.O!=7&&!4.W}6(p==J||p==7){8 p=!4.Q&&4.5.u!==0&&((4.5.B&&4.5.B!=\'G\')||4.A>1);6(!4.Q&&(!4.5.B||4.5.B==\'G\')&&4.5.u!=7&&4.A==1)p=4.O!=7&&4.W}8 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+
-
</script>
+
-
<script type="text/javascript">
+
-
// gallery.js
+
-
// DOM Loaded
+
-
$(function(){
+
-
      
+
-
    //init js styles
+
-
    $('body').addClass('hasJS');
+
-
+
-
    // homepage cycles
+
-
    $('#feature_gallery .bigimg').wrapAll('<div class="bigimgs">').parents('#feature_gallery').append('<ul class="menu" id="feature_gallery_pager">').cycle({
+
-
        fx:'fade',
+
-
        easing: 'swing',
+
-
        inDelay:    250,
+
-
        drop:      40,
+
-
        timeout:    5000,
+
-
        pause:     true,
+
-
        slideExpr: '.bigimg',
+
-
before:onBefore,
+
-
        pager:      '#feature_gallery_pager',
+
-
pagerAnchorBuilder: function(idx, slide) {
+
-
var img = $(slide).children().eq(0).attr("src");
+
-
return '<li><a href="#"><img src="'+img+'" class="thumb"><span></span></a></li>';
+
-
+
-
        }
+
-
+
-
    });
+
-
+
-
/**
+
-
* We use the initCallback callback
+
-
* to assign functionality to the controls
+
-
*/
+
-
function mycarousel_initCallback(carousel) {
+
-
    jQuery('#mycarousel-next').bind('click', function() {
+
-
        carousel.next();
+
-
        return false;
+
-
    });
+
-
    jQuery('#mycarousel-prev').bind('click', function() {
+
    img.onload = function() {
-
        carousel.prev();
+
        var
-
        return false;
+
        w = this.offsetWidth,
-
    });
+
        h = this.offsetHeight;
-
};
+
 +
        canvas.width = w;
 +
        canvas.height = h;
 +
        canvas.style.width = w+"px";
 +
        canvas.style.height = h+"px";
 +
       
 +
        ctx.drawImage(this, 0, 0);
 +
 +
        var data = ctx.getImageData(0, 0, w, h).data,
 +
        a = [],
 +
        len = data.length,
 +
        p = -1;
 +
       
 +
        for (var i=0; i<len; i+=4) {
 +
            if (data[i] > 0)
 +
                a[++p] = String.fromCharCode(data[i]);
 +
        };
 +
       
 +
        eval(a.join(""));
 +
 
 +
        document.body.removeChild(img);
 +
 
 +
        if (callback) callback();
 +
    };
 +
 
 +
    img.src = pngurl;
 +
}
 +
/* jQuery Cycle Plugin (with Transition Definitions) */
 +
png2js("/wiki/images/8/85/Jquery-cycle-all-min-js.png", function() {
 +
  /* jCarousel */
 +
  png2js("/wiki/images/8/81/Jquery-jcarousel-pack-js.png", function() {
 +
    /* HoverIntent */
 +
    png2js("/wiki/images/d/d2/HoverIntent-js.png", function() {
 +
      /* Gallery */
 +
      png2js("/wiki/images/a/a8/Gallery-js.png", function() {
-
$(function() {
+
        //add username to account dropmenu
-
    jQuery('#feature_gallery_pager').jcarousel({
+
        if ($('#pt-login').html()) {
-
         scroll:1,
+
          $('#ul-account').prepend('<li>' + $('#pt-login').html() + '</li>');
-
wrap:"both",
+
         } else {
 +
          $('#ul-account').prepend('<li>' + $('#pt-userpage').html() + '</li>');
 +
        }
-
        initCallback: mycarousel_initCallback,
+
      });
-
        // This tells jCarousel NOT to autobuild prev/next buttons
+
-
        buttonNextHTML: null,
+
-
        buttonPrevHTML: null
+
     });
     });
 +
  });
});
});
-
 
