Team:Groningen/Notebook/Modeling 31July2012

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Great headway towards implementing a transcription-regulation network into the FBA model.  
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# I've identified sources for the network ([http://dbtbs.hgc.jp/ DBTBS],[http://regprecise.lbl.gov/RegPrecise/collection_taxspec.jsp?collection_id=5 RegPrecise]).
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# I've identified sources for expression data ([http://www.genome.jp/kegg/expression/ KEGG],[http://bacillus.genome.ad.jp/ BSORF]).
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Great headway towards implementing a transcription-regulation network into the FBA model.  
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# I'm halfway through analyzing the script from the debut PROM article. ([http://www.pnas.org/content/107/41/17845 Link])
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1. I've identified sources for the network
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<a href="http://dbtbs.hgc.jp/"><font color=#ff6700>DBTBS</font></a>
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<a href="http://regprecise.lbl.gov/RegPrecise/collection_taxspec.jsp?collection_id=5"><font color=#ff6700>RegPrecise</font></a>
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2. I've identified sources for expression data
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<a href="http://www.genome.jp/kegg/expression/"><font color=#ff6700>KEGG</font></a>
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<a href="http://bacillus.genome.ad.jp/"><font color=#ff6700>BSORF</font></a>
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3. I'm halfway through analyzing the script from the debut PROM article.  
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<a href="http://www.pnas.org/content/107/41/17845"><font color=#ff6700>Link</font></a>
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S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010.
S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010.
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<A HREF="http://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A>
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[[File:Groningen2012_JP_20120731_Workflow_PROM.png|center|680px]]
[[File:Groningen2012_JP_20120731_Workflow_PROM.png|center|680px]]
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Revision as of 16:28, 15 September 2012




Great headway towards implementing a transcription-regulation network into the FBA model.
1. I've identified sources for the network DBTBS RegPrecise
2. I've identified sources for expression data KEGG BSORF
3. I'm halfway through analyzing the script from the debut PROM article. Link

S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010.

Back to notebook


Groningen2012 JP 20120731 Workflow PROM.png