Team:TU-Delft/Snifferometer

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In conclusion, the concept to build a Snifferometer is feasible. However, there is still room for improvement because the sensitivity of the device is not so satisfactory. Some suggested ways include:
In conclusion, the concept to build a Snifferometer is feasible. However, there is still room for improvement because the sensitivity of the device is not so satisfactory. Some suggested ways include:
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  <li>Reduce background light intensity. For example, the material of Snifferometer cap can be made with black coarse surface instead of smooth blue, so the reflection of background can be reduced.
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  <li>Reduce light intensity of background. For example, the material of Snifferometer cap can be made with black coarse surface instead of smooth blue, so the reflection of background can be reduced.
  <li>Increase green light intensity
  <li>Increase green light intensity
  <li>Enhance the sensitivity of the circuit, such as increase the feedback resistor of op amp.  
  <li>Enhance the sensitivity of the circuit, such as increase the feedback resistor of op amp.  

Revision as of 16:15, 26 October 2012

Team:TUDelft/CSSLaksh Menu

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In order to assess the feasibility using our Snifferomyces cells as a diagnosis method, a device called "Snifferometer" was built to measure the status of fluorescence. The purpose of building such a device is to overcome the complexity, incalculability, and the high cost of using fluorescence microscope.

Contents

Construction of Snifferometer

Scheme of the Device

Figure 1 shows the concept of how the device works. The LEDs emit blue light on the liquid mixing Snifferomyces and sputum of the patient. Later, the photodiode collects the glowing light and transfers it into an amplified signal of voltage. Thus, by reading the number of voltmeter, the status of TB smelling cells in sputum can be detected.

Figure 1: Scheme of Snifferometer
Figure 2: Real prototype of Snifferometer

Circuit of Snifferometer

The photodiode converts the light intensity into small current, and op amp is needed to amplify the small current signal.

Figure 3: Circuit of Snifferometer

Wavelength

By looking up in the Table of Fluorochrome, the peak excitement and emission wavelengthes of EGFP are known, which are 488nm and 507nm respectively.

Blue LEDs are chosen with the dominant wavelength of 470nm.

And the responsibility spectrum of photodiode can be seen here.

Thus a high-pass filter is needed which has a cutoff frequency around 500nm. Two filters were tested to give a comparison:

Test

Since the fluorescence signal emitted from yeast is not very strong to reach the sensitivity of our prototype, the E-coli with TagGFP2 overexpression is then used to test the feasibility of our device. TagGFP2 has 483nm and 506nm for its excitement and emission peak wavelength which is similar with EGFP.

Eppendorf tubes are used to contain the liquid. The Control sets are M9 medium with E-coli, while the Test sets are M9 medium with E-coli overexpressing TagGFP2. M9 medium is used because it has low autofluorescence.

Figure 4: Measured data

The data of Test sets are higher than these of Control sets, which means Snifferometer is capable to detect the glowing GFP. Moreover, the data also shows Filter 2 is better than Filter 1, since its passing high wavelength is overlapping more with the responsible spectra of photodiode.

In conclusion, the concept to build a Snifferometer is feasible. However, there is still room for improvement because the sensitivity of the device is not so satisfactory. Some suggested ways include:

  • Reduce light intensity of background. For example, the material of Snifferometer cap can be made with black coarse surface instead of smooth blue, so the reflection of background can be reduced.
  • Increase green light intensity
  • Enhance the sensitivity of the circuit, such as increase the feedback resistor of op amp.
  • Enlarge the area of fluorescent: in the test, limited by suitable container, Eppendorf tubes were used, which has a small area to reflect and glow light. We can enhance the received signal for example by using petri dish or plate.