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Team:LMU-Munich/Bacillus Introduction
From 2012.igem.org
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'''1) Transformation of ''B. subtilis''''' | '''1) Transformation of ''B. subtilis''''' | ||
| - | <br>As ''B. subtilis'' and ''E. coli'' are model organisms, they have established genetics. The advantage of ''B. subtilis'' is that it is naturally competent. So it is very easy to conduct genetic manipulations. It can replicate plasmids as ''E. coli'' does, but there is a much more elegant way of bringing in exogenous DNA fragments. When flanked by regions homologous to the B. subtilis genome, it will be integrated at high efficiency via homologous recombination at this locus and subsequently be replicated with the | + | <br>As ''B. subtilis'' and ''E. coli'' are model organisms, they have established genetics. The advantage of ''B. subtilis'' is that it is naturally competent. So it is very easy to conduct genetic manipulations. It can replicate plasmids as ''E. coli'' does, but there is a much more elegant way of bringing in exogenous DNA fragments. When flanked by regions homologous to the ''B. subtilis'' genome, it will be integrated at high efficiency via homologous recombination at this locus and subsequently be replicated with the chromosome. This leads to stable, single-copy genomic alterations. Thereby avoiding copy-number artifacts occuring with replicative plasmids. This different way of genetic manipulations requires the use of integrative vectors as provided by our [BacillusBioBrichBox]. bringing in exogenous DNA was exploited by us when producing the BioBrick compatible ''Bacillus'' vectors. The comparision between these two ways of bringing in exogenous DNA is depicted in Fig. 2. For these reasons, in some cases ''B. subtilis'' can be the chassis of choice. Unfortunately, very few iGEM teams have worked with this model organism, and there is at this time no established BioBrick system to use ''B. subtilis'' as a chassis.</p> |
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Revision as of 23:40, 26 September 2012
The LMU-Munich team is exuberantly happy about the great success at the World Championship Jamboree in Boston. Our project Beadzillus finished 4th and won the prize for the "Best Wiki" (with Slovenia) and "Best New Application Project".
[ more news ]
Bacillus subtilis - a new chassis for iGEM
We chose to work with Bacillus subtilis to set new horizons in the Escherichia coli-dominated world of iGEM by offering a set of tool for this gram-positive model organism to the . To introduce B. subtilis, we first want to highlight some important aspects of this organism, which are listed in the table below.
| Organism | B. subtilis | E. coli |
|---|---|---|
| Type | gram-positive rod | gram-negative rod |
| Motility | + | + |
| Transformation | natural competence | artificial competence |
| Vectors | integrative & replicative | replicative |
| Sporulation | + | - |
| Differentiation | + | - |
| Safety | GRAS | GRAS |
In general, bacteria can be divided into two major groups that differ primarily differ in their cell envelope: gram-positive and gram-negative. E. coli is the model organism for the gram-negative bacteria. A model organism for the gram-positive bacteria is B. subtilis, our favourite pet. The natural habitat of B. subtilis is the soil, so it is forced to adapt to numerous environmental changes. Accordingly, B. subtilis is characterized by quick and cunning reflexes and a complex life style. There are many differentiations and survival strategies that B. subtilis can engage (Fig. 1): Due to its natural competence, it can take up exogenous DNA and integrate it into its genome. To be flexibel to the environment and move towards nutrients or avoid toxic compounds, it is motile with the aid of its peritrichous flagella. If starved some cells even become cannibles that fees on their siblings. If the conditions get too bad for survival, B. subtilis can form endospores. These are very dormant and highly stable stages that are resistent against e.g. desiccation, UV light, heat and pressure. Once these spores encounter better conditions they are able to germinate again. See this [section] for Details.
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There are two major differences between B. subtilis and E. coli that are of interest to us:
1) Transformation of B. subtilis
As B. subtilis and E. coli are model organisms, they have established genetics. The advantage of B. subtilis is that it is naturally competent. So it is very easy to conduct genetic manipulations. It can replicate plasmids as E. coli does, but there is a much more elegant way of bringing in exogenous DNA fragments. When flanked by regions homologous to the B. subtilis genome, it will be integrated at high efficiency via homologous recombination at this locus and subsequently be replicated with the chromosome. This leads to stable, single-copy genomic alterations. Thereby avoiding copy-number artifacts occuring with replicative plasmids. This different way of genetic manipulations requires the use of integrative vectors as provided by our [BacillusBioBrichBox]. bringing in exogenous DNA was exploited by us when producing the BioBrick compatible Bacillus vectors. The comparision between these two ways of bringing in exogenous DNA is depicted in Fig. 2. For these reasons, in some cases B. subtilis can be the chassis of choice. Unfortunately, very few iGEM teams have worked with this model organism, and there is at this time no established BioBrick system to use B. subtilis as a chassis.
B. subtilis is able to differentiate into cells with different morphology and function (Fig. 3), the most severe form being the endospore which is produced under stress conditions. These spores are resistant towards environmental influences. But if they sense favour conditions they can germinate again. In our project, we will exploit the production of endospores. Because they are extremely stable, they are good vehicles for our fusion proteins with certain functions.
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