Team:LMU-Munich/Bacillus Introduction

From 2012.igem.org

Revision as of 08:29, 25 September 2012

• Home
• Team
• Project
  • Why Beadzillus?
  • Bacillus Introduction
  • Bacillus BioBrickBox
  • GerminationSTOP
  • Sporobeads
  • Data
  • Applications
• Extras
  • Attributions
  • Collaborations
  • Registry
  • Bacillus Strains
  • Special: Inverter
  • Achievements
• Safety
  • Project Safety
  • Release for application
• Lab Notebook
  • Weekly Journal
  • Protocols
• Human Practice
  • SynBio Day
  • Students Practical Course
  • CAS SynBio Conference
  • Berlin Conference
• Sponsors

Bacillus subtilis - a new chassis for iGEM

Here we summarize some aspects of Bacillus subtilis that we think are important to mention

Visit our Protocols page for details how to work with B. subtilis

Figure 1: The vegetative cycle is very similiar to the one of E. coli. But if there is a stress condition like starvation, the cells enter sporulation, where they first undergo a polar cell division, followed by the formation of the endospore. If the enviromental conditions are suitable again, the spore will then germinate and reenter the vegetative cycle.

Figure 2: Exogenic DNA is shown in red while the bacterial genome is black a) The propagation of exogenic DNA if brought in as replicative plasmid. The number of plasmids per cell can vary. b) The propagation of exogenic DNA if it is able to integrate into the genome via homologous recombination

Mostly E. coli is used as the general chassis in the iGEM competition. We are using B. subtilis as chassis for a few reasons. There are two major differences between B. subtilis and E. coli that are of interest to us:

1. B. subtilis is able to differentiate into cells with different morphology and function, the most severe form being the endospore which is formed under stress conditions. But there are also phenomena like cannibalism which makes B. subtilis a lot more diverse to work with. We will exploit the production of endospores in our project Beadzillus. The life cycle of B. subtilis is depicted in Figure 1.

2. B. subtilis can replicate exogenic DNA via an origin of replication on a plasmid as E. coli does, but there is a much more elegant way of bringing in exogenic DNA stretches. When flanked by homologous regions to the bacterial genome, it will integrate at high efficiency via homologous recombination at this locus and furthermore be replicated with the genome. This has the advantage that if comparing different things, not only the enviroment is always the same, but also the copy number is from cell to cell and from strain to strain the same, which is not always the case for replicative plasmids. This integrative way of bringing in exogenic DNA will be exploited by us when producing the BioBrick compatible Bacillus vectors. The comparision between these two ways of bringing in exogenic DNA is depicted in Figure 2.
For these reasons in some cases B. subtilis can be the chassis of choice. Sadly very few teams have worked with this model organism and there is at this time no established BioBrick system to use B. subtilis as a chassis.

Project Navigation

Bacillus Intro	Bacillus BioBrickBox	Sporobeads	Germination STOP