Team:HokkaidoU Japan/Notebook/plastic Week 8

From 2012.igem.org

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(Colony PCR)
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==Colony PCR==
==Colony PCR==
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We confirmed whether the ligation of yesterday went well by colony PCR.
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We did colony PCR of phaA and phaB.
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From the result, we can say that...
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[[image:HokkaidoU 120823 PhaAcolop1 14.jpg|thumb|Colony PCR result]]
[[image:HokkaidoU 120823 PhaAcolop1 14.jpg|thumb|Colony PCR result]]

Revision as of 00:18, 26 September 2012

Contents

August 20th

Digestion

We digested three samples.
Digestions of PhaC and pSB1C3 with XbaI and SpeI.

DNA solution PhaC 12 ul
XbaI 1 ul
SpeI 1 ul
10xM buffer 2 ul
DW 4 ul
Total 20 ul

Digestion of PhaA with XbaI site and SpeI site.

DNA solution PhaA 7 ul
XbaI 1 ul
SpeI 1 ul
10xM buffer 2 ul
DW 9 ul
Total 20 ul


And digestion of PhaB with XbaI site and SpeI site.

DNA solution PhaB 7 ul
XbaI 1 ul
SpeI 1 ul
10xM buffer 2 ul
DW 9 ul
Total 20 ul



August 21st

Electrophoresis

digestion result

We confirmed whether PhaC was digested correctly, and phaA and phaB were done PCR correctly by electrophoresis.


Gel extraction

We confirmed succession of digestion by electrophoresis, then DNA were extracted from TBE gel. And we used FastGene Gel&PCR extraction kit(NipponGenetics)and got 50 ul of DNA solution.


August 22nd

Ethanol precipitation

Ethanol precipitation result

The DNA extracted yesterday were condensed by Ethanol precipitation.

Ligation

We ligated phaA with pSB1C3 and phaB with pSB1C3.

Transformation

The ligated DNA were transformed into E.coli (strain: _____). E.Coli solution was spread on LB_.


August 23rd

Colony PCR

We confirmed whether the ligation of yesterday went well by colony PCR.

Colony PCR result
Colony PCR result


August 24th

Colony PCR

We did colony PCR of PhaA and PhaB again.

Colony PCR result
Colony PCR result

From the result, we thought that we failed to ligate PhaA and pSB1C3, and PhaB and pSB1C3. So we ligated PhaA and pSB1C3, and PhaB and pSB1C3 again.


August 25th

Colony PCR

The length of PhaA on pSB1C3 and PhaB on pSB1C3 were confirmed by colony PCR.
The result showed PhaA and pSB1C3 were ligated correctly.

Colony PCR result
Colony PCR result


Liquid culture

Cultivation of bacteria holds RBS (B0034) was started.


Digestion

Digestion to divide PhaC(BBa_K342001) with XbaI and SpeI. The result shows that the digestion succeeded.

digestion result



August 26th

Plasmid extraction

The plasmid of RBS (BBa_B0034) were extracted.
And then we got 50ul DNA solution.

plasmid extraction result


Digestion

RBS (BBa_B0034) was digested with SpeI and PstI restriction sites.
And also PhaC (BBa_K342001) was digested with XbaI and PstI.

liquid culture