http://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&feed=atom&action=historyTeam:SUSTC-Shenzhen-A/RFC - Revision history2024-03-29T05:26:53ZRevision history for this page on the wikiMediaWiki 1.16.0http://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=285058&oldid=prevM.B.ZHOU at 14:50, 26 October 20122012-10-26T14:50:30Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><p><big>&nbsp;&nbsp;To download this BBF RFC, please click <a href="http://dspace.mit.edu/handle/1721.1/73910">here!</a></big></p></ins></div></td></tr>
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</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=216991&oldid=prevM.B.ZHOU at 21:12, 26 September 20122012-09-26T21:12:35Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;Information is not complete in partsregistry.org</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;Information is not complete in partsregistry.org</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;When the partsregistry.org was established at first, it is worth to be called the authority of the BioBricks. But as time goes by, more and more BioBricks are added in, now partsregistry.org becomes less satisfy. Information of many BioBricks are incomplete, some even wrong. Because every one can submit one's BioBrick as long as one logs in, many information is informal since the website doesn't examine the information users submit. This would waste resource as well as mess up the database.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;When the <ins class="diffchange diffchange-inline"><a href="http://</ins>partsregistry.org<ins class="diffchange diffchange-inline">/Main_Page">partsregistry.org</a> </ins>was established at first, it is worth to be called the authority of the BioBricks. But as time goes by, more and more BioBricks are added in, now <ins class="diffchange diffchange-inline"><a href="http://partsregistry.org/Main_Page"></ins>partsregistry.org<ins class="diffchange diffchange-inline"></a> </ins>becomes less satisfy. Information of many BioBricks are incomplete, some even wrong. Because every one can submit one's BioBrick as long as one logs in, many information is informal since the website doesn't examine the information users submit. This would waste resource as well as mess up the database.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;Moreover, the layout of the website becomes more unclear as the database becomes larger and larger. For example, the Catalog. In this page, BioBricks are classified according to many different criteria. But the interface style in one section is far different from it in another section. Sometimes it is the description of a project, sometimes it becomes BioBrick list. A large list will be prsented in front of users with hundreds of BioBricks, but no search tool is available for users to search for the BioBrick that they really want. All of these would increase the difficulty for users to find the information that they want. For example, in the following figure, no list for Translational units can be found while others have long lists.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;Moreover, the layout of the website becomes more unclear as the database becomes larger and larger. For example, the Catalog. In this page, BioBricks are classified according to many different criteria. But the interface style in one section is far different from it in another section. Sometimes it is the description of a project, sometimes it becomes BioBrick list. A large list will be prsented in front of users with hundreds of BioBricks, but no search tool is available for users to search for the BioBrick that they really want. All of these would increase the difficulty for users to find the information that they want. For example, in the following figure, no list for Translational units can be found while others have long lists.</p></div></td></tr>
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</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=203277&oldid=prevMelanieZhang at 16:07, 26 September 20122012-09-26T16:07:19Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;In 2003, the first attempt to make a synthetic biology a discipline that everyone can share about it was made. After the appearance of the first BioBrick(tm), the concept about standardization had been widely accepted. And it is a trend in synthetic biology now. </p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;In 2003, the first attempt to make a synthetic biology a discipline that everyone can share about it was made. After the appearance of the first BioBrick(tm), the concept about standardization had been widely accepted. And it is a trend in synthetic biology now. </p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;Thanks to the standardization, biologists have developed many useful tools with the help of the standardized parts, the BioBricks. These BioBricks really contribute a lot to the research field. And they make easier for researchers to communicate with each other under the same technical standards. Due to the convenience of BioBricks, thousands of BioBricks have been created and introduced during these years. Thus the database containing these BioBricks is getting larger and larger.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;Thanks to the standardization, biologists have developed many useful tools with the help of the standardized parts, the BioBricks. These BioBricks really contribute a lot to the research field. And they make <ins class="diffchange diffchange-inline">it </ins>easier for researchers to communicate with each other under the same technical standards. Due to the convenience of BioBricks, thousands of BioBricks have been created and introduced during these years. Thus the database containing these BioBricks is getting larger and larger.</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;But here comes the problem. Since every one can share their BioBricks, sometimes the information of the BioBricks are incomplet when they submit. So it becomes hard for users to search for a BioBrick that they want. Although there is an RFC, RFC 52 already, but we are not satisfied. Because <del class="diffchange diffchange-inline">of </del>the <del class="diffchange diffchange-inline">generl </del>description of it, the database of the BioBricks is still a mess. So we want to create a new RFC to replace RFC 52.