Team:Groningen/Notebook/Modeling 19June2012

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Added thermodynamic constraints to 763 out of 1,681 reactions in iBsu1103. Data was available for 751 out of 1,138 metabolites based on their KEGG ID. Data was sourced from http://equilibrator.weizmann.ac.il/.  
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Added thermodynamic constraints to 763 out of 1,681 reactions in iBsu1103. Data was available for 751 out of 1,138 metabolites based on their KEGG ID. Data was sourced from  
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<a href="http://equilibrator.weizmann.ac.il/"><font color=#ff6700>eQuilibrator</font></a>.  
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Cell growth is possible with only D-glucose, water, glutamine, and potassium.
Cell growth is possible with only D-glucose, water, glutamine, and potassium.
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Preparing to modify GAMS code to allow for dynamic FBA to observe the external concentrations over time.
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<A HREF="http://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A>
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Preparing to modify GAMS code to allow for dynamic FBA to observe the external concentrations over time.
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Revision as of 16:45, 15 September 2012




Added thermodynamic constraints to 763 out of 1,681 reactions in iBsu1103. Data was available for 751 out of 1,138 metabolites based on their KEGG ID. Data was sourced from eQuilibrator.

Cell growth is possible with only D-glucose, water, glutamine, and potassium.

Preparing to modify GAMS code to allow for dynamic FBA to observe the external concentrations over time.

Back to notebook