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Team:LMU-Munich/Bacillus Introduction
From 2012.igem.org
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==''Bacillus subtilis'' - a new chassis for iGEM== | ==''Bacillus subtilis'' - a new chassis for iGEM== | ||
| - | We chose to work with ''Bacillus subtilis'' to set new horizons and offer tools for this model organism to the Escherichia coli-dominated world of iGEM. In | + | We chose to work with ''Bacillus subtilis'' to set new horizons and offer tools for this model organism to the Escherichia coli-dominated world of iGEM. In addition, this organism produces spores which we use for our '''Sporo'''beads. To introduce ''B. subtilis'' to the iGEM world we want to present you some important aspect of this organism in contrast to the commonly used ''Escherichia coli''. |
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| - | In contrast to ''E. coli'' the model organism ''B. subtilis'' is a gram-postivite rod. It is a facultative aerobe soil bacterium which can move with his peritrichous '''(?)'''. Under very good living conditions it has a doubling time of 45 minutes. ''B. subtilis'' is, in contrast to ''E. coli'', naturally competent. Competence means that an organim takes up DNA. If there is for example nutrient limitation 10% cells of a population get competent. There are a lot of differentiation forms which can be formed out of a vegetative cell. One of these forms is the spore. Spores develop when there is nutrient limitation but in nature they can germinate again when living conditions get better. Concerning the work with ''B. subtilis'' it is important to know that there are integrative vectors which | + | In contrast to ''E. coli'', the model organism ''B. subtilis'' is a gram-postivite rod. It is a facultative aerobe soil bacterium which can move with his peritrichous '''(?)'''. Under very good living conditions it has a doubling time of 45 minutes. ''B. subtilis'' is, in contrast to ''E. coli'', naturally competent. Competence means that an organim takes up DNA. If there is for example nutrient limitation, 10% cells of a population get competent. There are a lot of differentiation forms which can be formed out of a vegetative cell. One of these forms is the spore. Spores develop when there is nutrient limitation but in nature they can germinate again when living conditions get better. Concerning the work with ''B. subtilis'' it is important to know that there are integrative vectors which can integrate into the genome of the organism. |
Visit our [[Team:LMU-Munich/Lab_Notebook/Protocols|Protocols page]] for details how to work with ''B. subtilis'' | Visit our [[Team:LMU-Munich/Lab_Notebook/Protocols|Protocols page]] for details how to work with ''B. subtilis'' | ||
Revision as of 14:11, 26 September 2012
The LMU-Munich team is exuberantly happy about the great success at the World Championship Jamboree in Boston. Our project Beadzillus finished 4th and won the prize for the "Best Wiki" (with Slovenia) and "Best New Application Project".
[ more news ]
Bacillus subtilis - a new chassis for iGEM
We chose to work with Bacillus subtilis to set new horizons and offer tools for this model organism to the Escherichia coli-dominated world of iGEM. In addition, this organism produces spores which we use for our Sporobeads. To introduce B. subtilis to the iGEM world we want to present you some important aspect of this organism in contrast to the commonly used Escherichia coli.
| Organism | B. subtilis | E. coli |
|---|---|---|
| type | gram positive rod | gram negative rod |
| Motility | pos | pos |
| Safety | GRAS | GRAS |
| Transformation | natural competence | artificial competence |
| Vectors | integrative and replicative | replicative |
| Sporulation | pos | neg |
| Differentiation | pos | neg |
In contrast to E. coli, the model organism B. subtilis is a gram-postivite rod. It is a facultative aerobe soil bacterium which can move with his peritrichous (?). Under very good living conditions it has a doubling time of 45 minutes. B. subtilis is, in contrast to E. coli, naturally competent. Competence means that an organim takes up DNA. If there is for example nutrient limitation, 10% cells of a population get competent. There are a lot of differentiation forms which can be formed out of a vegetative cell. One of these forms is the spore. Spores develop when there is nutrient limitation but in nature they can germinate again when living conditions get better. Concerning the work with B. subtilis it is important to know that there are integrative vectors which can integrate into the genome of the organism.
Visit our Protocols page for details how to work with B. subtilis
Figure 1: The vegetative cycle is very similiar to the one of E. coli. But if there is a stress condition like starvation, the cells enter sporulation, where they first undergo a polar cell division, followed by the formation of the endospore. If the enviromental conditions are suitable again, the spore will then germinate and reenter the vegetative cycle.
Figure 2: Exogenic DNA is shown in red while the bacterial genome is black a) The propagation of exogenic DNA if brought in as replicative plasmid. The number of plasmids per cell can vary. b) The propagation of exogenic DNA if it is able to integrate into the genome via homologous recombination
Mostly E. coli is used as the general chassis in the iGEM competition. We are using B. subtilis as chassis for a few reasons. There are two major differences between B. subtilis and E. coli that are of interest to us:
1. B. subtilis is able to differentiate into cells with different morphology and function, the most severe form being the endospore which is formed under stress conditions. But there are also phenomena like cannibalism which makes B. subtilis a lot more diverse to work with. We will exploit the production of endospores in our project Beadzillus. The life cycle of B. subtilis is depicted in Figure 1.
2. B. subtilis can replicate exogenic DNA via an origin of replication on a plasmid as E. coli does, but there is a much more elegant way of bringing in exogenic DNA stretches. When flanked by homologous regions to the bacterial genome, it will integrate at high efficiency via homologous recombination at this locus and furthermore be replicated with the genome. This has the advantage that if comparing different things, not only the enviroment is always the same, but also the copy number is from cell to cell and from strain to strain the same, which is not always the case for replicative plasmids. This integrative way of bringing in exogenic DNA will be exploited by us when producing the BioBrick compatible Bacillus vectors. The comparision between these two ways of bringing in exogenic DNA is depicted in Figure 2.
For these reasons in some cases B. subtilis can be the chassis of choice. Sadly very few teams have worked with this model organism and there is at this time no established BioBrick system to use B. subtilis as a chassis.
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| Bacillus Intro | Bacillus BioBrickBox | Sporobeads | Germination STOP |
