Team:NYU Gallatin/Modeling

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  <h2 class="element-invisible">Main menu</h2><ul id="top-main-menu-links" class="links clearfix"><li class="menu-218 first"><a href="/Team:NYU_Gallatin/" title="Home of Aseatobacter.">Home</a></li>
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    <h2>Model It</h2>
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    <ul class="menu clearfix"><li class="first last leaf active-trail"><a href="/Team:NYU_Gallatin/Modeling" title="" class="active-trail active">Modeling</a></li>
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You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
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                          <h1 class="title" id="page-title">Modeling</h1>
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    <div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even"><h1>Bio Synthetic Pathways</h1>
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<p></p><center><img src="http://farm9.staticflickr.com/8175/8052145533_c321d3ac67_z.jpg" /></center>
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<h1>Codonizer</h1>
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<p>To ensure that our modeling worked, we ran our sequences through a custom developed codon optimizer.  Try it our yourself below!  Drop in a chunk of DNA data and click "Optimize Codons" to have your sequence optimized for the acetobacter preferred codons.</p>
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<p><textarea name="codons" id="old-codons" rows="10" cols="80"></textarea><input type="button" id="optimize-codons" value="Optimize Codons" /></p>
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<p>Upon completion of the iGEM competition we would like to expand our Codonizer software to support other strains.  A mockup of what this tools will look like is provided below.</p>
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<p></p><center><img src="http://farm9.staticflickr.com/8460/8052465891_a67ab6b567.jpg" /></center>
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<script type="text/javascript" src="https://static.igem.org/mediawiki/2012/2/2e/Aseatobacter-Javascript_Codonizer.txt"></script></div></div></div>  </div>
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
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!align="center"|[[Team:NYU_Gallatin|Home]]
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!align="center"|[[Team:NYU_Gallatin/Team|Team]]
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!align="center"|[https://igem.org/Team.cgi?year=2012&team_name=NYU_Gallatin Official Team Profile]
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!align="center"|[[Team:NYU_Gallatin/Project|Project]]
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!align="center"|[[Team:NYU_Gallatin/Parts|Parts Submitted to the Registry]]
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!align="center"|[[Team:NYU_Gallatin/Modeling|Modeling]]
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!align="center"|[[Team:NYU_Gallatin/Notebook|Notebook]]
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!align="center"|[[Team:NYU_Gallatin/Safety|Safety]]
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!align="center"|[[Team:NYU_Gallatin/Attributions|Attributions]]
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If you choose to include a '''Modeling''' page, please write about your modeling adventures here.  This is not necessary but it may be a nice list to include.
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{{:Team:NYU_Gallatin/Templates/Footer}}

Latest revision as of 03:09, 4 October 2012

Modeling

Bio Synthetic Pathways

Codonizer

To ensure that our modeling worked, we ran our sequences through a custom developed codon optimizer. Try it our yourself below! Drop in a chunk of DNA data and click "Optimize Codons" to have your sequence optimized for the acetobacter preferred codons.

Upon completion of the iGEM competition we would like to expand our Codonizer software to support other strains. A mockup of what this tools will look like is provided below.

Retrieved from "http://2012.igem.org/Team:NYU_Gallatin/Modeling"