Team:LMU-Munich/Bacillus Introduction

From 2012.igem.org

(Difference between revisions)
 
(84 intermediate revisions not shown)
Line 1: Line 1:
<!-- Include the next line at the beginning of every page -->
<!-- Include the next line at the beginning of every page -->
{{:Team:LMU-Munich/Templates/Page Header|File:Bacillus in urban culture.jpg}}
{{:Team:LMU-Munich/Templates/Page Header|File:Bacillus in urban culture.jpg}}
-
[[File:Bacillus_introduction_banner.jpg|620px|link=]]
+
[[File:Bacillus introduction banner.resized WORDS.JPG|620px|link=]]
-
[[File:Bacilluss Intro.png|100px|right]]
+
-
<p></p>
+
 +
[[File:Bacilluss_Intro.png|100px|right|link=]]
-
==''Bacillus subtilis'' - a new chassis for iGEM==
 
-
We chose to work with ''Bacillus subtilis'' to set new horizons and offer tools for this model organism to the Escherichia coli-dominated world of iGEM. In addition, this organism produces spores which we use for our '''Sporo'''beads. To introduce ''B. subtilis'' to the iGEM world we want to present you some important aspect of this organism in contrast to the commonly used ''Escherichia coli''.
+
==''Bacillus subtilis'' - a new chassis for iGEM==
-
 
+
<br>
-
 
+
<div class="box">
-
{| class="colored" width="100%"
+
====Introduction====
-
|-
+
{| width="100%" style="text-align:center;"|
-
!Organism
+
|<p align="justify">Introduction to ''B. subtilis'' and background information.</p>
-
!''B. subtilis''
+
|[[File:Tabelle.png|right|150px|link=Team:LMU-Munich/Data/introintro]]
-
!''E. coli''
+
-
|-
+
-
!<font color="#EBFCE4" size="2">type</font>
+
-
|gram positive rod
+
-
|gram negative rod
+
-
|-
+
-
!Motility
+
-
|pos
+
-
|pos
+
-
|-
+
-
!Transformation
+
-
|natural competence
+
-
|artificial competence
+
-
|-
+
-
!Vectors
+
-
|integrative and replicative
+
-
|replicative
+
-
|-
+
-
!Sporulation
+
-
|pos
+
-
|neg
+
-
|-
+
-
!Differentiation
+
-
|pos
+
-
|neg
+
-
|-
+
-
!Safety
+
-
|GRAS
+
-
|GRAS
+
|-
|-
 +
! colspan="2" |[[File:LMU Arrow purple.png|40px|link=Team:LMU-Munich/Data/introintro]]
|}
|}
 +
</div>
-
In contrast to ''E. coli'', the model organism ''B. subtilis'' is a gram-postivite rod. It is a facultative aerobe soil bacterium which can move with his peritrichous '''(?)'''. Under very good living conditions it has a doubling time of 45 minutes. ''B. subtilis'' is, in contrast to ''E. coli'', naturally competent, what means that e.g. under nutrient limitation 10% cells of a populaton get competent and take up DNA. Also unique for ''B. subtilis'' is that the vegetative cells can differentiate under nutrient limitations in spores which we use in our project '''Bead'''zillus. Concerning the work with ''B. subtilis'' it is important to know that there are integrative vectors which can integrate into the genome of the organism in contrast to E. coli where there are only replicative vectors.
 
-
Visit our [[Team:LMU-Munich/Lab_Notebook/Protocols|Protocols page]] for details how to work with ''B. subtilis''
+
There are two major differences between ''B. subtilis'' and ''E. coli'' that are of interest to us:
-
{| style="color:black;" cellpadding="3" width="70%" cellspacing="0" border="0" align="center" style="text-align:left;"
+
<div class="box">
-
| style="width: 70%;background-color: #EBFCE4;" |
+
====Transformation of ''B. subtilis''====
-
{|
+
{| width="100%" style="text-align:center;"|
-
|[[File:LMU Bacillus life.png|300px||center|400px]]
+
|<p align="justify">Cloning strategy for the work of '' B. subtilis''.</p>
 +
|[[File:Integration.png|right|150px|link=Team:LMU-Munich/Data/integration]]
|-
|-
-
| style="width: 70%;background-color: #EBFCE4;" |
+
! colspan="2" |[[File:LMU Arrow purple.png|40px|link=Team:LMU-Munich/Data/integration]]
-
{| style="color:black;" cellpadding="0" width="95%" cellspacing="0" border="0" align="center" style="text-align:center;"
+
-
|style="width: 70%;background-color: #EBFCE4;" |
+
-
<font color="#000000"; size="2"></font>
+
-
|}
+
-
|}
+
|}
|}
 +
</div>
-
{| style="color:black;" cellpadding="3" width="70%" cellspacing="0" border="0" align="center" style="text-align:left;"
+
<div class="box">
-
| style="width: 70%;background-color: #EBFCE4;" |
+
====Differentiation====
-
{|
+
{| width="100%" style="text-align:center;"|
-
|[[File:Figures Bacillus Intro fig1.png|300px|center]]
+
|<p align="justify">The life cycle of ''B. subtilis'' and the different cell stages.</p>
 +
|[[File:Figures Bacillus Intro fig1.png|right|150px|link=Team:LMU-Munich/Data/differentiation]]
|-
|-
-
| style="width: 70%;background-color: #EBFCE4;" |
+
! colspan="2" |[[File:LMU Arrow purple.png|40px|link=Team:LMU-Munich/Data/differentiation]]
-
{| style="color:black;" cellpadding="0" width="95%" cellspacing="0" border="0" align="center" style="text-align:center;"
+
-
|style="width: 70%;background-color: #EBFCE4;" |
+
-
<font color="#000000"; size="2"><p align="justify">'''Figure 1:''' The vegetative cycle is very similiar to the one of ''E. coli.'' But if there is a stress condition like starvation, the cells enter sporulation, where they first undergo a polar cell division, followed by the formation of the endospore. If the enviromental conditions are suitable again, the spore will then germinate and reenter the vegetative cycle.</p></font>
+
|}
|}
-
|}
+
</div>
-
|}
+
-
 
