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Team:TU-Delft/Analysis - Revision history
2024-03-28T16:54:10Z
Revision history for this page on the wiki
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Lizah at 01:42, 27 October 2012
2012-10-27T01:42:56Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Stability and time-dependant sensitivity analyses were implemented for the deterministic pathway model.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Stability and time-dependant sensitivity analyses were implemented for the deterministic pathway model.</div></td></tr>
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Lizah
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=294884&oldid=prev
Eftychia: Undo revision 294872 by Eftychia (talk)
2012-10-27T01:38:49Z
<p>Undo revision 294872 by <a href="/Special:Contributions/Eftychia" title="Special:Contributions/Eftychia">Eftychia</a> (<a href="/wiki/index.php?title=User_talk:Eftychia&action=edit&redlink=1" class="new" title="User talk:Eftychia (page does not exist)">talk</a>)</p>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><div id="contentbox" style="text-align:justify;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Stability and time-dependant sensitivity analyses were implemented for the deterministic pathway model.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Stability and time-dependant sensitivity analyses were implemented for the deterministic pathway model.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Stability analysis =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Stability analysis =</div></td></tr>
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Eftychia
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=294872&oldid=prev
Eftychia at 01:38, 27 October 2012
2012-10-27T01:38:28Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Stability and time-dependant sensitivity analyses were implemented for the deterministic pathway model.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Stability and time-dependant sensitivity analyses were implemented for the deterministic pathway model.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Stability analysis =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Stability analysis =</div></td></tr>
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Eftychia
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236523&oldid=prev
Panifan: /* Sensitivity of rates */
2012-09-27T03:28:06Z
<p><span class="autocomment">Sensitivity of rates</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:r20.gif|580px|left|thumb|'''Figure 5''': Sensitivity analysis of rates in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:r20.gif|580px|left|thumb|'''Figure 5''': Sensitivity analysis of rates in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:rates.png|150px|middle|thumb|'''Figure 6''': <del class="diffchange diffchange-inline">labels </del>for rates]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:rates.png|150px|middle|thumb|'''Figure 6''': <ins class="diffchange diffchange-inline">Labels </ins>for rates]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of rate sensitivity.png|280px|left|thumb|'''Table 3''': Sensitivity ranking of sensitive rates.]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of rate sensitivity.png|280px|left|thumb|'''Table 3''': Sensitivity ranking of sensitive rates.]]</div></td></tr>
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Panifan
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236481&oldid=prev
Panifan: /* Sensitivity of initial concentrations */
2012-09-27T03:27:25Z
<p><span class="autocomment">Sensitivity of initial concentrations</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of initial concentration sensitivity.png|480px|left|thumb|'''Table 4''': Sensitivity ranking of initial concentrations.(red indicates the most sensitive ones, green the less sensitive, and the black ones are not so important)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of initial concentration sensitivity.png|480px|left|thumb|'''Table 4''': Sensitivity ranking of initial concentrations.(red indicates the most sensitive ones, green the less sensitive, and the black ones are not so important)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:ic.png|100px|middle|thumb|'''Figure 10''': <del class="diffchange diffchange-inline">labels </del>for concentrations]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:ic.png|100px|middle|thumb|'''Figure 10''': <ins class="diffchange diffchange-inline">Labels </ins>for <ins class="diffchange diffchange-inline">initial </ins>concentrations]]</div></td></tr>
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Panifan
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236305&oldid=prev
Panifan: /* Sensitivity of initial concentrations */
2012-09-27T03:24:38Z
<p><span class="autocomment">Sensitivity of initial concentrations</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:24, 27 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of initial concentration sensitivity.png|480px|left|thumb|'''Table 4''': Sensitivity ranking of initial concentrations.(red indicates the most sensitive ones, green the less sensitive, and the black ones are not so important)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of initial concentration sensitivity.png|480px|left|thumb|'''Table 4''': Sensitivity ranking of initial concentrations.(red indicates the most sensitive ones, green the less sensitive, and the black ones are not so important)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:ic.png|<del class="diffchange diffchange-inline">150px</del>|middle|thumb|'''Figure 10''': labels for concentrations]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:ic.png|<ins class="diffchange diffchange-inline">100px</ins>|middle|thumb|'''Figure 10''': labels for concentrations]]</div></td></tr>
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Panifan
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236272&oldid=prev
Panifan: /* Sensitivity of initial concentrations */
2012-09-27T03:24:09Z