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;But here comes the problem. Since every one can share their BioBricks, sometimes the information of the BioBricks are incomplet when they submit. So it becomes hard for users to search for a BioBrick that they want. Although there is an RFC, RFC 52 already, but we are not satisfied. Because the description of it <ins class="diffchange diffchange-inline">is too general</ins>, the database of the BioBricks is still a mess. So we want to create a new RFC to replace RFC 52.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;We want to establish an RFC to describe the minimum information for a qualified BioBrick. We listed the minimum information a BioBrick should have, and gave a short description for each of them. Especially, we want to qualify the classification of BioBricks. All the BioBricks should be organized, so that users can search for it easily.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;We want to establish an RFC to describe the minimum information for a qualified BioBrick. We listed the minimum information a BioBrick should have, and gave a short description for each of them. Especially, we want to qualify the classification of BioBricks. All the BioBricks should be organized, so that users can search for it easily.</p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;Information is not complete in partsregistry.org</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;Information is not complete in partsregistry.org</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;When the partsregistry.org was established at first, it is worth to be called the authority of the BioBricks. But as time goes by, more and more BioBricks are added in, now partsregistry.org becomes less satisfy. Information of many BioBricks are incomplete, some even wrong. Because every one can submit one's BioBrick as long as one logs in, many information is informal since the website doesn't examine the information users submit. This would waste resource as well as mess up the database.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;When the partsregistry.org was established at first, it is worth to be called the authority of the BioBricks. But as time goes by, more and more BioBricks are added in, now partsregistry.org becomes less satisfy. Information of many BioBricks are incomplete, some even wrong. Because every one can submit one's BioBrick as long as one logs in, many information is informal since the website doesn't examine the information users submit. This would waste resource as well as mess up the database.</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;Moreover, the layout of the website becomes more unclear as the database becomes larger and larger. For example, the <del class="diffchange diffchange-inline">Catlog</del>. In this page, BioBricks are classified according to many different criteria. But the interface style in one section is far different from it in another section. Sometimes it is the description of a project, sometimes it becomes BioBrick list. A large list will be prsented in front of users with hundreds of BioBricks, but no search tool is available for users to search for the BioBrick that they really want. All of these would increase the difficulty for users to find the information that they want. For example, in the following figure, no list for Translational units can be found while others have long lists.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;Moreover, the layout of the website becomes more unclear as the database becomes larger and larger. For example, the <ins class="diffchange diffchange-inline">Catalog</ins>. In this page, BioBricks are classified according to many different criteria. But the interface style in one section is far different from it in another section. Sometimes it is the description of a project, sometimes it becomes BioBrick list. A large list will be prsented in front of users with hundreds of BioBricks, but no search tool is available for users to search for the BioBrick that they really want. All of these would increase the difficulty for users to find the information that they want. For example, in the following figure, no list for Translational units can be found while others have long lists.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center">&nbsp;&nbsp;&nbsp;&nbsp;<img src="https://static.igem.org/mediawiki/2012/b/b5/Problem1.jpg"></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center">&nbsp;&nbsp;&nbsp;&nbsp;<img src="https://static.igem.org/mediawiki/2012/b/b5/Problem1.jpg"></p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center"><img src="https://static.igem.org/mediawiki/2012/6/6d/Properties_list.png"></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center"><img src="https://static.igem.org/mediawiki/2012/6/6d/Properties_list.png"></p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;With these long list, <del class="diffchange diffchange-inline">no </del>nobody has the patience to look through them all. Indeed many properties are rubbish. Look at the property No.34-No.37, they are completely useless because they are apparently not a part of information of a BioBrick. Another example is property No.14, specified_scar_u_list. This property is NULL, which means it contains no information, for nearly all the BioBricks. We draw a histogram to demonstrate the percentage of unqualified and qualified BioBricks.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;With these long list, nobody has the patience to look through them all. Indeed many properties are rubbish. Look at the property No.34-No.37, they are completely useless because they are apparently not a part of information of a BioBrick. Another example is property No.14, specified_scar_u_list. This property is NULL, which means it contains no information, for nearly all the BioBricks. We draw a histogram to demonstrate the percentage of unqualified and qualified BioBricks.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center">&nbsp;&nbsp;<img src="https://static.igem.org/mediawiki/2012/2/22/Histogram_for_database.png"></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center">&nbsp;&nbsp;<img src="https://static.igem.org/mediawiki/2012/2/22/Histogram_for_database.png"></p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title"><strong>Our BBF RFC 89:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title"><strong>Our BBF RFC 89:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Motivation to write this BBF RFC</h3></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Motivation to write this BBF RFC</h3></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template <del class="diffchange diffchange-inline">of </del>storing the information of BioBricks.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template <ins class="diffchange diffchange-inline">for </ins>storing the information of BioBricks.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td></tr>
