Team:Tuebingen/NotebookAppendix

From 2012.igem.org



Contents

Appendix

To complete this report we list all products and software used over the course of our project.

Constructs

backbone pRS#part #1part #2part #3
313Padh1mPR Danio rerioTadh1
313Padh1mPR Xenopus laevisTadh1
315Pfet3rox1Tadh1
315Pfet3mig1Tadh1
316Panb1lacZTadh1
316Panb1luciferaseTadh1
316Psuc2lacZTadh1
316Psuc2luciferaseTadh1

Chemicals

We needed the following chemicals:

  • Ampicillin
    beta-lactam antibiotic
  • Agarose
    Polysaccharide, major component of Agar
  • Dimethylsulfoxid (DMSO)
    organic solvent
  • Acetic Acid
  • Ethylenediaminetetraacetic acid (EDTA)
  • Ethanol
  • TRIS
    buffer solution for enzymes
  • Nucleoside triphosphate
  • Trypton
  • Isopropanol
  • Isopropyl-β-D-thiogalactopyranosid (IPTG)
  • LB-medium
    used for growth of E.coli
  • Agar-Agar

Software

The following list of software was used in the team:

  • [http://ugene.unipro.ru/ Unipro UGENE]
    UGENE is a free open-source cross-platform bioinformatics software. We used it to construct and annotate all needed sequences, search for restriction sites and visualization.
  • [http://de-de.invitrogen.com/site/de/de/home/Products-and-Services/Applications/Cloning/vector-nti-software.html Vector NTI] (commercial)
    All our primers were designed using Vector NTI which is also used by our advisors.
  • [http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST]
    BLAST was our main sequence search tool. It was quite useful for controlling sequence results.
  • [http://biologylabs.utah.edu/jorgensen/wayned/ape/ ApE]
    The free and useful plasmid editor.
  • [http://drive.google.com Google Drive]
    Google Drive was used for our documentation and all of our collaborative work (papers, poster, images).