+
-
 
+
-
 
+
-
{| style="color:black;" cellpadding="3" width="70%" cellspacing="0" border="0" align="center" style="text-align:left;"
+
-
| style="width: 70%;background-color: #EBFCE4;" |
+
-
{|
+
-
|[[File:Figures Bacillus Intro fig2.png|300px|center]]
+
-
|-
+
-
| style="width: 70%;background-color: #EBFCE4;" |
+
-
{| style="color:black;" cellpadding="0" width="95%" cellspacing="0" border="0" align="center" style="text-align:center;"
+
-
|style="width: 70%;background-color: #EBFCE4;" |
+
-
<font color="#000000"; size="2"><p align="justify">'''Figure 2:''' Exogenic DNA is shown in red while the bacterial genome is black a) The propagation of exogenic DNA if brought in as replicative plasmid. The number of plasmids per cell can vary. b) The propagation of exogenic DNA if it is able to integrate into the genome via homologous recombination</p></font>
+
-
|}
+
-
|}
+
-
|}
+
-
 
+
-
 
+
-
 
+
-
<p align="justify">
+
-
Mostly ''E. coli'' is used as the general chassis in the iGEM competition. We are using ''B. subtilis'' as chassis for a few reasons. There are two major differences between ''B. subtilis'' and ''E. coli'' that are of interest to us:
+
<br>
<br>
<br>
<br>
-
'''1.''' ''B. subtilis'' is able to differentiate into cells with different morphology and function, the most severe form being the endospore which is formed under stress conditions. But there are also phenomena like cannibalism which makes ''B. subtilis'' a lot more diverse to work with. We will exploit the production of endospores in our project '''Bead'''zillus. The life cycle of ''B. subtilis'' is depicted in '''Figure 1'''.
 
<br>
<br>
-
</p>
 
-
 
<br>
<br>
-
<p align="justify">
 
-
'''2.''' ''B. subtilis'' can replicate exogenic DNA via an origin of replication on a plasmid as ''E. coli'' does, but there is a much more elegant way of bringing in exogenic DNA stretches. When flanked by homologous regions to the bacterial genome, it will integrate at high efficiency via homologous recombination at this locus and furthermore be replicated with the genome. This has the advantage that if comparing different things, not only the enviroment is always the same, but also the copy number is from cell to cell and from strain to strain the same, which is not always the case for replicative plasmids. This integrative way of bringing in exogenic DNA will be exploited by us when producing the BioBrick compatible ''Bacillus'' vectors. The comparision between these two ways of bringing in exogenic DNA  is depicted in Figure 2.
 
-
<br>
 
-
For these reasons in some cases ''B. subtilis'' can be the chassis of choice. Sadly very few teams have worked with this model organism and there is at this time no established BioBrick system to use ''B. subtilis'' as a chassis.
 
-
</p>
 
-
<br>
 
-
 
-
<br>
 
-
 
-
<br>
 
-
 
-
 
-
 
<div class="box">
<div class="box">
====Project Navigation====
====Project Navigation====
Line 132: Line 60:
|}
|}
</div>
</div>
 +
 +

Latest revision as of 16:53, 26 October 2012

iGEM Ludwig-Maximilians-Universität München Beadzillus

Bacillus in urban culture.jpg

The LMU-Munich team is exuberantly happy about the great success at the World Championship Jamboree in Boston. Our project Beadzillus finished 4th and won the prize for the "Best Wiki" (with Slovenia) and "Best New Application Project".

IGEM HQ LMU prize.jpg

[ more news ]

Sporenfreunde

Retrieved from "http://2012.igem.org/Team:LMU-Munich/Bacillus_Introduction"