</table>MelanieZhanghttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=164600&oldid=prevM.B.ZHOU at 03:00, 25 September 20122012-09-25T03:00:10Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We can conclude from the above histogram that only one fourth of the properties are valid properties. So most information in the database is trash. Because of the mess in the database, it is essential to standardize the minimum information for a qualified BioBrick.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We can conclude from the above histogram that only one fourth of the properties are valid properties. So most information in the database is trash. Because of the mess in the database, it is essential to standardize the minimum information for a qualified BioBrick.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p class="title"><strong>Our <del class="diffchange diffchange-inline">RFC89</del>:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p class="title"><strong>Our <ins class="diffchange diffchange-inline">BBF RFC 89</ins>:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Motivation to write this BBF RFC</h3></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Motivation to write this BBF RFC</h3></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</p></div></td></tr>
</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=164288&oldid=prevM.B.ZHOU at 01:57, 25 September 20122012-09-25T01:57:00Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td valign="top"></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td valign="top"></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><h1 class="title"><strong><del class="diffchange diffchange-inline">Ways leading to a standardized bio-engineered world</del></strong></h1></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><h1 class="title"><strong><ins class="diffchange diffchange-inline">Introduction</ins></strong></h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;In 2003, the first attempt to make a synthetic biology a discipline that everyone can share about it was made. After the appearance of the first BioBrick(tm), the concept about standardization had been widely accepted. And it is a trend in synthetic biology now. </p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <p>&nbsp;&nbsp;&nbsp;&nbsp;In 2003, the first attempt to make a synthetic biology a discipline that everyone can share about it was made. After the appearance of the first BioBrick(tm), the concept about standardization had been widely accepted. And it is a trend in synthetic biology now. </p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We can conclude from the above histogram that only one fourth of the properties are valid properties. So most information in the database is trash. Because of the mess in the database, it is essential to standardize the minimum information for a qualified BioBrick.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We can conclude from the above histogram that only one fourth of the properties are valid properties. So most information in the database is trash. Because of the mess in the database, it is essential to standardize the minimum information for a qualified BioBrick.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p class="title"><strong>Our <del class="diffchange diffchange-inline">RFC#</del>:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p class="title"><strong>Our <ins class="diffchange diffchange-inline">RFC89</ins>:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Motivation to write this BBF RFC</h3></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h3>Motivation to write this BBF RFC</h3></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><br/<del class="diffchange diffchange-inline">><p>Note: We have followed the intruction and emailed rfc@biobricks.org to request a BBF RFC number in date. The BBF RFC number will be assigned soon!</p</del>></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td></tr>
</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=155945&oldid=prevM.B.ZHOU at 12:31, 24 September 20122012-09-24T12:31:20Z<p></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 12:31, 24 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><big>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></big></p></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><br/><p>Note: We have followed the intruction and emailed rfc@biobricks.org to request a BBF RFC number in date. The BBF RFC number will be assigned soon!</p></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td></tr>
</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=154520&oldid=prevM.B.ZHOU at 09:21, 24 September 20122012-09-24T09:21:39Z<p></p>
<table style="background-color: white; color:black;">
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h1 class="title"><strong>The current problem</strong></h1></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h1 class="title"><strong>The current problem</strong></h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;<del class="diffchange diffchange-inline">Informations are </del>not complete in partsregistry.org</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;<ins class="diffchange diffchange-inline">Information is </ins>not complete in partsregistry.org</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;When the partsregistry.org was established at first, it is worth to be called the authority of the BioBricks. But as time goes by, more and more BioBricks are added in, now partsregistry.org becomes less satisfy. Information of many BioBricks are incomplete, some even wrong. Because every one can submit one's BioBrick as long as one logs in, many information is informal since the website doesn't examine the information users submit. This would waste resource as well as mess up the database.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;When the partsregistry.org was established at first, it is worth to be called the authority of the BioBricks. But as time goes by, more and more BioBricks are added in, now partsregistry.org becomes less satisfy. Information of many BioBricks are incomplete, some even wrong. Because every one can submit one's BioBrick as long as one logs in, many information is informal since the website doesn't examine the information users submit. This would waste resource as well as mess up the database.