Team:SYSU-Software/Clotho

From 2012.igem.org

(Difference between revisions)
(Created page with "<style type="text/css"> .style1 { text-indent: 21.0pt; text-align: justify; font-size: 10.5pt; font-family: Calibri, sans-serif; margin-left: 0cm; margin-right: 0cm; margi...")
 
(3 intermediate revisions not shown)
Line 98: Line 98:
<div id="doc-contents">
<div id="doc-contents">
<h2><span lang="EN-US"  id="r1">Introduction<o:p></o:p></span></h2>
<h2><span lang="EN-US"  id="r1">Introduction<o:p></o:p></span></h2>
-
<p><span lang="zh-cn">Clotho assists researchers to engineer synthetic  
+
<p class="MsoNormal"><b style="mso-bidi-font-weight:normal"><span lang="EN-US">
 +
Clotho </span></b><span lang="EN-US">assists researchers to engineer synthetic  
biological systems and manage the data which is used to create them. It has been  
biological systems and manage the data which is used to create them. It has been  
developed as the App environment that anyone can create and share new tools in  
developed as the App environment that anyone can create and share new tools in  
it. These tools facilitate synthetic biologists to arrange their researches  
it. These tools facilitate synthetic biologists to arrange their researches  
-
under the computer-based and automated- designed environment. Thus, to advanced  
+
under the computer-based and automated- designed environment. <o:p></o:p></span>
-
develop the Clotho frame, we have successfully transfer the seven parts of our  
+
</p>
-
software, BiArkit, into Apps. Users can choose to employ our software through  
+
<p class="MsoNormal"><span lang="EN-US">Thus, to advanced develop the Clotho  
-
the Clotho media.</span><o:p></o:p></p>
+
frame, we have successfully transfer the seven parts of our software, BiArkit,  
-
<p>
+
into Apps. Users can choose to employ our software through the Clotho media. The
-
<o:p></o:p></p>
+
specific information is shown below:</span></p>
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style2">
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style2">
<span lang="EN-US"><strong>Home</strong><o:p></o:p></span></p>
<span lang="EN-US"><strong>Home</strong><o:p></o:p></span></p>
Line 113: Line 114:
  o:spid="_x0000_i1038" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\截图with注释\Home-clotho.png"
  o:spid="_x0000_i1038" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\截图with注释\Home-clotho.png"
  style='width:412.8pt;height:278.4pt;visibility:visible;mso-wrap-style:square'>
  style='width:412.8pt;height:278.4pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/8/89/Tutorial_%2831%29.png"  style="width: 650px;" o:title="Home-clotho"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/9/9a/Home.png"  style="width: 650px;" o:title="Home-clotho"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
Line 127: Line 128:
  o:spid="_x0000_i1037" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\genomebrowser2.png"
  o:spid="_x0000_i1037" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\genomebrowser2.png"
  style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
  style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/e/e6/Tutorial_%2832%29.png" style="width: 650px;"  o:title="genomebrowser2"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/5/54/Genomebrowser2.png" style="width: 650px;"  o:title="genomebrowser2"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
Line 142: Line 143:
  o:spid="_x0000_i1035" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\biobrick2.png"
  o:spid="_x0000_i1035" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\biobrick2.png"
  style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
  style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/5/5e/Tutorial_%2834%29.png"  style="width: 650px;" o:title="biobrick2"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/1/1d/Biobrick2.png"  style="width: 650px;" o:title="biobrick2"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
Line 160: Line 161:
  o:spid="_x0000_i1032" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\riboswitch down.png"
  o:spid="_x0000_i1032" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\riboswitch down.png"
  style='width:418.2pt;height:352.2pt;visibility:visible;mso-wrap-style:square'>
  style='width:418.2pt;height:352.2pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/4/40/Tutorial_%2837%29.png"  style="width: 650px;" o:title="riboswitch down"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/0/03/Riboswitch1.png"  style="width: 650px;" o:title="riboswitch down"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
 +
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
 +
<span lang="EN-US" style="mso-no-proof:yes">
 +
<v:shape id="图片_x0020_657"
 +
o:spid="_x0000_i1032" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\riboswitch down.png"
 +
style='width:418.2pt;height:352.2pt;visibility:visible;mso-wrap-style:square'>
 +
<img src="https://static.igem.org/mediawiki/igem.org/5/51/Riboswitch_down.png"  style="width: 650px;" o:title="riboswitch down"/></v:shape></span><![if !supportLists]><![endif]></p>
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<![if !supportLists]>
<![if !supportLists]>
-
<span style="mso-list:Ignore">
+
<![endif]></p>
-
<span lang="EN-US" style="font-family:Wingdings;mso-fareast-font-family:Wingdings;
+
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