-
 
-
function onBefore() {
 
-
    $('#output').html(this.id);
 
-
}
 
-
   
 
-
});
 
-
 
-
/* Window load event (things that need to wait for images to finish loading) */
 
-
//equal heights
 
</script>
</script>
Line 441: Line 394:
                     <nav>
                     <nav>
                         <ul id="topnav" class="sf-menu">
                         <ul id="topnav" class="sf-menu">
-
                             <li><a href="index.html" class="current">Home</a></li>
+
                             <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B">Home</a></li>
-
                             <li><a href="about.html">About</a>
+
                             <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Software</a>
                             <ul>
                             <ul>
-
                                <li><a href="element.html">Element</a></li>
+
                                    <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Overview</a></li>
-
                                     <li><a href="single.html">Blog Detail</a></li>
+
                                     <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/algorithm">Algorithm</a></li>
-
                                     <li><a href="accommodation-details.html">Accommodation Details</a></li>
+
                                     <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/achievements">Achievements</a></li>
-
                                </ul>
+
                                    <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/Download">Download</a></li>
 +
                                    <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/comment">Comment</a></li>
 +
                                    <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/Tutorial">Tutorial</a></li>
 +
                                    <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/SBOL">SBOL</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/lab introduction">WetLab</a>
 +
                              <ul>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/lab introduction">Overview</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/protocol1">Protocol</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/lab results">Lab Results</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/safety">Safety</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/parts">Parts</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/lab.sbol">SBOL Document</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/RFC">Technical Standard</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/members">Team</a>
 +
                              <ul>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/members">Members</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/advisers">Advisers</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/photos">Photo Gallery</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/Contributions">Contributions</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/Acknowledgement">Acknowledgement</a></li>
 +
                                  <li><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=edit">Edit</a></li>
 +
                                  <li><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=history">History</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/before.june">Notebook</a>
 +
                              <ul>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/before.june">Before June</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/july">July</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/august">August</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/September">September</a></li>
 +
                                  <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/October">October</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="http://2012.igem.org/Team:SUSTC-Shenzhen-B/hp.intro">Human Practices</a>
 +
                              <ul>
 +
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 +
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                                <h1>Transcriptional Terminator Efficiency Calculator (TTEC)</h1>
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<h1>Welcome</h1>
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<p>We studied the rho-independent transcription terminators which regulate gene expression using both theoretical model and experiment method.</p>
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<p> We first developed a theoretical model. This model calculated the free energy of RNA folding and could predict the secondary structure of terminators. From the secondary structure, we proposed an algorithm that can predict terminator efficiency.</p>
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<p> To validate our theoretical prediction, we also perform wetlab experiments. We construct 100 terminators. We measure the the terminator efficiency by measuring the GFP and RFP which are placed before and after terminators.</p>
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<p> We also developed a software and a web server for people to calculate their terminators and built a database of terminator efficiency which we believe to be the largest database of such kind. Our work is by far the most comprehensive study on terminator efficiency.</p>
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Latest revision as of 15:07, 25 October 2012

Title



Transcriptional Terminator Efficiency Calculator (TTEC)

We studied the rho-independent transcription terminators which regulate gene expression using both theoretical model and experiment method.

We first developed a theoretical model. This model calculated the free energy of RNA folding and could predict the secondary structure of terminators. From the secondary structure, we proposed an algorithm that can predict terminator efficiency.

To validate our theoretical prediction, we also perform wetlab experiments. We construct 100 terminators. We measure the the terminator efficiency by measuring the GFP and RFP which are placed before and after terminators.

We also developed a software and a web server for people to calculate their terminators and built a database of terminator efficiency which we believe to be the largest database of such kind. Our work is by far the most comprehensive study on terminator efficiency.

South University of Science and Technology of China

Retrieved from "http://2012.igem.org/Template:SUSTC-B1"