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;Moreover, the layout of the website becomes more unclear as the database becomes larger and larger. For example, the Catlog. In this page, BioBricks are classified according to many different criteria. But the interface style in one section is far different from it in another section. Sometimes it is the description of a project, sometimes it becomes BioBrick list. A large list will be prsented in front of users with hundreds of BioBricks, but no search tool is available for users to search for the BioBrick that they really want. All of these would increase the difficulty for users to find the information that they want. For example, in the following figure, no list for Translational units can be found while others have long lists.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;Moreover, the layout of the website becomes more unclear as the database becomes larger and larger. For example, the Catlog. In this page, BioBricks are classified according to many different criteria. But the interface style in one section is far different from it in another section. Sometimes it is the description of a project, sometimes it becomes BioBrick list. A large list will be prsented in front of users with hundreds of BioBricks, but no search tool is available for users to search for the BioBrick that they really want. All of these would increase the difficulty for users to find the information that they want. For example, in the following figure, no list for Translational units can be found while others have long lists.</p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center">&nbsp;&nbsp;&nbsp;&nbsp;<img src="https://static.igem.org/mediawiki/2012/e/e0/Problem2.jpg"></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p align="center">&nbsp;&nbsp;&nbsp;&nbsp;<img src="https://static.igem.org/mediawiki/2012/e/e0/Problem2.jpg"></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;<del class="diffchange diffchange-inline">Informations are </del>not useful in database</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p class="title1">&nbsp;&nbsp;<ins class="diffchange diffchange-inline">Information is </ins>not useful in database</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We got a database that contains all the information about all the BioBricks. In this database, every BioBrick has 40 properties, they are:</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We got a database that contains all the information about all the BioBricks. In this database, every BioBrick has 40 properties, they are:</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=154500&oldid=prevM.B.ZHOU at 09:18, 24 September 20122012-09-24T09:18:51Z<p></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 09:18, 24 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a></p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p<ins class="diffchange diffchange-inline">><big</ins>>&nbsp;&nbsp;To see the complete version of this BBF RFC, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here!</a<ins class="diffchange diffchange-inline">></big</ins>></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td></tr>
</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=154033&oldid=prevM.B.ZHOU at 08:22, 24 September 20122012-09-24T08:22:32Z<p></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">Revision as of 08:22, 24 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title"><strong>Our RFC#:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p class="title"><strong>Our RFC#:</strong></p><h1 class="title"><strong>The minimum information for a qualified BioBrick</strong></h1></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p><<del class="diffchange diffchange-inline">strong</del>><del class="diffchange diffchange-inline">Our </del>RFC <del class="diffchange diffchange-inline">is coming soon</del>!</<del class="diffchange diffchange-inline">strong</del>></p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><h3>Motivation to write this BBF RFC</h3></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p><ins class="diffchange diffchange-inline">&nbsp;&nbsp;Since the information of many existing BioBricks is incomplete, thus the usage of the BioBricks will be affected. It is necessary to standardize the minimum information required for a qualified BioBrick. Furthermore this standardization will reduce the time to locate and find a BioBrick. So it is essential to create a default template of storing the information of BioBricks.</ins><<ins class="diffchange diffchange-inline">/p</ins>></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><br/></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p>&nbsp;&nbsp;To see the complete version of this BBF </ins>RFC<ins class="diffchange diffchange-inline">, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC_draft">here</ins>!</<ins class="diffchange diffchange-inline">a</ins>></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></td></div></td></tr>
</table>M.B.ZHOUhttp://2012.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen-A/RFC&diff=152637&oldid=prevM.B.ZHOU at 03:07, 24 September 20122012-09-24T03:07:48Z<p></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:07, 24 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We can conclude from the above histogram that only one fourth of the properties are valid properties. So most information in the database is trash. Because of the mess in the database, it is essential to standardize the minimum information for a qualified BioBrick.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;&nbsp;&nbsp;We can conclude from the above histogram that only one fourth of the properties are valid properties. So most information in the database is trash. Because of the mess in the database, it is essential to standardize the minimum information for a qualified BioBrick.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>&nbsp;&nbsp;</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><<del class="diffchange diffchange-inline">h1 </del>class="title"><strong>Our <del class="diffchange diffchange-inline">brand new </del>RFC#:The minimum information for a qualified BioBrick</strong></h1></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><<ins class="diffchange diffchange-inline">p </ins>class="title"><strong>Our RFC#:<ins class="diffchange diffchange-inline"></strong></p><h1 class="title"><strong></ins>The minimum information for a qualified BioBrick</strong></h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><strong>Our RFC is coming soon!</strong></p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><strong>Our RFC is coming soon!</strong></p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
</table>M.B.ZHOU