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Team:Wageningen UR/Journal/week21
From 2012.igem.org
Jjkoehorst (Talk | contribs) (→week 21: 17 September - 23 September) |
Jjkoehorst (Talk | contribs) (→week 21: 17 September - 23 September) |
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---- | ---- | ||
Frame shift in coil addition | Frame shift in coil addition | ||
| - | After | + | After receiving our samples from the sequencing, we saw that there was a frame shift in the sequence, leading to the faulty translation of the CCMV delta 25 coat protein, with an early stop codon. |
{| class="wikitable" style="text-align: center" | {| class="wikitable" style="text-align: center" | ||
|- style="font-style: bold" | |- style="font-style: bold" | ||
| | | | ||
| - | | | + | |Faulty |
| - | | | + | |Intended |
|- | |- | ||
|BP sequence | |BP sequence | ||
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CACTCCGGTGTAT</font> | CACTCCGGTGTAT</font> | ||
|- | |- | ||
| - | | | + | | Primer FW1 FL-Delta26 |
| <font face="courier new"> | | <font face="courier new"> | ||
TGGTGGTGGTTCTGGTGGTGGTGGTTCTGCTGCTGC | TGGTGGTGGTTCTGGTGGTGGTGGTTCTGCTGCTGC | ||
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|- | |- | ||
| - | | | + | | Translation product (AA) |
| <font face="courier new"> | | <font face="courier new"> | ||
MKIAALKEKIAALKEKIAALKELGGGSGGGGSAAAVWSNLLL</font> | MKIAALKEKIAALKEKIAALKELGGGSGGGGSAAAVWSNLLL</font> | ||
| Line 98: | Line 98: | ||
|} | |} | ||
| - | + | The new primer is ordered to still make this part available for the registry, but submission before the wiki deadline will not be possible anymore. however, we think that iGEM should not be the only reason to deliver bricks, and we intend to deliver all bricks that did not make it just in time, still after the iGEM deadlines. | |
---- | ---- | ||
[[https://2012.igem.org/Team:Wageningen_UR/Journal/week20 previous week]] | [[https://2012.igem.org/Team:Wageningen_UR/Journal/week20 previous week]] | ||
Revision as of 13:02, 24 September 2012
week 21: 17 September - 23 September
Hepatitis B inside modification
- Colony PCR of Hepatitis B core protein behing an IPTG promoter in pSB1C3 backbone with sequencing primers
-> the gel shows fragments of the expected size (about 1kb)
GFP modification
17 September
- ligation of the PCR products from 14 September (mixing the duplo samples together) with pJET and transformation with JM109
18 September
- colony PCR of the transformation from 17 September
CCMV coil addition
Frame shift in coil addition After receiving our samples from the sequencing, we saw that there was a frame shift in the sequence, leading to the faulty translation of the CCMV delta 25 coat protein, with an early stop codon.
| Faulty | Intended | |
| BP sequence |
GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAAGATAGCGG CGTTGAAGGAGAAAATCGCAGCACTAAAAGAAAAGATAGCG GCGTTGAAGGAGCTTGGTGGTGGTTCTGGTGGTGGTGGTTC TGCTGCTGCTGTGTGGTCCAACCTGTTATTGTAGAACCCAT CGCTTCAGGCCAAGGCAAGGCTATTAAAGCATGGACCGGTT ACAGCGTATCGAAGTGGACCGCCTCTTGTGCGGCTGCCGAA GCTAAAGTAACCTCGGCTATAACTATCTCTCTCCCTAATGA GCTATCGTCCGAAAGGAACAAGCAGCTCAAGGTAGGTAGAG TTTTATTATGGCTTGGGTTGCTTCCCAGTGTTAGTGGCACA GTGAAATCCTGTGTTACAGAGACGCAGACTACTGCTGCTGC CTCCTTTCAGGTGGCATTAGCTGTGGCCGACAACTCGAAAG ATGTTGTCGCTGCTATGTACCCCGAGGCGTTTAAGGGTATA ACCCTTGAACAACTCACCGCGGATTTAACGATCTACTTGTA CAGCAGTGCGGCTCTCACTGAGGGCGACGTCATCGTGCATT TGGAGGTTGAGCATGTCAGACCTACGTTTGACGACTCTTTC ACTCCGGTGTAT |
GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAAGATAGCGG CGTTGAAGGAGAAAATCGCAGCACTAAAAGAAAAGATAGCG GCGTTGAAGGAGCTTGGTGGTGGTTCTGGTGGTGGTGGTTC TGCTGCTGCTGGTGTGGTCCAACCTGTTATTGTAGAACCCA TCGCTTCAGGCCAAGGCAAGGCTATTAAAGCATGGACCGGT TACAGCGTATCGAAGTGGACCGCCTCTTGTGCGGCTGCCGA AGCTAAAGTAACCTCGGCTATAACTATCTCTCTCCCTAATG AGCTATCGTCCGAAAGGAACAAGCAGCTCAAGGTAGGTAGA GTTTTATTATGGCTTGGGTTGCTTCCCAGTGTTAGTGGCAC AGTGAAATCCTGTGTTACAGAGACGCAGACTACTGCTGCTG CCTCCTTTCAGGTGGCATTAGCTGTGGCCGACAACTCGAAA GATGTTGTCGCTGCTATGTACCCCGAGGCGTTTAAGGGTAT AACCCTTGAACAACTCACCGCGGATTTAACGATCTACTTGT ACAGCAGTGCGGCTCTCACTGAGGGCGACGTCATCGTGCAT TTGGAGGTTGAGCATGTCAGACCTACGTTTGACGACTCTTT CACTCCGGTGTAT |
| Primer FW1 FL-Delta26 |
TGGTGGTGGTTCTGGTGGTGGTGGTTCTGCTGCTGC TGTGTGGTCCAACCTGTTATTGTAG | TGGTGGTGGTTCTGGTGGTGGTGGTTCTGCTGCTGC
TGGTGTGGTCCAACCTGTTATTGTAG |
| Translation product (AA) |
MKIAALKEKIAALKEKIAALKELGGGSGGGGSAAAVWSNLLL |
MKIAALKEKIAALKEKIAALKELGGGSGGGGSAAAGVVQPVI VEPIASGQGKAIKAWTGYSVSKWTASCAAAEAKVTSAITISL PNELSSERNKQLKVGRVLLWLGLLPSVSGTVKSCVTETQTTA AASFQVALAVADNSKDVVAAMYPEAFKGITLEQLTADLTIYL YSSAALTEGDVIVHLEVEHVRPTFDDSFTPVY |
The new primer is ordered to still make this part available for the registry, but submission before the wiki deadline will not be possible anymore. however, we think that iGEM should not be the only reason to deliver bricks, and we intend to deliver all bricks that did not make it just in time, still after the iGEM deadlines.
