Team:Groningen/Notebook/Modeling 3August2012

From 2012.igem.org

(Difference between revisions)
m
m
Line 1: Line 1:
{{HeaderGroningen2012}}
{{HeaderGroningen2012}}
 +
<html>
 +
<head>
 +
<style type="text/css">
 +
p.margin{
 +
font-size:14pt;
 +
line-height:14pt;
 +
color:white;
 +
margin-top:0px;
 +
margin-bottom:20px;
 +
margin-left:100px;
 +
margin-right:100px;
 +
}
 +
</style>
 +
</head>
-
# Updated the main modeling page.
+
<body>
-
# Found a review article on integrating regulatory networks:
+
<p class="margin">
-
#*L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.
+
Updated the main modeling page.
-
# From the review article, it looks like the PROM technique can be extended using idFBA.
+
<br>
-
#* J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.
+
<br>
 +
                        1. Found a review article on integrating regulatory networks:
 +
<br>
 +
<br>
 +
* L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.
 +
<br>
 +
<br>
 +
2. From the review article, it looks like the PROM technique can be extended using idFBA.
 +
<br>
 +
<br>
 +
* J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.
 +
<br>
 +
<br>
 +
<A HREF="http://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A>
 +
</p>
 +
</body>
 +
</html>
 +
 
 +
{{Template:SponsorsGroningen2012}}

Revision as of 15:26, 15 September 2012




Updated the main modeling page.

1. Found a review article on integrating regulatory networks:

* L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.

2. From the review article, it looks like the PROM technique can be extended using idFBA.

* J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.

Back to notebook