-
mso-bidi-font-family:Wingdings"><span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;</span></span><span lang="EN-US" style="mso-fareast-font-family:Wingdings;
+
<o:p></o:p></p>
-
mso-bidi-font-family:Wingdings"><span style="font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;" class="style3"><strong>
+
-
</strong>
+
-
</span></span></span><![endif]></p>
+
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<![if !supportLists]>
<![if !supportLists]>
Line 176: Line 180:
  o:spid="_x0000_i1031" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\sirna.png"
  o:spid="_x0000_i1031" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\sirna.png"
  style='width:415.2pt;height:258.6pt;visibility:visible;mso-wrap-style:square'>
  style='width:415.2pt;height:258.6pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/e/e4/Tutorial_%2838%29.png"  style="width: 650px;" o:title="sirna"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/f/ff/Sirna2.png"  style="width: 650px;" o:title="sirna"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
Line 182: Line 186:
<span lang="EN-US" style="font-family:Wingdings;mso-fareast-font-family:Wingdings;
<span lang="EN-US" style="font-family:Wingdings;mso-fareast-font-family:Wingdings;
mso-bidi-font-family:Wingdings"><span style="mso-list:Ignore"><span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;
mso-bidi-font-family:Wingdings"><span style="mso-list:Ignore"><span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;
-
</span></span></span><![endif]><span lang="EN-US" class="style3"><strong>Network Illustrator</strong><o:p></o:p></span></p>
+
</span></span></span><![endif]></p>
 +
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
 +
<o:p></o:p></p>
 +
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
 +
<span lang="EN-US" class="style3"><strong>Network Illustrator</strong><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes"><v:shape id="图片_x0020_649"
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes"><v:shape id="图片_x0020_649"
  o:spid="_x0000_i1030" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\metanetwork2.png"
  o:spid="_x0000_i1030" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\metanetwork2.png"
  style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
  style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/b/bc/Tutorial_%2839%29.png"  style="width: 650px;" o:title="metanetwork2"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/d/d7/Network.png"  style="width: 650px;" o:title="metanetwork2"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
Line 200: Line 208:
<strong>&nbsp;
<strong>&nbsp;
</strong>
</strong>
-
</span></span></span><![endif]><span lang="EN-US" class="style3"><strong>Simulator</strong><o:p></o:p></span></p>
+
</span></span></span><![endif]><span lang="EN-US" class="style3"><strong>Simulator</strong></span><span lang="EN-US" style="mso-no-proof:yes"><v:shape id="图片_x0020_651"
-
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
+
-
<v:shape id="图片_x0020_651"
+
  o:spid="_x0000_i1028" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\fba.png"
  o:spid="_x0000_i1028" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\fba.png"
-
  style='width:414.6pt;height:316.2pt;visibility:visible;mso-wrap-style:square'>
+
  style='width:414.6pt;height:316.2pt;visibility:visible;mso-wrap-style:square'>&nbsp;</v:shape><v:shape id="图片_x0020_652"
-
&nbsp;</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
+
o:spid="_x0000_i1027" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\fba1.png"
-
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes"><v:shape id="图片_x0020_652"
+
style='width:414.6pt;height:298.8pt;visibility:visible;mso-wrap-style:square'><img src="https://static.igem.org/mediawiki/igem.org/1/1a/Fba_main.png" style="width: 650px;" o:title="fba1"/>
 +
</v:shape></span><o:p></o:p>
 +
</p>
 +
<p class="MsoNormal">
 +
<o:p></o:p>
 +
<span lang="EN-US" style="mso-no-proof:yes">
 +
<v:shape id="图片_x0020_656"
  o:spid="_x0000_i1027" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\fba1.png"
  o:spid="_x0000_i1027" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\fba1.png"
  style='width:414.6pt;height:298.8pt;visibility:visible;mso-wrap-style:square'>
  style='width:414.6pt;height:298.8pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/c/c2/Tutorial_%2842%29.png"  style="width: 650px;" o:title="fba1"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/0/04/Fba1.png"  style="width: 650px;" o:title="fba1"/></v:shape></span><o:p></o:p></p>
-
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
+
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
 +
<v:shape id="图片_x0020_653"
 +
o:spid="_x0000_i1026" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\gcircle3.png"
 +
style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
 +
&nbsp;</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<p style="mso-char-indent-count: 0; mso-list: l1 level1 lfo1; text-justify: inter-ideograph;" class="style1">
<![if !supportLists]>
<![if !supportLists]>
Line 219: Line 235:
</strong>
</strong>
</span></span></span><![endif]><span lang="EN-US" class="style3"><strong>G-Circle</strong><o:p></o:p></span></p>
</span></span></span><![endif]><span lang="EN-US" class="style3"><strong>G-Circle</strong><o:p></o:p></span></p>
-
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes">
 
