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Team:Johns Hopkins-Software/theSoftware overview
From 2012.igem.org
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AutoPlasmid | AutoPlasmid | ||
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| - | <br>AutoPlasmid is a simple-to-use annotation tool. Hand it a sequence of DNA, however big or small you'd like, and sit back and watch. AutoPlasmid will search through a database containing 40,000 features and look for matches. Not only does it find perfect matches, but if you specify, you can search for imperfect matches with any threshold you'd like (ex. 90% match). | + | <br>AutoPlasmid is a simple-to-use annotation tool. Hand it a sequence of DNA, however big or small you'd like, and sit back and watch. AutoPlasmid will search through a database containing 40,000 features and look for matches. Not only does it find perfect matches, but if you specify, you can search for imperfect matches with any threshold you'd like (ex. 90% match). |
| + | <br><br><img src="https://static.igem.org/mediawiki/2012/8/8d/AnnotationOptionsJHU.png"/><br><br> | ||
| - | + | After searching for annotations, open your plasmid to look inside. | |
<br><br><img src="https://static.igem.org/mediawiki/2012/6/6e/Puc18JHU.png"/><br><br> | <br><br><img src="https://static.igem.org/mediawiki/2012/6/6e/Puc18JHU.png"/><br><br> | ||
Interact with it by selecting features, manipulating the DNA, and adding any custom annotations you'd like. You can even view amino acid translations or oligo matches. | Interact with it by selecting features, manipulating the DNA, and adding any custom annotations you'd like. You can even view amino acid translations or oligo matches. | ||
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<img src="https://static.igem.org/mediawiki/2012/e/e5/CustomAnnotationWindow.png"/><br><br> | <img src="https://static.igem.org/mediawiki/2012/e/e5/CustomAnnotationWindow.png"/><br><br> | ||
<img src="https://static.igem.org/mediawiki/2012/a/a1/TranslationScreenshot.png"/><br><br> | <img src="https://static.igem.org/mediawiki/2012/a/a1/TranslationScreenshot.png"/><br><br> | ||
Revision as of 02:44, 1 October 2012