<p><span class="autocomment">Sensitivity of initial concentrations</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:24, 27 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:i02.gif|580px|left|thumb|'''Figure 7''': Sensitivity analysis of initial concentrations in log scale when input is 0.002 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:i02.gif|580px|left|thumb|'''Figure 7''': Sensitivity analysis of initial concentrations in log scale when input is 0.002 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">[[File:ic.png|40px|right|thumb|'''Figure 10''': labels for concentrations]]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">[[File:i2.gif|480px|left|thumb|'''Figure 8''': Sensitivity analysis of initial concentrations in log scale when input is 2 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:i20.gif|<del class="diffchange diffchange-inline">440px</del>|left|thumb|'''Figure 9''': Sensitivity analysis of initial concentrations in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">[[File:i2.gif|580px|left|thumb|'''Figure 8''': Sensitivity analysis of initial concentrations in log scale when input is 2 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:i20.gif|<ins class="diffchange diffchange-inline">580px</ins>|left|thumb|'''Figure 9''': Sensitivity analysis of initial concentrations in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of initial concentration sensitivity.png|480px|left|thumb|'''Table 4''': Sensitivity ranking of initial concentrations.(red indicates the most sensitive ones, green the less sensitive, and the black ones are not so important)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of initial concentration sensitivity.png|480px|left|thumb|'''Table 4''': Sensitivity ranking of initial concentrations.(red indicates the most sensitive ones, green the less sensitive, and the black ones are not so important)]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[File:ic.png|150px|middle|thumb|'''Figure 10''': labels for concentrations]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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</table>
Panifan
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236223&oldid=prev
Panifan: /* Sensitivity of rates */
2012-09-27T03:23:26Z
<p><span class="autocomment">Sensitivity of rates</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:23, 27 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:r20.gif|580px|left|thumb|'''Figure 5''': Sensitivity analysis of rates in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:r20.gif|580px|left|thumb|'''Figure 5''': Sensitivity analysis of rates in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:rates.png|<del class="diffchange diffchange-inline">100px</del>|<del class="diffchange diffchange-inline">right</del>|thumb|'''Figure 6''': labels for rates]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:rates.png|<ins class="diffchange diffchange-inline">150px</ins>|<ins class="diffchange diffchange-inline">middle</ins>|thumb|'''Figure 6''': labels for rates]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of rate sensitivity.png|280px|left|thumb|'''Table 3''': Sensitivity ranking of sensitive rates.]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of rate sensitivity.png|280px|left|thumb|'''Table 3''': Sensitivity ranking of sensitive rates.]]</div></td></tr>
</table>
Panifan
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236178&oldid=prev
Panifan: /* Sensitivity of rates */
2012-09-27T03:22:38Z
<p><span class="autocomment">Sensitivity of rates</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:22, 27 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Sensitivity of rates ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Sensitivity of rates ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>By varying the input from 0.002 to 20 micromolar and the magnitude of perturbation from 20% to 300%, all of these sensitivity analysis conclude the same ranking of sensitivity, in which only 3 rates are really important to the output and the sensitivities of other rates are lower than 1%, as shows in Table 3.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>By varying the input from 0.002 to 20 micromolar and the magnitude of perturbation from 20% to 300%, all of these sensitivity analysis conclude the same ranking of sensitivity, in which only 3 rates are really important to the output and the sensitivities of other rates are lower than 1%, as shows in Table 3.</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:r2.gif|<del class="diffchange diffchange-inline">440px</del>|left|thumb|'''Figure 4''': Sensitivity analysis of rates in log scale when input is 2 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:r2.gif|<ins class="diffchange diffchange-inline">580px</ins>|left|thumb|'''Figure 4''': Sensitivity analysis of rates in log scale when input is 2 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">[[File:rates.png|80px|right|thumb|'''Figure 6''': labels for rates]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:r20.gif|<del class="diffchange diffchange-inline">440px</del>|left|thumb|'''Figure 5''': Sensitivity analysis of rates in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:r20.gif|<ins class="diffchange diffchange-inline">580px</ins>|left|thumb|'''Figure 5''': Sensitivity analysis of rates in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)<ins class="diffchange diffchange-inline">]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">[[File:rates.png|100px|right|thumb|'''Figure 6''': labels for rates</ins>]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of rate sensitivity.png|280px|left|thumb|'''Table 3''': Sensitivity ranking of sensitive rates.]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:Table of rate sensitivity.png|280px|left|thumb|'''Table 3''': Sensitivity ranking of sensitive rates.]]</div></td></tr>
</table>
Panifan
http://2012.igem.org/wiki/index.php?title=Team:TU-Delft/Analysis&diff=236048&oldid=prev
Panifan: /* Sensitivity of initial concentrations */
2012-09-27T03:20:38Z
<p><span class="autocomment">Sensitivity of initial concentrations</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:20, 27 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:i02.gif|580px|left|thumb|'''Figure 7''': Sensitivity analysis of initial concentrations in log scale when input is 0.002 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:i02.gif|580px|left|thumb|'''Figure 7''': Sensitivity analysis of initial concentrations in log scale when input is 0.002 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:ic.png|40px|right|thumb|'''Figure 10''': labels for concentrations]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:ic.png|40px|right|thumb|'''Figure 10''': labels for concentrations]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:i2.gif|<del class="diffchange diffchange-inline">500px</del>|left|thumb|'''Figure 8''': Sensitivity analysis of initial concentrations in log scale when input is 2 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:i2.gif|<ins class="diffchange diffchange-inline">480px</ins>|left|thumb|'''Figure 8''': Sensitivity analysis of initial concentrations in log scale when input is 2 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:i20.gif|440px|left|thumb|'''Figure 9''': Sensitivity analysis of initial concentrations in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:i20.gif|440px|left|thumb|'''Figure 9''': Sensitivity analysis of initial concentrations in log scale when input is 20 micromolar.(Magnitude of perturbation varies from 20%, 50%, 80%, 100% to 300%)]]</div></td></tr>
</table>
Panifan