Team:Lyon-INSA/notebook

From 2012.igem.org

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             <li>Miniprep of other clones transformed with the plasmid RBS + XylR : the electrophoresis shows that the ligation isn’t still good…</li>
             <li>Miniprep of other clones transformed with the plasmid RBS + XylR : the electrophoresis shows that the ligation isn’t still good…</li>
       </ul>
       </ul>
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</description>
 +
                      </jour>
 +
 +
<jour nb="9">
 +
                      <date>Thursday, August 9th 2012</date>
 +
                      <titre>For all purposes</titre>
 +
<description>
 +
<ul>
 +
<li>Extraction of NM522/pHT315S. We expected a plasmid without a SpeI site. However, the selected clone contained a plasmid identical to pHT315 (the digestion by SpeI and EcoRI enzymes gives a fragment at 1000 bp). We decided to screen more clones (8 out of 17).</li>
 +
<li>The transformation pSB1C3 + RFP and pSB1T3 + RFP is a success ! (red clones)</li>
 +
</ul>
 +
</description>
 +
                      <titre>Kill</titre>
 +
<description>
 +
Transformation results :
 +
<ul>
 +
        <li>Witness + : okay;</li>
 +
        <li>Witness - : okay;</li>
 +
        <li>Lyso+Dsp : 8 clones;</li>
 +
        <li>Prom+Dsp : more than 30.</li>
 +
</ul>
 +
Clones are screened on Ampicillin and Chloramphenicol.
 +
</description>
 +
                      <titre>Surfactant</titre>
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<description>
 +
<ul>
 +
<li>The transformation of NM522 strain by Sfp-abrB didn’t work again : although the positive control contains many clones (plasmid A2) and the negative control contains nothing, the true transformation contains nothing too ! We decided to do the ligation Sfp-abrB again...</li>
 +
<li>Plasmid extraction of 4 clones NM522 transformed by pBK7+pBK13+pSB1K3 and pBK7+pBK14+pSB1K3 : the electrophoresis of the digested plasmids showed that 3 out of 4 clones had the good fragment.</li>
 +
</ul>
 +
</description>
 +
                      </jour>
 +
 +
<jour nb="10">
 +
                        <date>Friday, August 10th 2012</date>
 +
                        <titre>For all purposes</titre>
 +
<description>
 +
<ul>
 +
<li>Deletion of the site SpeI from pHT315 and pHT304 plasmids and filling-in using the Pfu polymerase. This time we used gel electrophoresis to verify the plasmids after each purification.</li>
 +
<li>Extraction of the plasmid containing the RFP gene in the pSB1C3 iGEM backbone (midiprep).</li>
 +
</ul>
 +
</description>
 +
                      <titre>Kill</titre>
 +
<description>
 +
<ul>
 +
<li>New Lysostaphin tests are planned (on plates) : in this purpose, a culture of 60 mL of Bs 168 pWG100 is inoculated and then incubated over night at 28°C.</li>
 +
<li>None of the  clones Lyso+Dsp grew on Ampicillin so LB cultures were inoculated.</li>
 +
<li>Out of 29 clones, 18 clones Prom+Dsp are Ampicillin sensitive, LB cultures are launched with these clones.</li>
 +
<li>Plasmidic extractions of these clones : clones not okay.</li>
 +
<li>PCR to obtain pSB1C3 : the electrophoresis showed that there was no DNA, so another essay was done, but it was unsuccessful.</li>
 +
<li>The strain NM522 with Constitutive Promotor + pSB1C3 was put in storage under the reference BK27.</li>
 +
</ul>
 +
</description>
 +
                      <titre>Surfactant</titre>
 +
<description>
 +
<ul>
 +
<li>Ligation of the sfp and abrB parts in an iGEM backbone.</li>
 +
<li>The strain NM522 with abrB-pSB1K3 was put in storage under the reference BK25.</li>
 +
<li>The strain NM522 with sfp-pSB1K3 was put in storage under the reference BK26.</li>
 +
</ul>
 +
</description>
 +
                      </jour>
 +
 +
<jour nb="11">
 +
                        <date>Saturday, August 11th</date>
 +
                        <titre>For all purposes</titre>
 +
<description>
 +
Gel electrophoresis showed that the elimination of the SpeI site was not successful.
</description>
</description>
                       </jour>
                       </jour>

Revision as of 16:31, 9 September 2012


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