-
<v:shape id="图片_x0020_653"
 
-
o:spid="_x0000_i1026" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\gcircle3.png"
 
-
style='width:414.6pt;height:319.2pt;visibility:visible;mso-wrap-style:square'>
 
-
&nbsp;</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
 
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes"><v:shape id="图片_x0020_655"
<p class="MsoNormal"><span lang="EN-US" style="mso-no-proof:yes"><v:shape id="图片_x0020_655"
  o:spid="_x0000_i1025" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\gcircle2.png"
  o:spid="_x0000_i1025" type="#_x0000_t75" alt="说明: E:\Biology\iGEM\软件组\biarkit截图(1)\biarkit截图\clotho\gcircle2.png"
  style='width:414.6pt;height:312.6pt;visibility:visible;mso-wrap-style:square'>
  style='width:414.6pt;height:312.6pt;visibility:visible;mso-wrap-style:square'>
-
  <img src="https://static.igem.org/mediawiki/igem.org/2/22/Tutorial_%2844%29.png" style="width: 650px;"  o:title="gcircle2"/>
+
  <img src="https://static.igem.org/mediawiki/igem.org/c/cd/Gcircle3.png" style="width: 650px;"  o:title="gcircle2"/>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
</v:shape></span><span lang="EN-US"><o:p></o:p></span></p>
         <p></p>  
         <p></p>  

Latest revision as of 02:41, 27 October 2012

<style type="text/css"> .style1 { text-indent: 21.0pt; text-align: justify; font-size: 10.5pt; font-family: Calibri, sans-serif; margin-left: 0cm; margin-right: 0cm; margin-top: 0cm; margin-bottom: .0001pt; } .style2 { text-indent: 21.0pt; text-align: justify; margin-left: 0cm; margin-right: 0cm; margin-top: 0cm; margin-bottom: .0001pt; } .style3 { font-family: serif; font-size: 1.3em; } </style>

无标题 1
 

Clotho App

Introduction

Clotho assists researchers to engineer synthetic biological systems and manage the data which is used to create them. It has been developed as the App environment that anyone can create and share new tools in it. These tools facilitate synthetic biologists to arrange their researches under the computer-based and automated- designed environment.

Thus, to advanced develop the Clotho frame, we have successfully transfer the seven parts of our software, BiArkit, into Apps. Users can choose to employ our software through the Clotho media. The specific information is shown below:

Home

 

Genome Browser

 

  Biobrick

 

  RiboSwitch

SiRNA

 

Network Illustrator

 

  Simulator 

 

  G-Circle

 

Retrieved from "http://2012.igem.org/Team:SYSU-Software/Clotho"